Difference between revisions of "Tutorials"

Revision as of 11:28, 8 October 2015

MITK provides a large selection of tools and functionalities. This collection of tutorials should introduce you to the most common of them.

Probably some small differences to the tutorials can show up, when you start using newer versions, but they should not influence the general workflow.

May I introduce you to MITK?

Get an overview of the MITK Workbench on your first start.: Based on: MITK Workbench 2015.5.0; Date: August 2015; Data: TCGA-LIHC-DD-A113

Load, save and close projects

Here is explained how to get your data into or out of MITK.: Based on: MITK Workbench 2015.5.0; Date: August 2015; Data: TCGA-LIHC-DD-A113

Navigation inside of MITK

Learn about the most common functions in MITK, which you will use pretty much every time, work.: Based on: MITK Workbench 2015.5.0; Date: August 2015; Data: TCGA-LIHC-DD-A113

Measurements and Pointsets Interaction

See here how to use these helpful Plugins!: Based on: MITK Workbench 2015.5.0; Date: August 2015; Data: TCGA-LIHC-DD-A113

Capture the screen and movies

With these functions you can record easily your work.: Based on: MITK Workbench 2015.5.0; Date: August 2015; Data: TCGA-LIHC-DD-A113

Data-Sets

To practice the workflows we offer you datasets, which are also used in the tutorials, so that you can reproduce every described step.

Data: TCGA-LIHC-DD-A113 from The Cancer Genome Atlas (TCGA) Data Portal

Tutorial Team

Caspar Goch
Clara Meinzer
Jasmin Metzger
Guido Schmidt

@@ Line 1: / Line 1: @@
 __NOTOC__
-==!!! WORK IN PROGRESS !!!==
 MITK provides a large selection of tools and functionalities. This collection of tutorials should introduce you to the most common of them.
 Probably some small differences to the tutorials can show up, when you start using newer versions, but they should not influence the general workflow.
-<!--
-* Tutorials
-** [[Tutorials#May_I_introduce_you_to_MITK?|Welcome]]
-** [[Tutorials#Load,_save_and_close_projects|Load, save and close]]
-** [[Tutorials#Navigation_inside_of_MITK|Navigation]]
-** [[Tutorials#Measuremtens_and_Pointsets_Interaction|Measuremten and Pointset]]
-** [[Tutorials#Capture_the_screen_and_movies|Screenshot and Moviemaker]]
-* [[Tutorials#Data-Sets|Data]]
--->
@@ Line 22: / Line 12: @@
 : Based on: MITK Workbench 2015.5.0
 : Date: August 2015
-: Data: ??
+: Data: [[Tutorials#Data-Sets|TCGA-LIHC-DD-A113]]
@@ Line 31: / Line 21: @@
 : Based on: MITK Workbench 2015.5.0
 : Date: August 2015
-: Data: ??
+: Data: [[Tutorials#Data-Sets|TCGA-LIHC-DD-A113]]
@@ Line 40: / Line 30: @@
 : Based on: MITK Workbench 2015.5.0
 : Date: August 2015
-: Data: ??
+: Data: [[Tutorials#Data-Sets|TCGA-LIHC-DD-A113]]
@@ Line 49: / Line 39: @@
 : Based on: MITK Workbench 2015.5.0
 : Date: August 2015
-: Data: ??
+: Data: [[Tutorials#Data-Sets|TCGA-LIHC-DD-A113]]
@@ Line 58: / Line 48: @@
 : Based on: MITK Workbench 2015.5.0
 : Date: August 2015
-: Data: ??
+: Data: [[Tutorials#Data-Sets|TCGA-LIHC-DD-A113]]
 == Data-Sets ==
-To practice the workflows we offer you datasets, which are also used in the tutorials, so that you can reproduce every described step. At the end of the descriptions of the Tutorials you see the numbers of the used datasets.
+To practice the workflows we offer you datasets, which are also used in the tutorials, so that you can reproduce every described step.
-* DataSet #1
+: Data: [[media:TCGA-LIHC-DD-A113.zip|TCGA-LIHC-DD-A113]] from [https://tcga-data.nci.nih.gov/tcga/ The Cancer Genome Atlas (TCGA) Data Portal]
-* DataSet #2