Revision as of 10:15, 31 October 2011

MITK-DiffusionApp [PRE-RELEASE]

Future links are written in italics and will be accessible after the application release.

The MITK-Diffusion application offers a selection of image analysis algorithms for the processing of diffusion-weighted MR images. It encompasses the research of the Neuroimaging Group in the Division Medical and Biological Informatics at the German Cancer Research Center (dkfz).

#!wiki caution
'''Features & Highlights'''

 * Tensor and q-ball reconstruction
 * Glyph visualization
 * Quantification and partial volume clustering of tensor and q-ball images
 * Global fiber tractography, visualization, and tract post-processing
 * Brain network statistics and visualization (connectomics)
 * Interactive exploration of Tract-based spatial statistics (TBSS) results 
 * Intra-voxel incoherent motion (IVIM) estimation

The MITK-Diffusion application is based on the MITK research platform and the most of it is open-source. Solely the tract-based spatial statistics viewer and the brain network statistics module were not released yet, mainly due to some major internal changes expected in the near future. The available code is embedded into the source code of MITK as a module and can be accessed through the public git repository.

User manual

You can access the MITK-Diffusion online documentation here

You can download the MITK-Diffusion information brochure here

Media

Publication: MITK-DI - A new diffusion imaging component for MITK. In Deserno TM, Handels H, Meinzer HP, Tolxdorff T (eds). Bildverarbeitung für die Medizin 2010. Heidelberg: Springer (2010) 246-250 <
> Authors: Fritzsche KH¹, Meinzer H-P¹<
> Institution: ¹German Cancer Research Institute

Downloads

Version 1.0 ( Release data: TBA )

Windows
- x86_installer
- x64_installer
Linux
- x86
- x86_64
Mac OS X
- universal dmg

Contact

If you have questions about the application or if you would like to give us feedback, don't hesitate to contact us.

@@ Line 7: / Line 7: @@
 '''Future links are written in ''italics'' and will be accessible after the application release.'''
-[[Media:DiffusionImaging$MITK_DIsmall.png|DI_App|Icon|align="right"]]
+[http://www.mitk.org/wiki/MitkGit direct link to source code]
-The MITK-Diffusion application offers selected views for the analysis of diffusion-weighted MR images of the human brain. These views encompass the results of the latest research done by the [http://www.dkfz.de/en/mbi/projects/neuroimaging.html Neuroimaging Group] of the Division Medical and Biological Informatics of the Germen Cancer Research Center (dkfz).
+[[#Downloads|direct link to download section]]
+[[Media:DiffusionImaging$MITK_DIsmall.png|DI_App|Icon|align="right"]]
-<pre><nowiki>#!wiki comment
+The MITK-Diffusion application offers a selection of image analysis algorithms for the processing of diffusion-weighted MR images. It encompasses the research of the [http://www.dkfz.de/en/mbi/projects/neuroimaging.html Neuroimaging Group] in the Division Medical and Biological Informatics at the German Cancer Research Center (dkfz).
-Capabilities (functionality)
- * showcase of recent research results / topics
- * mainly open source <link MITK OS> (except of TBSS, Conectomics)
-</nowiki></pre>
@@ Line 24: / Line 19: @@
 '''Features & Highlights'''
-  * Visualisation and quantification of diffusion-weighted images
+  * Tensor and q-ball reconstruction
-  * Tensor and Q-Ball reconstruction
+  * Glyph visualization
-  * Quantification and clustering of tensor and Q-Ball images
+  * Quantification and partial volume clustering of tensor and q-ball images
-  * Fiber tracking and visualisation
+  * Global fiber tractography, visualization, and tract post-processing
-  * Brain network statistics and visualisation
+  * Brain network statistics and visualization (connectomics)
-  * Tract-based spatial statistics
+  * Interactive exploration of Tract-based spatial statistics (TBSS) results
+ * Intra-voxel incoherent motion (IVIM) estimation
 </nowiki></pre>
-The MITK-Diffusion application is based on the [https://www.mitk.org/wiki/ResearchPlatform MITK research platform] and most of the applications parts are open-source. Solely the tract-based spatial statistics and the brain network statistics views are not open-source. The available code is embedded into the source code of MITK as a module and can be accessed through the [https://www.mitk.org/wiki/MitkGit download section].
+The MITK-Diffusion application is based on the [https://www.mitk.org/wiki/ResearchPlatform MITK research platform] and the most of it is open-source. Solely the tract-based spatial statistics viewer and the brain network statistics module were not released yet, mainly due to some major internal changes expected in the near future. The available code is embedded into the source code of MITK as a module and can be accessed through the [https://www.mitk.org/wiki/MitkGit public git repository].
 == User manual ==
-<pre><nowiki>#!wiki comment
- -> pdf from doxy?, link to nightly dox (diff module)
-</nowiki></pre>
 You can access the ''MITK-Diffusion online documentation here''

Difference between revisions of "DiffusionImaging"