#include <itkDiffusionQballPrepareVisualizationImageFilter.h>

Collaboration diagram for itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >:

Public Types
enum	NormalizationMethods { PV_NONE, PV_MAX, PV_MIN_MAX, PV_GLOBAL_MAX, PV_MIN_MAX_INVERT }
typedef DiffusionQballPrepareVisualizationImageFilter	Self
typedef SmartPointer< Self >	Pointer
typedef SmartPointer< const Self >	ConstPointer
typedef ImageToImageFilter < Image< Vector< TOdfPixelType, NrOdfDirections >, 3 >, Image < Vector< TOdfPixelType, NrOdfDirections >, 3 > >	Superclass
typedef DiffusionQballGeneralizedFaImageFilter < TOdfPixelType, TOdfPixelType, NrOdfDirections >	GfaFilterType
typedef GfaFilterType::OutputImageType	GfaImageType
typedef GfaFilterType::GfaComputationMethod	GfaComputationMethod
typedef TOdfPixelType	OdfComponentType
typedef Superclass::InputImageType	InputImageType
typedef Superclass::OutputImageType	OutputImageType
typedef Superclass::OutputImageRegionType	OutputImageRegionType
Public Member Functions
virtual const char *	GetClassName () const
	itkStaticConstMacro (NOdfDirections, int, NrOdfDirections)
virtual void	SetThreshold (OdfComponentType _arg)
virtual OdfComponentType	GetThreshold ()
virtual void	SetNormalizationMethod (NormalizationMethods _arg)
virtual NormalizationMethods	GetNormalizationMethod ()
virtual void	SetScaleByGfaType (GfaComputationMethod _arg)
virtual GfaComputationMethod	GetScaleByGfaType ()
virtual void	SetDoScaleGfa (bool _arg)
virtual bool	GetDoScaleGfa ()
virtual void	SetGfaParam1 (double _arg)
virtual double	GetGfaParam1 ()
virtual void	SetGfaParam2 (double _arg)
virtual double	GetGfaParam2 ()
Static Public Member Functions
static Pointer	New ()
Protected Member Functions
	DiffusionQballPrepareVisualizationImageFilter ()
	~DiffusionQballPrepareVisualizationImageFilter ()
void	PrintSelf (std::ostream &os, Indent indent) const
void	BeforeThreadedGenerateData ()
void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, int)

Detailed Description

template<class TOdfPixelType, int NrOdfDirections>
class itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >

Definition at line 36 of file itkDiffusionQballPrepareVisualizationImageFilter.h.

Member Typedef Documentation

template<class TOdfPixelType , int NrOdfDirections>

typedef SmartPointer<const Self> itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::ConstPointer

Definition at line 54 of file itkDiffusionQballPrepareVisualizationImageFilter.h.

template<class TOdfPixelType , int NrOdfDirections>

typedef GfaFilterType::GfaComputationMethod itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::GfaComputationMethod

Definition at line 62 of file itkDiffusionQballPrepareVisualizationImageFilter.h.

template<class TOdfPixelType , int NrOdfDirections>

typedef DiffusionQballGeneralizedFaImageFilter<TOdfPixelType,TOdfPixelType,NrOdfDirections> itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::GfaFilterType

Definition at line 60 of file itkDiffusionQballPrepareVisualizationImageFilter.h.

template<class TOdfPixelType , int NrOdfDirections>

typedef GfaFilterType::OutputImageType itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::GfaImageType

Definition at line 61 of file itkDiffusionQballPrepareVisualizationImageFilter.h.

template<class TOdfPixelType , int NrOdfDirections>

typedef Superclass::InputImageType itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::InputImageType

Definition at line 73 of file itkDiffusionQballPrepareVisualizationImageFilter.h.

template<class TOdfPixelType , int NrOdfDirections>

typedef TOdfPixelType itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::OdfComponentType

Definition at line 69 of file itkDiffusionQballPrepareVisualizationImageFilter.h.

template<class TOdfPixelType , int NrOdfDirections>

typedef Superclass::OutputImageRegionType itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::OutputImageRegionType

Definition at line 78 of file itkDiffusionQballPrepareVisualizationImageFilter.h.

template<class TOdfPixelType , int NrOdfDirections>

typedef Superclass::OutputImageType itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::OutputImageType

Definition at line 75 of file itkDiffusionQballPrepareVisualizationImageFilter.h.

template<class TOdfPixelType , int NrOdfDirections>

typedef SmartPointer<Self> itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::Pointer

Definition at line 53 of file itkDiffusionQballPrepareVisualizationImageFilter.h.

template<class TOdfPixelType , int NrOdfDirections>

typedef DiffusionQballPrepareVisualizationImageFilter itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::Self

Definition at line 52 of file itkDiffusionQballPrepareVisualizationImageFilter.h.

template<class TOdfPixelType , int NrOdfDirections>

typedef ImageToImageFilter< Image< Vector< TOdfPixelType, NrOdfDirections >, 3 >, Image< Vector< TOdfPixelType, NrOdfDirections >, 3 > > itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::Superclass

Definition at line 57 of file itkDiffusionQballPrepareVisualizationImageFilter.h.

Member Enumeration Documentation

template<class TOdfPixelType , int NrOdfDirections>

enum itk::DiffusionQballPrepareVisualizationImageFilter::NormalizationMethods

Enumerator:

PV_NONE
PV_MAX
PV_MIN_MAX
PV_GLOBAL_MAX
PV_MIN_MAX_INVERT

Definition at line 43 of file itkDiffusionQballPrepareVisualizationImageFilter.h.

  {
    PV_NONE,
    PV_MAX,
    PV_MIN_MAX,
    PV_GLOBAL_MAX,
    PV_MIN_MAX_INVERT
  };

Constructor & Destructor Documentation

template<class TOdfPixelType , int NrOdfDirections>

itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::DiffusionQballPrepareVisualizationImageFilter ( ) [protected]

Definition at line 16 of file itkDiffusionQballPrepareVisualizationImageFilter.cpp.

              {

  //#define QBALL_RECON_PI       3.14159265358979323846

  template< class TOdfPixelType, int NrOdfDirections>
    DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections>
    ::DiffusionQballPrepareVisualizationImageFilter() :
  m_Threshold(0),
    m_ScaleByGfaType(GfaFilterType::GFA_STANDARD),
    m_DoScaleGfa(false),

template<class TOdfPixelType , int NrOdfDirections>

itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::~DiffusionQballPrepareVisualizationImageFilter ( ) [inline, protected]

Definition at line 102 of file itkDiffusionQballPrepareVisualizationImageFilter.h.

{};

Member Function Documentation

template<class TOdfPixelType , int NrOdfDirections>

void itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::BeforeThreadedGenerateData ( ) [protected]

Definition at line 32 of file itkDiffusionQballPrepareVisualizationImageFilter.cpp.

  {
    if( m_NormalizationMethod == PV_GLOBAL_MAX )
    {
      typename InputImageType::Pointer inputImagePointer = NULL;
      inputImagePointer = static_cast< InputImageType * >( 
        this->ProcessObject::GetInput(0) );

      typename GfaFilterType::Pointer filter = GfaFilterType::New();
      filter->SetInput(inputImagePointer);
      filter->SetNumberOfThreads(4);
      filter->SetComputationMethod(GfaFilterType::GFA_MAX_ODF_VALUE);
      filter->Update();

      typedef typename itk::MinimumMaximumImageCalculator< typename GfaFilterType::OutputImageType > 
        MaxFilterType;
      typename MaxFilterType::Pointer maxFilter = MaxFilterType::New();
      maxFilter->SetImage(filter->GetOutput());
      maxFilter->ComputeMaximum();

      m_GlobalInputMaximum = maxFilter->GetMaximum();
    }

    //if(m_DoScaleGfa)
    {
      typename InputImageType::Pointer inputImagePointer = NULL;
      inputImagePointer = static_cast< InputImageType * >( 
        this->ProcessObject::GetInput(0) );

      typename GfaFilterType::Pointer filter = GfaFilterType::New();
      filter->SetInput(inputImagePointer);
      filter->SetNumberOfThreads(4);

template<class TOdfPixelType , int NrOdfDirections>

virtual const char* itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::GetClassName ( ) const [virtual]

Runtime information support.

template<class TOdfPixelType , int NrOdfDirections>

virtual bool itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::GetDoScaleGfa ( ) [virtual]

template<class TOdfPixelType , int NrOdfDirections>

virtual double itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::GetGfaParam1 ( ) [virtual]

template<class TOdfPixelType , int NrOdfDirections>

virtual double itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::GetGfaParam2 ( ) [virtual]

template<class TOdfPixelType , int NrOdfDirections>

virtual NormalizationMethods itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::GetNormalizationMethod ( ) [virtual]

template<class TOdfPixelType , int NrOdfDirections>

virtual GfaComputationMethod itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::GetScaleByGfaType ( ) [virtual]

template<class TOdfPixelType , int NrOdfDirections>

virtual OdfComponentType itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::GetThreshold ( ) [virtual]

template<class TOdfPixelType , int NrOdfDirections>

itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::itkStaticConstMacro	(	NOdfDirections	,
		int	,
		NrOdfDirections
	)

template<class TOdfPixelType , int NrOdfDirections>

static Pointer itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::New ( ) [static]

Method for creation through the object factory.

template<class TOdfPixelType , int NrOdfDirections>

void itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const `[protected]`

Definition at line 152 of file itkDiffusionQballPrepareVisualizationImageFilter.cpp.

template<class TOdfPixelType , int NrOdfDirections>

virtual void itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::SetDoScaleGfa ( bool _arg ) [virtual]

template<class TOdfPixelType , int NrOdfDirections>

virtual void itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::SetGfaParam1 ( double _arg ) [virtual]

template<class TOdfPixelType , int NrOdfDirections>

virtual void itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::SetGfaParam2 ( double _arg ) [virtual]

template<class TOdfPixelType , int NrOdfDirections>

virtual void itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::SetNormalizationMethod ( NormalizationMethods _arg ) [virtual]

template<class TOdfPixelType , int NrOdfDirections>

virtual void itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::SetScaleByGfaType ( GfaComputationMethod _arg ) [virtual]

template<class TOdfPixelType , int NrOdfDirections>

virtual void itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::SetThreshold ( OdfComponentType _arg ) [virtual]

template<class TOdfPixelType , int NrOdfDirections>

void itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >::ThreadedGenerateData	(	const OutputImageRegionType &	outputRegionForThread,
		int
	)		`[protected]`

Definition at line 76 of file itkDiffusionQballPrepareVisualizationImageFilter.cpp.

  {
    typename OutputImageType::Pointer outputImage = 
      static_cast< OutputImageType * >(this->ProcessObject::GetOutput(0));
    ImageRegionIterator< OutputImageType > oit(outputImage, outputRegionForThread);
    oit.GoToBegin();

    typedef itk::OrientationDistributionFunction<TOdfPixelType,NrOdfDirections> OdfType;
    typedef ImageRegionConstIterator< InputImageType > InputIteratorType;
    typedef typename InputImageType::PixelType         OdfVectorType;
    typename InputImageType::Pointer inputImagePointer = NULL;
    inputImagePointer = static_cast< InputImageType * >( 
      this->ProcessObject::GetInput(0) );
    InputIteratorType git(inputImagePointer, outputRegionForThread );
    git.GoToBegin();

    typedef ImageRegionConstIterator< GfaImageType > GfaIteratorType;
    GfaIteratorType gfaIt(m_GfaImage, outputRegionForThread);
    
    while( !git.IsAtEnd() )
    {
      OdfVectorType b = git.Get();
      OdfType odf = b.GetDataPointer();
 
      switch( m_NormalizationMethod )
      {
      case PV_NONE:
        {
          break;
        }
      case PV_MAX:
        {
          odf = odf.MaxNormalize();
          break;
        }
      case PV_MIN_MAX:
        {
          odf = odf.MinMaxNormalize();
          break;
        }
      case PV_GLOBAL_MAX:
        {
          odf *= 1.0/m_GlobalInputMaximum;
          break;
        }
      case PV_MIN_MAX_INVERT:
        {
          odf = odf.MinMaxNormalize();
          for(int i=0; i<NrOdfDirections; i++)
          {
            odf[i] = 1.0 - odf[i];
          }
          break;
        }
      }
        
      if(m_DoScaleGfa)
      {
        odf *= gfaIt.Get();
        ++gfaIt;
      }

      odf *= 0.5;

The documentation for this class was generated from the following files:

itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections > Class Template Reference

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Detailed Description

template<class TOdfPixelType, int NrOdfDirections> class itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >

Member Typedef Documentation

Member Enumeration Documentation

Constructor & Destructor Documentation

Member Function Documentation

template<class TOdfPixelType, int NrOdfDirections>
class itk::DiffusionQballPrepareVisualizationImageFilter< TOdfPixelType, NrOdfDirections >