http://mitk.org/w/api.php?action=feedcontributions&user=AndreasFetzer&feedformat=atommitk.org - User contributions [en]2024-03-28T08:11:11ZUser contributionsMediaWiki 1.35.1http://mitk.org/w/index.php?title=CGS&diff=2911CGS2016-02-09T11:50:57Z<p>AndreasFetzer: </p>
<hr />
<div>== Overview ==<br />
<br />
On this page you can find detailed information about how to build up the semantic data infrastructure that is published in:<br />
<br />
<pre style="background:Gainsboro;<br />
font-size: 80%;">Fetzer, A., J. Metzger, D. Katic, K. März, M. Wagner et al.,<br />
"Towards an open-source semantic data infrastructure for integrating clinical and scientific data in cognition-guided surgery.",<br />
in Proc. SPIE Medical Imaging 2016 "PACS and Imaging Informatics: Next Generation and Innovations", 9789-22, (2016) <br />
</pre><br />
<br />
The proposed infrastructure allows you to integrate heterogneous data sets and make them available via a unified interfaced. Also the data can be annotated and integrated semantically which facilitates complex semantic queries on the data.<br />
<br />
An overview about the components of the infrastructure is depicted in the figure below:<br />
<br />
[[File:cgs-infrastructure.png|center|700px| An overview of the architecture of the infrastructure]]<br />
<br />
Following we briefly describe the components and tools of the infrastructure and how to get/install them.<br />
<br />
== Semantic data infrastructure ==<br />
<br />
=== XNAT - A flexible data storage ===<br />
<br />
The Extensible Neuroimaging Archive Toolkit (XNAT) is a flexible data storage system. It is developed at the Washington University in St. Louis and focuses on storing medical image data but is capable to handle arbitrary data as well.<br />
<br />
* '''Purpose:'''<br />
** Store arbitrary data like medical images, meshes, videos<br />
** Connect with hospital PACS<br />
** Utilize flexible interfaces to access data in a privacy compliant way<br />
<br />
* '''Install XNAT:'''<br /> A detailed description about how to install XNAT can be found here: https://wiki.xnat.org/display/XNAT16/XNAT+1.6+Installation+Guide<br />
<br />
* '''XNAT Linked Data Wrapper:'''<br />
** Utilizes the comprehensice REST API of XNAT and converts its responses into linked data<br />
** Thus connects XNAT to the semantic data infrastructure.<br />
** Is available here: http://surgipedia.sfb125.de/wiki/XNAT_Wrapper<br />
** Contact Marco Nolden for detailed information<br />
<br />
=== Surgipedia - A semantic media wiki ===<br />
<br />
A [https://www.semantic-mediawiki.org/wiki/Semantic_MediaWiki Semantic Media Wiki] is an extension to the Media Wiki that can be used as an flexible knowledge management system.<br />
<br />
* '''Purpose:'''<br />
** Integrate with and link to external ontologies<br />
** Collaboratively model knowledge and ontologies<br />
** Create semantic data annotations<br />
<br />
* '''Install semantic media wiki:'''<br /> A detailed description about how to install a semantic media wiki can be found here: https://www.semantic-mediawiki.org/wiki/Help:Installation<br />
<br />
* '''Surgipedia:'''<br /> Our semantic media wiki instance: https://surgipedia.sfb125.de<br />
<br />
=== Linked data crawler ===<br />
We use LDSpider for crawling the different components of our infrastructure<br />
<br />
* '''Purpose:''':<br />
** Is able to consume and traverse the web of linked data<br />
** Aggregates both the contents of the semantic media wiki and XNAT into a central triple store.<br />
<br />
* '''Install LDSpider''':<br />Detailed information about LDSpider, the linked data crawler we are using, can be found here: https://github.com/ldspider/ldspider<br />
<br />
=== Triple Store ===<br />
<br />
A triple store is a data base which is especially designed for handling linked data from the semantic web. There are many triple store implementations available and the choice which you want to use is up to you. Here is a small selection of available triple stores:<br />
<br />
* [http://virtuoso.openlinksw.com OpenLink Virtuoso] (The one we are using)<br />
* [http://librdf.org Redland]<br />
* [https://jena.apache.org Apache Jena]<br />
<br />
* '''Purpose:'''<br />
** Constitutes the unified semantic interface to the entire infrastructure including the different connected components<br />
** Allow to perform comprehensive semantic operation on the entire data set, e.g. semantic reasoning<br />
<br />
* '''Install OpenVirtuoso:'''<br /> How to install OpenVirtuoso can be found here: http://virtuoso.openlinksw.com/dataspace/doc/dav/wiki/Main/VOSBuild<br />
<br />
* '''Link to our triple store:'''<br />We are planning to provide parts of our knowledge base as open data for the community. This is work in progress.<br />
<br />
== Cognition-Guided Surgery Workbench ==<br />
<br />
The CGS Workbench is an MITK-based desktop application, which provides both flexibility and extensibility for methods integration and unified interfaces to the proposed infrastructure. The following figure shows a screenshot of the CGS Workbench and of the different interfaces which allow both, the integration of processing modules like Python scripts or commandline modules and the connection to our infrastructure.<br />
<br />
[[File:cgs-workbench.png|center|700px| An screenshot of the CGS Workbench]]<br />
<br />
'''Core-features of the CGS Workbench are:'''<br />
* DICOM viewing<br />
* Image processing: Segmentation, measurement, image statistics<br />
* XNAT connection: Browse, up- and download your data from XNAT<br />
* Triple store connection: Query / Insertion of triples<br />
* Semantic data annotation: Create annotation files, upload annotation to XNAT or insert directly into the triple store<br />
<br />
'''How to get it?'''<br />
* Source code as well as binary installers can be found here: https://projects.sfb125.de (registration required)<br />
* Or contact Marco Nolden / Jasmin Metzger</div>AndreasFetzerhttp://mitk.org/w/index.php?title=File:Cgs-workbench.png&diff=2910File:Cgs-workbench.png2016-02-09T11:50:27Z<p>AndreasFetzer: </p>
<hr />
<div></div>AndreasFetzerhttp://mitk.org/w/index.php?title=CGS&diff=2909CGS2016-02-09T11:50:12Z<p>AndreasFetzer: </p>
<hr />
<div>== Overview ==<br />
<br />
On this page you can find detailed information about how to build up the semantic data infrastructure that is published in:<br />
<br />
<pre style="background:Gainsboro;<br />
font-size: 80%;">Fetzer, A., J. Metzger, D. Katic, K. März, M. Wagner et al.,<br />
"Towards an open-source semantic data infrastructure for integrating clinical and scientific data in cognition-guided surgery.",<br />
in Proc. SPIE Medical Imaging 2016 "PACS and Imaging Informatics: Next Generation and Innovations", 9789-22, (2016) <br />
</pre><br />
<br />
The proposed infrastructure allows you to integrate heterogneous data sets and make them available via a unified interfaced. Also the data can be annotated and integrated semantically which facilitates complex semantic queries on the data.<br />
<br />
An overview about the components of the infrastructure is depicted in the figure below:<br />
<br />
[[File:cgs-infrastructure.png|border|center|700px| An overview of the architecture of the infrastructure]]<br />
<br />
Following we briefly describe the components and tools of the infrastructure and how to get/install them.<br />
<br />
== Semantic data infrastructure ==<br />
<br />
=== XNAT - A flexible data storage ===<br />
<br />
The Extensible Neuroimaging Archive Toolkit (XNAT) is a flexible data storage system. It is developed at the Washington University in St. Louis and focuses on storing medical image data but is capable to handle arbitrary data as well.<br />
<br />
* '''Purpose:'''<br />
** Store arbitrary data like medical images, meshes, videos<br />
** Connect with hospital PACS<br />
** Utilize flexible interfaces to access data in a privacy compliant way<br />
<br />
* '''Install XNAT:'''<br /> A detailed description about how to install XNAT can be found here: https://wiki.xnat.org/display/XNAT16/XNAT+1.6+Installation+Guide<br />
<br />
* '''XNAT Linked Data Wrapper:'''<br />
** Utilizes the comprehensice REST API of XNAT and converts its responses into linked data<br />
** Thus connects XNAT to the semantic data infrastructure.<br />
** Is available here: http://surgipedia.sfb125.de/wiki/XNAT_Wrapper<br />
** Contact Marco Nolden for detailed information<br />
<br />
=== Surgipedia - A semantic media wiki ===<br />
<br />
A [https://www.semantic-mediawiki.org/wiki/Semantic_MediaWiki Semantic Media Wiki] is an extension to the Media Wiki that can be used as an flexible knowledge management system.<br />
<br />
* '''Purpose:'''<br />
** Integrate with and link to external ontologies<br />
** Collaboratively model knowledge and ontologies<br />
** Create semantic data annotations<br />
<br />
* '''Install semantic media wiki:'''<br /> A detailed description about how to install a semantic media wiki can be found here: https://www.semantic-mediawiki.org/wiki/Help:Installation<br />
<br />
* '''Surgipedia:'''<br /> Our semantic media wiki instance: https://surgipedia.sfb125.de<br />
<br />
=== Linked data crawler ===<br />
We use LDSpider for crawling the different components of our infrastructure<br />
<br />
* '''Purpose:''':<br />
** Is able to consume and traverse the web of linked data<br />
** Aggregates both the contents of the semantic media wiki and XNAT into a central triple store.<br />
<br />
* '''Install LDSpider''':<br />Detailed information about LDSpider, the linked data crawler we are using, can be found here: https://github.com/ldspider/ldspider<br />
<br />
=== Triple Store ===<br />
<br />
A triple store is a data base which is especially designed for handling linked data from the semantic web. There are many triple store implementations available and the choice which you want to use is up to you. Here is a small selection of available triple stores:<br />
<br />
* [http://virtuoso.openlinksw.com OpenLink Virtuoso] (The one we are using)<br />
* [http://librdf.org Redland]<br />
* [https://jena.apache.org Apache Jena]<br />
<br />
* '''Purpose:'''<br />
** Constitutes the unified semantic interface to the entire infrastructure including the different connected components<br />
** Allow to perform comprehensive semantic operation on the entire data set, e.g. semantic reasoning<br />
<br />
* '''Install OpenVirtuoso:'''<br /> How to install OpenVirtuoso can be found here: http://virtuoso.openlinksw.com/dataspace/doc/dav/wiki/Main/VOSBuild<br />
<br />
* '''Link to our triple store:'''<br />We are planning to provide parts of our knowledge base as open data for the community. This is work in progress.<br />
<br />
== Cognition-Guided Surgery Workbench ==<br />
<br />
The CGS Workbench is an MITK-based desktop application, which provides both flexibility and extensibility for methods integration and unified interfaces to the proposed infrastructure. The following figure shows a screenshot of the CGS Workbench and of the different interfaces which allow both, the integration of processing modules like Python scripts or commandline modules and the connection to our infrastructure.<br />
<br />
[[File:cgs-workbench.png|border|center|700px| An screenshot of the CGS Workbench]]<br />
<br />
'''Core-features of the CGS Workbench are:'''<br />
* DICOM viewing<br />
* Image processing: Segmentation, measurement, image statistics<br />
* XNAT connection: Browse, up- and download your data from XNAT<br />
* Triple store connection: Query / Insertion of triples<br />
* Semantic data annotation: Create annotation files, upload annotation to XNAT or insert directly into the triple store<br />
<br />
'''How to get it?'''<br />
* Source code as well as binary installers can be found here: https://projects.sfb125.de (registration required)<br />
* Or contact Marco Nolden / Jasmin Metzger</div>AndreasFetzerhttp://mitk.org/w/index.php?title=CGS&diff=2908CGS2016-02-09T11:46:53Z<p>AndreasFetzer: /* Cognition-Guided Surgery Workbench */</p>
<hr />
<div>== Overview ==<br />
<br />
On this page you can find detailed information about how to build up the semantic data infrastructure that is published in:<br />
<br />
<pre style="background:Gainsboro;<br />
font-size: 80%;">Fetzer, A., J. Metzger, D. Katic, K. März, M. Wagner et al.,<br />
"Towards an open-source semantic data infrastructure for integrating clinical and scientific data in cognition-guided surgery.",<br />
in Proc. SPIE Medical Imaging 2016 "PACS and Imaging Informatics: Next Generation and Innovations", 9789-22, (2016) <br />
</pre><br />
<br />
The proposed infrastructure allows you to integrate heterogneous data sets and make them available via a unified interfaced. Also the data can be annotated and integrated semantically which facilitates complex semantic queries on the data.<br />
<br />
An overview about the components of the infrastructure is depicted in the figure below:<br />
<br />
[[File:cgs-infrastructure.png|border|center|700px| An overview of the architecture of the infrastructure]]<br />
<br />
Following we briefly describe the components and tools of the infrastructure and how to get/install them.<br />
<br />
== Semantic data infrastructure ==<br />
<br />
=== XNAT - A flexible data storage ===<br />
<br />
The Extensible Neuroimaging Archive Toolkit (XNAT) is a flexible data storage system. It is developed at the Washington University in St. Louis and focuses on storing medical image data but is capable to handle arbitrary data as well.<br />
<br />
* '''Purpose:'''<br />
** Store arbitrary data like medical images, meshes, videos<br />
** Connect with hospital PACS<br />
** Utilize flexible interfaces to access data in a privacy compliant way<br />
<br />
* '''Install XNAT:'''<br /> A detailed description about how to install XNAT can be found here: https://wiki.xnat.org/display/XNAT16/XNAT+1.6+Installation+Guide<br />
<br />
* '''XNAT Linked Data Wrapper:'''<br />
** Utilizes the comprehensice REST API of XNAT and converts its responses into linked data<br />
** Thus connects XNAT to the semantic data infrastructure.<br />
** Is available here: http://surgipedia.sfb125.de/wiki/XNAT_Wrapper<br />
** Contact Marco Nolden for detailed information<br />
<br />
=== Surgipedia - A semantic media wiki ===<br />
<br />
A [https://www.semantic-mediawiki.org/wiki/Semantic_MediaWiki Semantic Media Wiki] is an extension to the Media Wiki that can be used as an flexible knowledge management system.<br />
<br />
* '''Purpose:'''<br />
** Integrate with and link to external ontologies<br />
** Collaboratively model knowledge and ontologies<br />
** Create semantic data annotations<br />
<br />
* '''Install semantic media wiki:'''<br /> A detailed description about how to install a semantic media wiki can be found here: https://www.semantic-mediawiki.org/wiki/Help:Installation<br />
<br />
* '''Surgipedia:'''<br /> Our semantic media wiki instance: https://surgipedia.sfb125.de<br />
<br />
=== Linked data crawler ===<br />
We use LDSpider for crawling the different components of our infrastructure<br />
<br />
* '''Purpose:''':<br />
** Is able to consume and traverse the web of linked data<br />
** Aggregates both the contents of the semantic media wiki and XNAT into a central triple store.<br />
<br />
* '''Install LDSpider''':<br />Detailed information about LDSpider, the linked data crawler we are using, can be found here: https://github.com/ldspider/ldspider<br />
<br />
=== Triple Store ===<br />
<br />
A triple store is a data base which is especially designed for handling linked data from the semantic web. There are many triple store implementations available and the choice which you want to use is up to you. Here is a small selection of available triple stores:<br />
<br />
* [http://virtuoso.openlinksw.com OpenLink Virtuoso] (The one we are using)<br />
* [http://librdf.org Redland]<br />
* [https://jena.apache.org Apache Jena]<br />
<br />
* '''Purpose:'''<br />
** Constitutes the unified semantic interface to the entire infrastructure including the different connected components<br />
** Allow to perform comprehensive semantic operation on the entire data set, e.g. semantic reasoning<br />
<br />
* '''Install OpenVirtuoso:'''<br /> How to install OpenVirtuoso can be found here: http://virtuoso.openlinksw.com/dataspace/doc/dav/wiki/Main/VOSBuild<br />
<br />
* '''Link to our triple store:'''<br />We are planning to provide parts of our knowledge base as open data for the community. This is work in progress.<br />
<br />
== Cognition-Guided Surgery Workbench ==<br />
<br />
The CGS Workbench is an MITK-based desktop application, which provides both flexibility and extensibility for methods integration and unified interfaces to the proposed infrastructure.<br />
<br />
'''Core-features of the CGS Workbench are:'''<br />
* DICOM viewing<br />
* Image processing: Segmentation, measurement, image statistics<br />
* XNAT connection: Browse, up- and download your data from XNAT<br />
* Triple store connection: Query / Insertion of triples<br />
* Semantic data annotation: Create annotation files, upload annotation to XNAT or insert directly into the triple store<br />
<br />
'''How to get it?'''<br />
* Source code as well as binary installers can be found here: https://projects.sfb125.de (registration required)<br />
* Or contact Marco Nolden / Jasmin Metzger</div>AndreasFetzerhttp://mitk.org/w/index.php?title=CGS&diff=2907CGS2016-02-09T11:46:04Z<p>AndreasFetzer: /* Triple Store */</p>
<hr />
<div>== Overview ==<br />
<br />
On this page you can find detailed information about how to build up the semantic data infrastructure that is published in:<br />
<br />
<pre style="background:Gainsboro;<br />
font-size: 80%;">Fetzer, A., J. Metzger, D. Katic, K. März, M. Wagner et al.,<br />
"Towards an open-source semantic data infrastructure for integrating clinical and scientific data in cognition-guided surgery.",<br />
in Proc. SPIE Medical Imaging 2016 "PACS and Imaging Informatics: Next Generation and Innovations", 9789-22, (2016) <br />
</pre><br />
<br />
The proposed infrastructure allows you to integrate heterogneous data sets and make them available via a unified interfaced. Also the data can be annotated and integrated semantically which facilitates complex semantic queries on the data.<br />
<br />
An overview about the components of the infrastructure is depicted in the figure below:<br />
<br />
[[File:cgs-infrastructure.png|border|center|700px| An overview of the architecture of the infrastructure]]<br />
<br />
Following we briefly describe the components and tools of the infrastructure and how to get/install them.<br />
<br />
== Semantic data infrastructure ==<br />
<br />
=== XNAT - A flexible data storage ===<br />
<br />
The Extensible Neuroimaging Archive Toolkit (XNAT) is a flexible data storage system. It is developed at the Washington University in St. Louis and focuses on storing medical image data but is capable to handle arbitrary data as well.<br />
<br />
* '''Purpose:'''<br />
** Store arbitrary data like medical images, meshes, videos<br />
** Connect with hospital PACS<br />
** Utilize flexible interfaces to access data in a privacy compliant way<br />
<br />
* '''Install XNAT:'''<br /> A detailed description about how to install XNAT can be found here: https://wiki.xnat.org/display/XNAT16/XNAT+1.6+Installation+Guide<br />
<br />
* '''XNAT Linked Data Wrapper:'''<br />
** Utilizes the comprehensice REST API of XNAT and converts its responses into linked data<br />
** Thus connects XNAT to the semantic data infrastructure.<br />
** Is available here: http://surgipedia.sfb125.de/wiki/XNAT_Wrapper<br />
** Contact Marco Nolden for detailed information<br />
<br />
=== Surgipedia - A semantic media wiki ===<br />
<br />
A [https://www.semantic-mediawiki.org/wiki/Semantic_MediaWiki Semantic Media Wiki] is an extension to the Media Wiki that can be used as an flexible knowledge management system.<br />
<br />
* '''Purpose:'''<br />
** Integrate with and link to external ontologies<br />
** Collaboratively model knowledge and ontologies<br />
** Create semantic data annotations<br />
<br />
* '''Install semantic media wiki:'''<br /> A detailed description about how to install a semantic media wiki can be found here: https://www.semantic-mediawiki.org/wiki/Help:Installation<br />
<br />
* '''Surgipedia:'''<br /> Our semantic media wiki instance: https://surgipedia.sfb125.de<br />
<br />
=== Linked data crawler ===<br />
We use LDSpider for crawling the different components of our infrastructure<br />
<br />
* '''Purpose:''':<br />
** Is able to consume and traverse the web of linked data<br />
** Aggregates both the contents of the semantic media wiki and XNAT into a central triple store.<br />
<br />
* '''Install LDSpider''':<br />Detailed information about LDSpider, the linked data crawler we are using, can be found here: https://github.com/ldspider/ldspider<br />
<br />
=== Triple Store ===<br />
<br />
A triple store is a data base which is especially designed for handling linked data from the semantic web. There are many triple store implementations available and the choice which you want to use is up to you. Here is a small selection of available triple stores:<br />
<br />
* [http://virtuoso.openlinksw.com OpenLink Virtuoso] (The one we are using)<br />
* [http://librdf.org Redland]<br />
* [https://jena.apache.org Apache Jena]<br />
<br />
* '''Purpose:'''<br />
** Constitutes the unified semantic interface to the entire infrastructure including the different connected components<br />
** Allow to perform comprehensive semantic operation on the entire data set, e.g. semantic reasoning<br />
<br />
* '''Install OpenVirtuoso:'''<br /> How to install OpenVirtuoso can be found here: http://virtuoso.openlinksw.com/dataspace/doc/dav/wiki/Main/VOSBuild<br />
<br />
* '''Link to our triple store:'''<br />We are planning to provide parts of our knowledge base as open data for the community. This is work in progress.<br />
<br />
== Cognition-Guided Surgery Workbench ==<br />
<br />
The CGS Workbench is an MITK-based desktop application, which provides both flexibility and extensibility for methods integration and unified interfaces to the proposed infrastructure.<br />
<br />
Core-features of the CGS Workbench are:<br />
* DICOM viewing<br />
* Image processing: Segmentation, measurement, image statistics<br />
* XNAT connection: Browse, up- and download your data from XNAT<br />
* Triple store connection: Query / Insertion of triples<br />
* Semantic data annotation: Create annotation files, upload annotation to XNAT or insert directly into the triple store<br />
<br />
How to get it?<br />
* Source code as well as binary installers can be found here: https://projects.sfb125.de (registration required)<br />
* Or contact Marco Nolden / Jasmin Metzger</div>AndreasFetzerhttp://mitk.org/w/index.php?title=CGS&diff=2906CGS2016-02-09T11:45:44Z<p>AndreasFetzer: </p>
<hr />
<div>== Overview ==<br />
<br />
On this page you can find detailed information about how to build up the semantic data infrastructure that is published in:<br />
<br />
<pre style="background:Gainsboro;<br />
font-size: 80%;">Fetzer, A., J. Metzger, D. Katic, K. März, M. Wagner et al.,<br />
"Towards an open-source semantic data infrastructure for integrating clinical and scientific data in cognition-guided surgery.",<br />
in Proc. SPIE Medical Imaging 2016 "PACS and Imaging Informatics: Next Generation and Innovations", 9789-22, (2016) <br />
</pre><br />
<br />
The proposed infrastructure allows you to integrate heterogneous data sets and make them available via a unified interfaced. Also the data can be annotated and integrated semantically which facilitates complex semantic queries on the data.<br />
<br />
An overview about the components of the infrastructure is depicted in the figure below:<br />
<br />
[[File:cgs-infrastructure.png|border|center|700px| An overview of the architecture of the infrastructure]]<br />
<br />
Following we briefly describe the components and tools of the infrastructure and how to get/install them.<br />
<br />
== Semantic data infrastructure ==<br />
<br />
=== XNAT - A flexible data storage ===<br />
<br />
The Extensible Neuroimaging Archive Toolkit (XNAT) is a flexible data storage system. It is developed at the Washington University in St. Louis and focuses on storing medical image data but is capable to handle arbitrary data as well.<br />
<br />
* '''Purpose:'''<br />
** Store arbitrary data like medical images, meshes, videos<br />
** Connect with hospital PACS<br />
** Utilize flexible interfaces to access data in a privacy compliant way<br />
<br />
* '''Install XNAT:'''<br /> A detailed description about how to install XNAT can be found here: https://wiki.xnat.org/display/XNAT16/XNAT+1.6+Installation+Guide<br />
<br />
* '''XNAT Linked Data Wrapper:'''<br />
** Utilizes the comprehensice REST API of XNAT and converts its responses into linked data<br />
** Thus connects XNAT to the semantic data infrastructure.<br />
** Is available here: http://surgipedia.sfb125.de/wiki/XNAT_Wrapper<br />
** Contact Marco Nolden for detailed information<br />
<br />
=== Surgipedia - A semantic media wiki ===<br />
<br />
A [https://www.semantic-mediawiki.org/wiki/Semantic_MediaWiki Semantic Media Wiki] is an extension to the Media Wiki that can be used as an flexible knowledge management system.<br />
<br />
* '''Purpose:'''<br />
** Integrate with and link to external ontologies<br />
** Collaboratively model knowledge and ontologies<br />
** Create semantic data annotations<br />
<br />
* '''Install semantic media wiki:'''<br /> A detailed description about how to install a semantic media wiki can be found here: https://www.semantic-mediawiki.org/wiki/Help:Installation<br />
<br />
* '''Surgipedia:'''<br /> Our semantic media wiki instance: https://surgipedia.sfb125.de<br />
<br />
=== Linked data crawler ===<br />
We use LDSpider for crawling the different components of our infrastructure<br />
<br />
* '''Purpose:''':<br />
** Is able to consume and traverse the web of linked data<br />
** Aggregates both the contents of the semantic media wiki and XNAT into a central triple store.<br />
<br />
* '''Install LDSpider''':<br />Detailed information about LDSpider, the linked data crawler we are using, can be found here: https://github.com/ldspider/ldspider<br />
<br />
=== Triple Store ===<br />
<br />
A triple store is a data base which is especially designed for handling linked data from the semantic web. There are many triple store implementations available and the choice which you want to use is up to you. Here is a small selection of available triple stores:<br />
<br />
* The one we are using: [http://virtuoso.openlinksw.com OpenLink Virtuoso]<br />
* [http://librdf.org Redland]<br />
* [https://jena.apache.org Apache Jena]<br />
<br />
* '''Purpose:'''<br />
** Constitutes the unified semantic interface to the entire infrastructure including the different connected components<br />
** Allow to perform comprehensive semantic operation on the entire data set, e.g. semantic reasoning<br />
<br />
* '''Install OpenVirtuoso:'''<br /> How to install OpenVirtuoso can be found here: http://virtuoso.openlinksw.com/dataspace/doc/dav/wiki/Main/VOSBuild<br />
<br />
* '''Link to our triple store:'''<br />We are planning to provide parts of our knowledge base as open data for the community. This is work in progress.<br />
<br />
== Cognition-Guided Surgery Workbench ==<br />
<br />
The CGS Workbench is an MITK-based desktop application, which provides both flexibility and extensibility for methods integration and unified interfaces to the proposed infrastructure.<br />
<br />
Core-features of the CGS Workbench are:<br />
* DICOM viewing<br />
* Image processing: Segmentation, measurement, image statistics<br />
* XNAT connection: Browse, up- and download your data from XNAT<br />
* Triple store connection: Query / Insertion of triples<br />
* Semantic data annotation: Create annotation files, upload annotation to XNAT or insert directly into the triple store<br />
<br />
How to get it?<br />
* Source code as well as binary installers can be found here: https://projects.sfb125.de (registration required)<br />
* Or contact Marco Nolden / Jasmin Metzger</div>AndreasFetzerhttp://mitk.org/w/index.php?title=CGS&diff=2905CGS2016-02-09T11:44:33Z<p>AndreasFetzer: /* Triple Store */</p>
<hr />
<div>== Overview ==<br />
<br />
On this page you can find detailed information about how to build up the semantic data infrastructure that is published in:<br />
<br />
<pre style="background:Gainsboro;<br />
font-size: 80%;">Fetzer, A., J. Metzger, D. Katic, K. März, M. Wagner et al.,<br />
"Towards an open-source semantic data infrastructure for integrating clinical and scientific data in cognition-guided surgery.",<br />
in Proc. SPIE Medical Imaging 2016 "PACS and Imaging Informatics: Next Generation and Innovations", 9789-22, (2016) <br />
</pre><br />
<br />
The proposed infrastructure allows you to integrate heterogneous data sets and make them available via a unified interfaced. Also the data can be annotated and integrated semantically which facilitates complex semantic queries on the data.<br />
<br />
An overview about the components of the infrastructure is depicted in the figure below:<br />
<br />
[[File:cgs-infrastructure.png|border|center|700px| An overview of the architecture of the infrastructure]]<br />
<br />
Following we briefly describe the components and tools of the infrastructure and how to get/install them.<br />
<br />
== Semantic data infrastructure ==<br />
<br />
=== XNAT - A flexible data storage ===<br />
<br />
The Extensible Neuroimaging Archive Toolkit (XNAT) is a flexible data storage system. It is developed at the Washington University in St. Louis and focuses on storing medical image data but is capable to handle arbitrary data as well.<br />
<br />
* '''Purpose:'''<br />
** Store arbitrary data like medical images, meshes, videos<br />
** Connect with hospital PACS<br />
** Utilize flexible interfaces to access data in a privacy compliant way<br />
<br />
* '''Install XNAT:'''<br /> A detailed description about how to install XNAT can be found here: https://wiki.xnat.org/display/XNAT16/XNAT+1.6+Installation+Guide<br />
<br />
* '''XNAT Linked Data Wrapper:'''<br />
** Utilizes the comprehensice REST API of XNAT and converts its responses into linked data<br />
** Thus connects XNAT to the semantic data infrastructure.<br />
** Is available here: http://surgipedia.sfb125.de/wiki/XNAT_Wrapper<br />
** Contact Marco Nolden for detailed information<br />
<br />
=== Surgipedia - A semantic media wiki ===<br />
<br />
A [https://www.semantic-mediawiki.org/wiki/Semantic_MediaWiki Semantic Media Wiki] is an extension to the Media Wiki that can be used as an flexible knowledge management system.<br />
<br />
* '''Purpose:'''<br />
** Integrate with and link to external ontologies<br />
** Collaboratively model knowledge and ontologies<br />
** Create semantic data annotations<br />
<br />
* '''Install semantic media wiki:'''<br /> A detailed description about how to install a semantic media wiki can be found here: https://www.semantic-mediawiki.org/wiki/Help:Installation<br />
<br />
* '''Surgipedia:'''<br /> Our semantic media wiki instance: https://surgipedia.sfb125.de<br />
<br />
=== Linked data crawler ===<br />
We use LDSpider for crawling the different components of our infrastructure<br />
<br />
* '''Purpose:''':<br />
** Is able to consume and traverse the web of linked data<br />
** Aggregates both the contents of the semantic media wiki and XNAT into a central triple store.<br />
<br />
* '''Install LDSpider''':<br />Detailed information about LDSpider, the linked data crawler we are using, can be found here: https://github.com/ldspider/ldspider<br />
<br />
=== Triple Store ===<br />
<br />
A triple store is a data base which is especially designed for handling linked data from the semantic web. There are many triple store implementations available and the choice which you want to use is up to you. Here is a small selection of available triple stores:<br />
<br />
* The one we are using: [OpenLink Virtuoso http://virtuoso.openlinksw.com]<br />
* [Redland http://librdf.org]<br />
* [Apache Jena https://jena.apache.org]<br />
<br />
* '''Purpose:'''<br />
** Constitutes the unified semantic interface to the entire infrastructure including the different connected components<br />
** Allow to perform comprehensive semantic operation on the entire data set, e.g. semantic reasoning<br />
<br />
* '''Install OpenVirtuoso:'''<br /> How to install OpenVirtuoso can be found here: http://virtuoso.openlinksw.com/dataspace/doc/dav/wiki/Main/VOSBuild<br />
<br />
* '''Link to our triple store:'''<br />We are planning to provide parts of our knowledge base as open data for the community. This is work in progress.<br />
<br />
== Cognition-Guided Surgery Workbench ==<br />
<br />
The CGS Workbench is an MITK-based desktop application, which provides both flexibility and extensibility for methods integration and unified interfaces to the proposed infrastructure.<br />
<br />
Core-features of the CGS Workbench are:<br />
* DICOM viewing<br />
* Image processing: Segmentation, measurement, image statistics<br />
* XNAT connection: Browse, up- and download your data from XNAT<br />
* Triple store connection: Query / Insertion of triples<br />
* Semantic data annotation: Create annotation files, upload annotation to XNAT or insert directly into the triple store<br />
<br />
How to get it?<br />
* Source code as well as binary installers can be found here: https://projects.sfb125.de (registration required)<br />
* Or contact Marco Nolden / Jasmin Metzger</div>AndreasFetzerhttp://mitk.org/w/index.php?title=CGS&diff=2904CGS2016-02-09T11:36:56Z<p>AndreasFetzer: /* Linked data crawler */</p>
<hr />
<div>== Overview ==<br />
<br />
On this page you can find detailed information about how to build up the semantic data infrastructure that is published in:<br />
<br />
<pre style="background:Gainsboro;<br />
font-size: 80%;">Fetzer, A., J. Metzger, D. Katic, K. März, M. Wagner et al.,<br />
"Towards an open-source semantic data infrastructure for integrating clinical and scientific data in cognition-guided surgery.",<br />
in Proc. SPIE Medical Imaging 2016 "PACS and Imaging Informatics: Next Generation and Innovations", 9789-22, (2016) <br />
</pre><br />
<br />
The proposed infrastructure allows you to integrate heterogneous data sets and make them available via a unified interfaced. Also the data can be annotated and integrated semantically which facilitates complex semantic queries on the data.<br />
<br />
An overview about the components of the infrastructure is depicted in the figure below:<br />
<br />
[[File:cgs-infrastructure.png|border|center|700px| An overview of the architecture of the infrastructure]]<br />
<br />
Following we briefly describe the components and tools of the infrastructure and how to get/install them.<br />
<br />
== Semantic data infrastructure ==<br />
<br />
=== XNAT - A flexible data storage ===<br />
<br />
The Extensible Neuroimaging Archive Toolkit (XNAT) is a flexible data storage system. It is developed at the Washington University in St. Louis and focuses on storing medical image data but is capable to handle arbitrary data as well.<br />
<br />
* '''Purpose:'''<br />
** Store arbitrary data like medical images, meshes, videos<br />
** Connect with hospital PACS<br />
** Utilize flexible interfaces to access data in a privacy compliant way<br />
<br />
* '''Install XNAT:'''<br /> A detailed description about how to install XNAT can be found here: https://wiki.xnat.org/display/XNAT16/XNAT+1.6+Installation+Guide<br />
<br />
* '''XNAT Linked Data Wrapper:'''<br />
** Utilizes the comprehensice REST API of XNAT and converts its responses into linked data<br />
** Thus connects XNAT to the semantic data infrastructure.<br />
** Is available here: http://surgipedia.sfb125.de/wiki/XNAT_Wrapper<br />
** Contact Marco Nolden for detailed information<br />
<br />
=== Surgipedia - A semantic media wiki ===<br />
<br />
A [https://www.semantic-mediawiki.org/wiki/Semantic_MediaWiki Semantic Media Wiki] is an extension to the Media Wiki that can be used as an flexible knowledge management system.<br />
<br />
* '''Purpose:'''<br />
** Integrate with and link to external ontologies<br />
** Collaboratively model knowledge and ontologies<br />
** Create semantic data annotations<br />
<br />
* '''Install semantic media wiki:'''<br /> A detailed description about how to install a semantic media wiki can be found here: https://www.semantic-mediawiki.org/wiki/Help:Installation<br />
<br />
* '''Surgipedia:'''<br /> Our semantic media wiki instance: https://surgipedia.sfb125.de<br />
<br />
=== Linked data crawler ===<br />
We use LDSpider for crawling the different components of our infrastructure<br />
<br />
* '''Purpose:''':<br />
** Is able to consume and traverse the web of linked data<br />
** Aggregates both the contents of the semantic media wiki and XNAT into a central triple store.<br />
<br />
* '''Install LDSpider''':<br />Detailed information about LDSpider, the linked data crawler we are using, can be found here: https://github.com/ldspider/ldspider<br />
<br />
=== Triple Store ===<br />
<br />
A triple store is a data base which is especially designed for handling linked data from the semantic web. There are many triple store implementations available and the choice which you want to use is up to you. Here is a small selection of available triple stores:<br />
<br />
* The one we are using: OpenLink Virtuoso<br />
* Redland<br />
* Apache Jena<br />
<br />
== Cognition-Guided Surgery Workbench ==<br />
<br />
The CGS Workbench is an MITK-based desktop application, which provides both flexibility and extensibility for methods integration and unified interfaces to the proposed infrastructure.<br />
<br />
Core-features of the CGS Workbench are:<br />
* DICOM viewing<br />
* Image processing: Segmentation, measurement, image statistics<br />
* XNAT connection: Browse, up- and download your data from XNAT<br />
* Triple store connection: Query / Insertion of triples<br />
* Semantic data annotation: Create annotation files, upload annotation to XNAT or insert directly into the triple store<br />
<br />
How to get it?<br />
* Source code as well as binary installers can be found here: https://projects.sfb125.de (registration required)<br />
* Or contact Marco Nolden / Jasmin Metzger</div>AndreasFetzerhttp://mitk.org/w/index.php?title=CGS&diff=2903CGS2016-02-09T11:32:31Z<p>AndreasFetzer: /* XNAT - A flexible data storage */</p>
<hr />
<div>== Overview ==<br />
<br />
On this page you can find detailed information about how to build up the semantic data infrastructure that is published in:<br />
<br />
<pre style="background:Gainsboro;<br />
font-size: 80%;">Fetzer, A., J. Metzger, D. Katic, K. März, M. Wagner et al.,<br />
"Towards an open-source semantic data infrastructure for integrating clinical and scientific data in cognition-guided surgery.",<br />
in Proc. SPIE Medical Imaging 2016 "PACS and Imaging Informatics: Next Generation and Innovations", 9789-22, (2016) <br />
</pre><br />
<br />
The proposed infrastructure allows you to integrate heterogneous data sets and make them available via a unified interfaced. Also the data can be annotated and integrated semantically which facilitates complex semantic queries on the data.<br />
<br />
An overview about the components of the infrastructure is depicted in the figure below:<br />
<br />
[[File:cgs-infrastructure.png|border|center|700px| An overview of the architecture of the infrastructure]]<br />
<br />
Following we briefly describe the components and tools of the infrastructure and how to get/install them.<br />
<br />
== Semantic data infrastructure ==<br />
<br />
=== XNAT - A flexible data storage ===<br />
<br />
The Extensible Neuroimaging Archive Toolkit (XNAT) is a flexible data storage system. It is developed at the Washington University in St. Louis and focuses on storing medical image data but is capable to handle arbitrary data as well.<br />
<br />
* '''Purpose:'''<br />
** Store arbitrary data like medical images, meshes, videos<br />
** Connect with hospital PACS<br />
** Utilize flexible interfaces to access data in a privacy compliant way<br />
<br />
* '''Install XNAT:'''<br /> A detailed description about how to install XNAT can be found here: https://wiki.xnat.org/display/XNAT16/XNAT+1.6+Installation+Guide<br />
<br />
* '''XNAT Linked Data Wrapper:'''<br />
** Utilizes the comprehensice REST API of XNAT and converts its responses into linked data<br />
** Thus connects XNAT to the semantic data infrastructure.<br />
** Is available here: http://surgipedia.sfb125.de/wiki/XNAT_Wrapper<br />
** Contact Marco Nolden for detailed information<br />
<br />
=== Surgipedia - A semantic media wiki ===<br />
<br />
A [https://www.semantic-mediawiki.org/wiki/Semantic_MediaWiki Semantic Media Wiki] is an extension to the Media Wiki that can be used as an flexible knowledge management system.<br />
<br />
* '''Purpose:'''<br />
** Integrate with and link to external ontologies<br />
** Collaboratively model knowledge and ontologies<br />
** Create semantic data annotations<br />
<br />
* '''Install semantic media wiki:'''<br /> A detailed description about how to install a semantic media wiki can be found here: https://www.semantic-mediawiki.org/wiki/Help:Installation<br />
<br />
* '''Surgipedia:'''<br /> Our semantic media wiki instance: https://surgipedia.sfb125.de<br />
<br />
=== Linked data crawler ===<br />
<br />
Both the contents of the semantic media wiki and XNAT are aggregated by a linked data web crawler into a central triple store.<br />
<br />
* Linked data crawler:<br />Detailed information about LDSpider, the linked data crawler we are using, can be found here: https://github.com/ldspider/ldspider<br />
<br />
=== Triple Store ===<br />
<br />
A triple store is a data base which is especially designed for handling linked data from the semantic web. There are many triple store implementations available and the choice which you want to use is up to you. Here is a small selection of available triple stores:<br />
<br />
* The one we are using: OpenLink Virtuoso<br />
* Redland<br />
* Apache Jena<br />
<br />
== Cognition-Guided Surgery Workbench ==<br />
<br />
The CGS Workbench is an MITK-based desktop application, which provides both flexibility and extensibility for methods integration and unified interfaces to the proposed infrastructure.<br />
<br />
Core-features of the CGS Workbench are:<br />
* DICOM viewing<br />
* Image processing: Segmentation, measurement, image statistics<br />
* XNAT connection: Browse, up- and download your data from XNAT<br />
* Triple store connection: Query / Insertion of triples<br />
* Semantic data annotation: Create annotation files, upload annotation to XNAT or insert directly into the triple store<br />
<br />
How to get it?<br />
* Source code as well as binary installers can be found here: https://projects.sfb125.de (registration required)<br />
* Or contact Marco Nolden / Jasmin Metzger</div>AndreasFetzerhttp://mitk.org/w/index.php?title=CGS&diff=2902CGS2016-02-09T11:30:52Z<p>AndreasFetzer: /* Surgipedia - A semantic media wiki */</p>
<hr />
<div>== Overview ==<br />
<br />
On this page you can find detailed information about how to build up the semantic data infrastructure that is published in:<br />
<br />
<pre style="background:Gainsboro;<br />
font-size: 80%;">Fetzer, A., J. Metzger, D. Katic, K. März, M. Wagner et al.,<br />
"Towards an open-source semantic data infrastructure for integrating clinical and scientific data in cognition-guided surgery.",<br />
in Proc. SPIE Medical Imaging 2016 "PACS and Imaging Informatics: Next Generation and Innovations", 9789-22, (2016) <br />
</pre><br />
<br />
The proposed infrastructure allows you to integrate heterogneous data sets and make them available via a unified interfaced. Also the data can be annotated and integrated semantically which facilitates complex semantic queries on the data.<br />
<br />
An overview about the components of the infrastructure is depicted in the figure below:<br />
<br />
[[File:cgs-infrastructure.png|border|center|700px| An overview of the architecture of the infrastructure]]<br />
<br />
Following we briefly describe the components and tools of the infrastructure and how to get/install them.<br />
<br />
== Semantic data infrastructure ==<br />
<br />
=== XNAT - A flexible data storage ===<br />
<br />
The Extensible Neuroimaging Archive Toolkit (XNAT) is a flexible data storage system. It is developed at the Washington University in St. Louis and focuses on storing medical image data but is capable to handle arbitrary data as well.<br />
<br />
* '''Install XNAT:'''<br /> A detailed description about how to install XNAT can be found here: https://wiki.xnat.org/display/XNAT16/XNAT+1.6+Installation+Guide<br />
<br />
* '''XNAT Linked Data Wrapper:'''<br />
** Utilizes the comprehensice REST API of XNAT and converts its responses into linked data<br />
** Thus connects XNAT to the semantic data infrastructure.<br />
** Is available here: http://surgipedia.sfb125.de/wiki/XNAT_Wrapper<br />
** Contact Marco Nolden for detailed information<br />
<br />
=== Surgipedia - A semantic media wiki ===<br />
<br />
A [https://www.semantic-mediawiki.org/wiki/Semantic_MediaWiki Semantic Media Wiki] is an extension to the Media Wiki that can be used as an flexible knowledge management system.<br />
<br />
* '''Purpose:'''<br />
** Integrate with and link to external ontologies<br />
** Collaboratively model knowledge and ontologies<br />
** Create semantic data annotations<br />
<br />
* '''Install semantic media wiki:'''<br /> A detailed description about how to install a semantic media wiki can be found here: https://www.semantic-mediawiki.org/wiki/Help:Installation<br />
<br />
* '''Surgipedia:'''<br /> Our semantic media wiki instance: https://surgipedia.sfb125.de<br />
<br />
=== Linked data crawler ===<br />
<br />
Both the contents of the semantic media wiki and XNAT are aggregated by a linked data web crawler into a central triple store.<br />
<br />
* Linked data crawler:<br />Detailed information about LDSpider, the linked data crawler we are using, can be found here: https://github.com/ldspider/ldspider<br />
<br />
=== Triple Store ===<br />
<br />
A triple store is a data base which is especially designed for handling linked data from the semantic web. There are many triple store implementations available and the choice which you want to use is up to you. Here is a small selection of available triple stores:<br />
<br />
* The one we are using: OpenLink Virtuoso<br />
* Redland<br />
* Apache Jena<br />
<br />
== Cognition-Guided Surgery Workbench ==<br />
<br />
The CGS Workbench is an MITK-based desktop application, which provides both flexibility and extensibility for methods integration and unified interfaces to the proposed infrastructure.<br />
<br />
Core-features of the CGS Workbench are:<br />
* DICOM viewing<br />
* Image processing: Segmentation, measurement, image statistics<br />
* XNAT connection: Browse, up- and download your data from XNAT<br />
* Triple store connection: Query / Insertion of triples<br />
* Semantic data annotation: Create annotation files, upload annotation to XNAT or insert directly into the triple store<br />
<br />
How to get it?<br />
* Source code as well as binary installers can be found here: https://projects.sfb125.de (registration required)<br />
* Or contact Marco Nolden / Jasmin Metzger</div>AndreasFetzerhttp://mitk.org/w/index.php?title=CGS&diff=2901CGS2016-02-09T11:29:02Z<p>AndreasFetzer: /* Surgipedia - A semantic media wiki */</p>
<hr />
<div>== Overview ==<br />
<br />
On this page you can find detailed information about how to build up the semantic data infrastructure that is published in:<br />
<br />
<pre style="background:Gainsboro;<br />
font-size: 80%;">Fetzer, A., J. Metzger, D. Katic, K. März, M. Wagner et al.,<br />
"Towards an open-source semantic data infrastructure for integrating clinical and scientific data in cognition-guided surgery.",<br />
in Proc. SPIE Medical Imaging 2016 "PACS and Imaging Informatics: Next Generation and Innovations", 9789-22, (2016) <br />
</pre><br />
<br />
The proposed infrastructure allows you to integrate heterogneous data sets and make them available via a unified interfaced. Also the data can be annotated and integrated semantically which facilitates complex semantic queries on the data.<br />
<br />
An overview about the components of the infrastructure is depicted in the figure below:<br />
<br />
[[File:cgs-infrastructure.png|border|center|700px| An overview of the architecture of the infrastructure]]<br />
<br />
Following we briefly describe the components and tools of the infrastructure and how to get/install them.<br />
<br />
== Semantic data infrastructure ==<br />
<br />
=== XNAT - A flexible data storage ===<br />
<br />
The Extensible Neuroimaging Archive Toolkit (XNAT) is a flexible data storage system. It is developed at the Washington University in St. Louis and focuses on storing medical image data but is capable to handle arbitrary data as well.<br />
<br />
* '''Install XNAT:'''<br /> A detailed description about how to install XNAT can be found here: https://wiki.xnat.org/display/XNAT16/XNAT+1.6+Installation+Guide<br />
<br />
* '''XNAT Linked Data Wrapper:'''<br />
** Utilizes the comprehensice REST API of XNAT and converts its responses into linked data<br />
** Thus connects XNAT to the semantic data infrastructure.<br />
** Is available here: http://surgipedia.sfb125.de/wiki/XNAT_Wrapper<br />
** Contact Marco Nolden for detailed information<br />
<br />
=== Surgipedia - A semantic media wiki ===<br />
<br />
A [https://www.semantic-mediawiki.org/wiki/Semantic_MediaWiki Semantic Media Wiki] is an extension to the Media Wiki that can be used as an flexible knowledge management system.<br />
<br />
* '''Install semantic media wiki:'''<br /> A detailed description about how to install a semantic media wiki can be found here: https://www.semantic-mediawiki.org/wiki/Help:Installation<br />
<br />
* '''Surgipedia:'''<br /> Our semantic media wiki instance: https://surgipedia.sfb125.de<br />
<br />
=== Linked data crawler ===<br />
<br />
Both the contents of the semantic media wiki and XNAT are aggregated by a linked data web crawler into a central triple store.<br />
<br />
* Linked data crawler:<br />Detailed information about LDSpider, the linked data crawler we are using, can be found here: https://github.com/ldspider/ldspider<br />
<br />
=== Triple Store ===<br />
<br />
A triple store is a data base which is especially designed for handling linked data from the semantic web. There are many triple store implementations available and the choice which you want to use is up to you. Here is a small selection of available triple stores:<br />
<br />
* The one we are using: OpenLink Virtuoso<br />
* Redland<br />
* Apache Jena<br />
<br />
== Cognition-Guided Surgery Workbench ==<br />
<br />
The CGS Workbench is an MITK-based desktop application, which provides both flexibility and extensibility for methods integration and unified interfaces to the proposed infrastructure.<br />
<br />
Core-features of the CGS Workbench are:<br />
* DICOM viewing<br />
* Image processing: Segmentation, measurement, image statistics<br />
* XNAT connection: Browse, up- and download your data from XNAT<br />
* Triple store connection: Query / Insertion of triples<br />
* Semantic data annotation: Create annotation files, upload annotation to XNAT or insert directly into the triple store<br />
<br />
How to get it?<br />
* Source code as well as binary installers can be found here: https://projects.sfb125.de (registration required)<br />
* Or contact Marco Nolden / Jasmin Metzger</div>AndreasFetzerhttp://mitk.org/w/index.php?title=CGS&diff=2900CGS2016-02-09T11:28:18Z<p>AndreasFetzer: /* Surgipedia - A semantic media wiki */</p>
<hr />
<div>== Overview ==<br />
<br />
On this page you can find detailed information about how to build up the semantic data infrastructure that is published in:<br />
<br />
<pre style="background:Gainsboro;<br />
font-size: 80%;">Fetzer, A., J. Metzger, D. Katic, K. März, M. Wagner et al.,<br />
"Towards an open-source semantic data infrastructure for integrating clinical and scientific data in cognition-guided surgery.",<br />
in Proc. SPIE Medical Imaging 2016 "PACS and Imaging Informatics: Next Generation and Innovations", 9789-22, (2016) <br />
</pre><br />
<br />
The proposed infrastructure allows you to integrate heterogneous data sets and make them available via a unified interfaced. Also the data can be annotated and integrated semantically which facilitates complex semantic queries on the data.<br />
<br />
An overview about the components of the infrastructure is depicted in the figure below:<br />
<br />
[[File:cgs-infrastructure.png|border|center|700px| An overview of the architecture of the infrastructure]]<br />
<br />
Following we briefly describe the components and tools of the infrastructure and how to get/install them.<br />
<br />
== Semantic data infrastructure ==<br />
<br />
=== XNAT - A flexible data storage ===<br />
<br />
The Extensible Neuroimaging Archive Toolkit (XNAT) is a flexible data storage system. It is developed at the Washington University in St. Louis and focuses on storing medical image data but is capable to handle arbitrary data as well.<br />
<br />
* '''Install XNAT:'''<br /> A detailed description about how to install XNAT can be found here: https://wiki.xnat.org/display/XNAT16/XNAT+1.6+Installation+Guide<br />
<br />
* '''XNAT Linked Data Wrapper:'''<br />
** Utilizes the comprehensice REST API of XNAT and converts its responses into linked data<br />
** Thus connects XNAT to the semantic data infrastructure.<br />
** Is available here: http://surgipedia.sfb125.de/wiki/XNAT_Wrapper<br />
** Contact Marco Nolden for detailed information<br />
<br />
=== Surgipedia - A semantic media wiki ===<br />
<br />
A [https://www.semantic-mediawiki.org/wiki/Semantic_MediaWiki Semantic Media Wiki] is an extension to the Media Wiki that can be used as an flexible knowledge management system.<br />
<br />
* How to install semantic media wiki:<br /> A detailed description about how to install a semantic media wiki can be found here: https://www.semantic-mediawiki.org/wiki/Help:Installation<br />
<br />
* Have a look at Surgipedia, our semantic media wiki instance: https://surgipedia.sfb125.de<br />
<br />
=== Linked data crawler ===<br />
<br />
Both the contents of the semantic media wiki and XNAT are aggregated by a linked data web crawler into a central triple store.<br />
<br />
* Linked data crawler:<br />Detailed information about LDSpider, the linked data crawler we are using, can be found here: https://github.com/ldspider/ldspider<br />
<br />
=== Triple Store ===<br />
<br />
A triple store is a data base which is especially designed for handling linked data from the semantic web. There are many triple store implementations available and the choice which you want to use is up to you. Here is a small selection of available triple stores:<br />
<br />
* The one we are using: OpenLink Virtuoso<br />
* Redland<br />
* Apache Jena<br />
<br />
== Cognition-Guided Surgery Workbench ==<br />
<br />
The CGS Workbench is an MITK-based desktop application, which provides both flexibility and extensibility for methods integration and unified interfaces to the proposed infrastructure.<br />
<br />
Core-features of the CGS Workbench are:<br />
* DICOM viewing<br />
* Image processing: Segmentation, measurement, image statistics<br />
* XNAT connection: Browse, up- and download your data from XNAT<br />
* Triple store connection: Query / Insertion of triples<br />
* Semantic data annotation: Create annotation files, upload annotation to XNAT or insert directly into the triple store<br />
<br />
How to get it?<br />
* Source code as well as binary installers can be found here: https://projects.sfb125.de (registration required)<br />
* Or contact Marco Nolden / Jasmin Metzger</div>AndreasFetzerhttp://mitk.org/w/index.php?title=CGS&diff=2899CGS2016-02-09T11:26:46Z<p>AndreasFetzer: /* XNAT - A flexible data storage */</p>
<hr />
<div>== Overview ==<br />
<br />
On this page you can find detailed information about how to build up the semantic data infrastructure that is published in:<br />
<br />
<pre style="background:Gainsboro;<br />
font-size: 80%;">Fetzer, A., J. Metzger, D. Katic, K. März, M. Wagner et al.,<br />
"Towards an open-source semantic data infrastructure for integrating clinical and scientific data in cognition-guided surgery.",<br />
in Proc. SPIE Medical Imaging 2016 "PACS and Imaging Informatics: Next Generation and Innovations", 9789-22, (2016) <br />
</pre><br />
<br />
The proposed infrastructure allows you to integrate heterogneous data sets and make them available via a unified interfaced. Also the data can be annotated and integrated semantically which facilitates complex semantic queries on the data.<br />
<br />
An overview about the components of the infrastructure is depicted in the figure below:<br />
<br />
[[File:cgs-infrastructure.png|border|center|700px| An overview of the architecture of the infrastructure]]<br />
<br />
Following we briefly describe the components and tools of the infrastructure and how to get/install them.<br />
<br />
== Semantic data infrastructure ==<br />
<br />
=== XNAT - A flexible data storage ===<br />
<br />
The Extensible Neuroimaging Archive Toolkit (XNAT) is a flexible data storage system. It is developed at the Washington University in St. Louis and focuses on storing medical image data but is capable to handle arbitrary data as well.<br />
<br />
* '''Install XNAT:'''<br /> A detailed description about how to install XNAT can be found here: https://wiki.xnat.org/display/XNAT16/XNAT+1.6+Installation+Guide<br />
<br />
* '''XNAT Linked Data Wrapper:'''<br />
** Utilizes the comprehensice REST API of XNAT and converts its responses into linked data<br />
** Thus connects XNAT to the semantic data infrastructure.<br />
** Is available here: http://surgipedia.sfb125.de/wiki/XNAT_Wrapper<br />
** Contact Marco Nolden for detailed information<br />
<br />
=== Surgipedia - A semantic media wiki ===<br />
<br />
[https://www.semantic-mediawiki.org/wiki/Semantic_MediaWiki Semantic Media Wiki] is an extension to the Media Wiki that can be used as an flexible knowledge management system.<br />
<br />
* How to install semantic media wiki:<br /> A detailed description about how to install a semantic media wiki can be found here: https://www.semantic-mediawiki.org/wiki/Help:Installation<br />
<br />
* Have a look at Surgipedia, our semantic media wiki instance: https://surgipedia.sfb125.de<br />
<br />
=== Linked data crawler ===<br />
<br />
Both the contents of the semantic media wiki and XNAT are aggregated by a linked data web crawler into a central triple store.<br />
<br />
* Linked data crawler:<br />Detailed information about LDSpider, the linked data crawler we are using, can be found here: https://github.com/ldspider/ldspider<br />
<br />
=== Triple Store ===<br />
<br />
A triple store is a data base which is especially designed for handling linked data from the semantic web. There are many triple store implementations available and the choice which you want to use is up to you. Here is a small selection of available triple stores:<br />
<br />
* The one we are using: OpenLink Virtuoso<br />
* Redland<br />
* Apache Jena<br />
<br />
== Cognition-Guided Surgery Workbench ==<br />
<br />
The CGS Workbench is an MITK-based desktop application, which provides both flexibility and extensibility for methods integration and unified interfaces to the proposed infrastructure.<br />
<br />
Core-features of the CGS Workbench are:<br />
* DICOM viewing<br />
* Image processing: Segmentation, measurement, image statistics<br />
* XNAT connection: Browse, up- and download your data from XNAT<br />
* Triple store connection: Query / Insertion of triples<br />
* Semantic data annotation: Create annotation files, upload annotation to XNAT or insert directly into the triple store<br />
<br />
How to get it?<br />
* Source code as well as binary installers can be found here: https://projects.sfb125.de (registration required)<br />
* Or contact Marco Nolden / Jasmin Metzger</div>AndreasFetzerhttp://mitk.org/w/index.php?title=CGS&diff=2898CGS2016-02-09T11:26:27Z<p>AndreasFetzer: /* XNAT - A flexible data storage */</p>
<hr />
<div>== Overview ==<br />
<br />
On this page you can find detailed information about how to build up the semantic data infrastructure that is published in:<br />
<br />
<pre style="background:Gainsboro;<br />
font-size: 80%;">Fetzer, A., J. Metzger, D. Katic, K. März, M. Wagner et al.,<br />
"Towards an open-source semantic data infrastructure for integrating clinical and scientific data in cognition-guided surgery.",<br />
in Proc. SPIE Medical Imaging 2016 "PACS and Imaging Informatics: Next Generation and Innovations", 9789-22, (2016) <br />
</pre><br />
<br />
The proposed infrastructure allows you to integrate heterogneous data sets and make them available via a unified interfaced. Also the data can be annotated and integrated semantically which facilitates complex semantic queries on the data.<br />
<br />
An overview about the components of the infrastructure is depicted in the figure below:<br />
<br />
[[File:cgs-infrastructure.png|border|center|700px| An overview of the architecture of the infrastructure]]<br />
<br />
Following we briefly describe the components and tools of the infrastructure and how to get/install them.<br />
<br />
== Semantic data infrastructure ==<br />
<br />
=== XNAT - A flexible data storage ===<br />
<br />
The Extensible Neuroimaging Archive Toolkit (XNAT) is a flexible data storage system. It is developed at the Washington University in St. Louis and focuses on storing medical image data but is capable to handle arbitrary data as well.<br />
<br />
* Install XNAT:<br /> A detailed description about how to install XNAT can be found here: https://wiki.xnat.org/display/XNAT16/XNAT+1.6+Installation+Guide<br />
<br />
* XNAT Linked Data Wrapper:<br />
** Utilizes the comprehensice REST API of XNAT and converts its responses into linked data<br />
** Thus connects XNAT to the semantic data infrastructure.<br />
** Is available here: http://surgipedia.sfb125.de/wiki/XNAT_Wrapper<br />
** Contact Marco Nolden for detailed information<br />
<br />
=== Surgipedia - A semantic media wiki ===<br />
<br />
[https://www.semantic-mediawiki.org/wiki/Semantic_MediaWiki Semantic Media Wiki] is an extension to the Media Wiki that can be used as an flexible knowledge management system.<br />
<br />
* How to install semantic media wiki:<br /> A detailed description about how to install a semantic media wiki can be found here: https://www.semantic-mediawiki.org/wiki/Help:Installation<br />
<br />
* Have a look at Surgipedia, our semantic media wiki instance: https://surgipedia.sfb125.de<br />
<br />
=== Linked data crawler ===<br />
<br />
Both the contents of the semantic media wiki and XNAT are aggregated by a linked data web crawler into a central triple store.<br />
<br />
* Linked data crawler:<br />Detailed information about LDSpider, the linked data crawler we are using, can be found here: https://github.com/ldspider/ldspider<br />
<br />
=== Triple Store ===<br />
<br />
A triple store is a data base which is especially designed for handling linked data from the semantic web. There are many triple store implementations available and the choice which you want to use is up to you. Here is a small selection of available triple stores:<br />
<br />
* The one we are using: OpenLink Virtuoso<br />
* Redland<br />
* Apache Jena<br />
<br />
== Cognition-Guided Surgery Workbench ==<br />
<br />
The CGS Workbench is an MITK-based desktop application, which provides both flexibility and extensibility for methods integration and unified interfaces to the proposed infrastructure.<br />
<br />
Core-features of the CGS Workbench are:<br />
* DICOM viewing<br />
* Image processing: Segmentation, measurement, image statistics<br />
* XNAT connection: Browse, up- and download your data from XNAT<br />
* Triple store connection: Query / Insertion of triples<br />
* Semantic data annotation: Create annotation files, upload annotation to XNAT or insert directly into the triple store<br />
<br />
How to get it?<br />
* Source code as well as binary installers can be found here: https://projects.sfb125.de (registration required)<br />
* Or contact Marco Nolden / Jasmin Metzger</div>AndreasFetzerhttp://mitk.org/w/index.php?title=CGS&diff=2897CGS2016-02-09T11:23:35Z<p>AndreasFetzer: /* XNAT - A flexible data storage */</p>
<hr />
<div>== Overview ==<br />
<br />
On this page you can find detailed information about how to build up the semantic data infrastructure that is published in:<br />
<br />
<pre style="background:Gainsboro;<br />
font-size: 80%;">Fetzer, A., J. Metzger, D. Katic, K. März, M. Wagner et al.,<br />
"Towards an open-source semantic data infrastructure for integrating clinical and scientific data in cognition-guided surgery.",<br />
in Proc. SPIE Medical Imaging 2016 "PACS and Imaging Informatics: Next Generation and Innovations", 9789-22, (2016) <br />
</pre><br />
<br />
The proposed infrastructure allows you to integrate heterogneous data sets and make them available via a unified interfaced. Also the data can be annotated and integrated semantically which facilitates complex semantic queries on the data.<br />
<br />
An overview about the components of the infrastructure is depicted in the figure below:<br />
<br />
[[File:cgs-infrastructure.png|border|center|700px| An overview of the architecture of the infrastructure]]<br />
<br />
Following we briefly describe the components and tools of the infrastructure and how to get/install them.<br />
<br />
== Semantic data infrastructure ==<br />
<br />
=== XNAT - A flexible data storage ===<br />
<br />
The Extensible Neuroimaging Archive Toolkit (XNAT) is a flexible data storage system. It is developed at the Washington University in St. Louis and focuses on storing medical image data but is capable to handle arbitrary data as well.<br />
<br />
* How to install XNAT:<br /> A detailed description about how to install XNAT can be found here: https://wiki.xnat.org/display/XNAT16/XNAT+1.6+Installation+Guide<br />
<br />
* XNAT Linked Data Wrapper:<br />
** Connects XNAT to the semantic data infrastructure.<br />
** Is available here: http://surgipedia.sfb125.de/wiki/XNAT_Wrapper<br />
** Contact Marco Nolden for detailed information<br />
<br />
=== Surgipedia - A semantic media wiki ===<br />
<br />
[https://www.semantic-mediawiki.org/wiki/Semantic_MediaWiki Semantic Media Wiki] is an extension to the Media Wiki that can be used as an flexible knowledge management system.<br />
<br />
* How to install semantic media wiki:<br /> A detailed description about how to install a semantic media wiki can be found here: https://www.semantic-mediawiki.org/wiki/Help:Installation<br />
<br />
* Have a look at Surgipedia, our semantic media wiki instance: https://surgipedia.sfb125.de<br />
<br />
=== Linked data crawler ===<br />
<br />
Both the contents of the semantic media wiki and XNAT are aggregated by a linked data web crawler into a central triple store.<br />
<br />
* Linked data crawler:<br />Detailed information about LDSpider, the linked data crawler we are using, can be found here: https://github.com/ldspider/ldspider<br />
<br />
=== Triple Store ===<br />
<br />
A triple store is a data base which is especially designed for handling linked data from the semantic web. There are many triple store implementations available and the choice which you want to use is up to you. Here is a small selection of available triple stores:<br />
<br />
* The one we are using: OpenLink Virtuoso<br />
* Redland<br />
* Apache Jena<br />
<br />
== Cognition-Guided Surgery Workbench ==<br />
<br />
The CGS Workbench is an MITK-based desktop application, which provides both flexibility and extensibility for methods integration and unified interfaces to the proposed infrastructure.<br />
<br />
Core-features of the CGS Workbench are:<br />
* DICOM viewing<br />
* Image processing: Segmentation, measurement, image statistics<br />
* XNAT connection: Browse, up- and download your data from XNAT<br />
* Triple store connection: Query / Insertion of triples<br />
* Semantic data annotation: Create annotation files, upload annotation to XNAT or insert directly into the triple store<br />
<br />
How to get it?<br />
* Source code as well as binary installers can be found here: https://projects.sfb125.de (registration required)<br />
* Or contact Marco Nolden / Jasmin Metzger</div>AndreasFetzerhttp://mitk.org/w/index.php?title=File:Cgs-infrastructure.png&diff=2896File:Cgs-infrastructure.png2016-02-09T11:06:38Z<p>AndreasFetzer: AndreasFetzer uploaded a new version of &quot;File:Cgs-infrastructure.png&quot;</p>
<hr />
<div></div>AndreasFetzerhttp://mitk.org/w/index.php?title=CGS&diff=2895CGS2016-02-05T14:23:07Z<p>AndreasFetzer: </p>
<hr />
<div>== Overview ==<br />
<br />
On this page you can find detailed information about how to build up the semantic data infrastructure that is published in:<br />
<br />
<pre style="background:Gainsboro;<br />
font-size: 80%;">Fetzer, A., J. Metzger, D. Katic, K. März, M. Wagner et al.,<br />
"Towards an open-source semantic data infrastructure for integrating clinical and scientific data in cognition-guided surgery.",<br />
in Proc. SPIE Medical Imaging 2016 "PACS and Imaging Informatics: Next Generation and Innovations", 9789-22, (2016) <br />
</pre><br />
<br />
The proposed infrastructure allows you to integrate heterogneous data sets and make them available via a unified interfaced. Also the data can be annotated and integrated semantically which facilitates complex semantic queries on the data.<br />
<br />
An overview about the components of the infrastructure is depicted in the figure below:<br />
<br />
[[File:cgs-infrastructure.png|border|center|700px| An overview of the architecture of the infrastructure]]<br />
<br />
Following we briefly describe the components and tools of the infrastructure and how to get/install them.<br />
<br />
== Semantic data infrastructure ==<br />
<br />
=== XNAT - A flexible data storage ===<br />
<br />
The Extensible Neuroimaging Archive Toolkit (XNAT) is a flexible way to store primarily medical images. It is developed at the Washington University in St. Louis. We use XNAT to store mainly clinical image's and associated data.<br />
<br />
* How to install XNAT:<br /> A detailed description about how to install XNAT can be found here: https://wiki.xnat.org/display/XNAT16/XNAT+1.6+Installation+Guide<br />
<br />
* XNAT Linked Data Wrapper:<br />
** Connects XNAT to the semantic data infrastructure.<br />
** Is available here: http://surgipedia.sfb125.de/wiki/XNAT_Wrapper<br />
** Contact Marco Nolden for detailed information<br />
<br />
=== Surgipedia - A semantic media wiki ===<br />
<br />
[https://www.semantic-mediawiki.org/wiki/Semantic_MediaWiki Semantic Media Wiki] is an extension to the Media Wiki that can be used as an flexible knowledge management system.<br />
<br />
* How to install semantic media wiki:<br /> A detailed description about how to install a semantic media wiki can be found here: https://www.semantic-mediawiki.org/wiki/Help:Installation<br />
<br />
* Have a look at Surgipedia, our semantic media wiki instance: https://surgipedia.sfb125.de<br />
<br />
=== Linked data crawler ===<br />
<br />
Both the contents of the semantic media wiki and XNAT are aggregated by a linked data web crawler into a central triple store.<br />
<br />
* Linked data crawler:<br />Detailed information about LDSpider, the linked data crawler we are using, can be found here: https://github.com/ldspider/ldspider<br />
<br />
=== Triple Store ===<br />
<br />
A triple store is a data base which is especially designed for handling linked data from the semantic web. There are many triple store implementations available and the choice which you want to use is up to you. Here is a small selection of available triple stores:<br />
<br />
* The one we are using: OpenLink Virtuoso<br />
* Redland<br />
* Apache Jena<br />
<br />
== Cognition-Guided Surgery Workbench ==<br />
<br />
The CGS Workbench is an MITK-based desktop application, which provides both flexibility and extensibility for methods integration and unified interfaces to the proposed infrastructure.<br />
<br />
Core-features of the CGS Workbench are:<br />
* DICOM viewing<br />
* Image processing: Segmentation, measurement, image statistics<br />
* XNAT connection: Browse, up- and download your data from XNAT<br />
* Triple store connection: Query / Insertion of triples<br />
* Semantic data annotation: Create annotation files, upload annotation to XNAT or insert directly into the triple store<br />
<br />
How to get it?<br />
* Source code as well as binary installers can be found here: https://projects.sfb125.de (registration required)<br />
* Or contact Marco Nolden / Jasmin Metzger</div>AndreasFetzerhttp://mitk.org/w/index.php?title=CGS&diff=2894CGS2016-02-05T14:21:39Z<p>AndreasFetzer: </p>
<hr />
<div>== Overview ==<br />
<br />
On this page you can find detailed information about how to build up the semantic data infrastructure that is published in:<br />
<br />
<pre style="background:Gainsboro;<br />
font-size: 80%;">Fetzer, A., J. Metzger, D. Katic, K. März, M. Wagner et al.,<br />
"Towards an open-source semantic data infrastructure for integrating clinical and scientific data in cognition-guided surgery.",<br />
in Proc. SPIE Medical Imaging 2016 "PACS and Imaging Informatics: Next Generation and Innovations", 9789-22, (2016) <br />
</pre><br />
<br />
The proposed infrastructure allows you to integrate heterogneous data sets and make them available via a unified interfaced. Also the data can be annotated and integrated semantically which facilitates complex semantic queries on the data.<br />
<br />
An overview about the components of the infrastructure is depicted in the figure below:<br />
<br />
[[File:cgs-infrastructure.png|border| An overview of the architecture of the infrastructure]]<br />
<br />
Following we briefly describe the components and tools of the infrastructure and how to get/install them.<br />
<br />
== Semantic data infrastructure ==<br />
<br />
=== XNAT - A flexible data storage ===<br />
<br />
The Extensible Neuroimaging Archive Toolkit (XNAT) is a flexible way to store primarily medical images. It is developed at the Washington University in St. Louis. We use XNAT to store mainly clinical image's and associated data.<br />
<br />
* How to install XNAT:<br /> A detailed description about how to install XNAT can be found here: https://wiki.xnat.org/display/XNAT16/XNAT+1.6+Installation+Guide<br />
<br />
* XNAT Linked Data Wrapper:<br />
** Connects XNAT to the semantic data infrastructure.<br />
** Is available here: http://surgipedia.sfb125.de/wiki/XNAT_Wrapper<br />
** Contact Marco Nolden for detailed information<br />
<br />
=== Surgipedia - A semantic media wiki ===<br />
<br />
[https://www.semantic-mediawiki.org/wiki/Semantic_MediaWiki Semantic Media Wiki] is an extension to the Media Wiki that can be used as an flexible knowledge management system.<br />
<br />
* How to install semantic media wiki:<br /> A detailed description about how to install a semantic media wiki can be found here: https://www.semantic-mediawiki.org/wiki/Help:Installation<br />
<br />
* Have a look at Surgipedia, our semantic media wiki instance: https://surgipedia.sfb125.de<br />
<br />
=== Linked data crawler ===<br />
<br />
Both the contents of the semantic media wiki and XNAT are aggregated by a linked data web crawler into a central triple store.<br />
<br />
* Linked data crawler:<br />Detailed information about LDSpider, the linked data crawler we are using, can be found here: https://github.com/ldspider/ldspider<br />
<br />
=== Triple Store ===<br />
<br />
A triple store is a data base which is especially designed for handling linked data from the semantic web. There are many triple store implementations available and the choice which you want to use is up to you. Here is a small selection of available triple stores:<br />
<br />
* The one we are using: OpenLink Virtuoso<br />
* Redland<br />
* Apache Jena<br />
<br />
== Cognition-Guided Surgery Workbench ==<br />
<br />
The CGS Workbench is an MITK-based desktop application, which provides both flexibility and extensibility for methods integration and unified interfaces to the proposed infrastructure.<br />
<br />
Core-features of the CGS Workbench are:<br />
* DICOM viewing<br />
* Image processing: Segmentation, measurement, image statistics<br />
* XNAT connection: Browse, up- and download your data from XNAT<br />
* Triple store connection: Query / Insertion of triples<br />
* Semantic data annotation: Create annotation files, upload annotation to XNAT or insert directly into the triple store<br />
<br />
How to get it?<br />
* Source code as well as binary installers can be found here: https://projects.sfb125.de (registration required)<br />
* Or contact Marco Nolden / Jasmin Metzger</div>AndreasFetzerhttp://mitk.org/w/index.php?title=File:Cgs-infrastructure.png&diff=2893File:Cgs-infrastructure.png2016-02-05T14:21:06Z<p>AndreasFetzer: </p>
<hr />
<div></div>AndreasFetzerhttp://mitk.org/w/index.php?title=CGS&diff=2892CGS2016-02-05T14:19:31Z<p>AndreasFetzer: Created page with "== Overview == On this page you can find detailed information about how to build up the semantic data infrastructure that is published in: <pre style="background:Gainsboro;..."</p>
<hr />
<div>== Overview ==<br />
<br />
On this page you can find detailed information about how to build up the semantic data infrastructure that is published in:<br />
<br />
<pre style="background:Gainsboro;<br />
font-size: 80%;">Fetzer, A., J. Metzger, D. Katic, K. März, M. Wagner et al.,<br />
"Towards an open-source semantic data infrastructure for integrating clinical and scientific data in cognition-guided surgery.",<br />
in Proc. SPIE Medical Imaging 2016 "PACS and Imaging Informatics: Next Generation and Innovations", 9789-22, (2016) <br />
</pre><br />
<br />
The proposed infrastructure allows you to integrate heterogneous data sets and make them available via a unified interfaced. Also the data can be annotated and integrated semantically which facilitates complex semantic queries on the data.<br />
<br />
An overview about the components of the infrastructure is depicted in the figure below:<br />
<br />
[[File:cgs-infrastructure.jpg|border| An overview of the architecture of the infrastructure]]<br />
<br />
Following we briefly describe the components and tools of the infrastructure and how to get/install them.<br />
<br />
== Semantic data infrastructure ==<br />
<br />
=== XNAT - A flexible data storage ===<br />
<br />
The Extensible Neuroimaging Archive Toolkit (XNAT) is a flexible way to store primarily medical images. It is developed at the Washington University in St. Louis. We use XNAT to store mainly clinical image's and associated data.<br />
<br />
* How to install XNAT:<br /> A detailed description about how to install XNAT can be found here: https://wiki.xnat.org/display/XNAT16/XNAT+1.6+Installation+Guide<br />
<br />
* XNAT Linked Data Wrapper:<br />
** Connects XNAT to the semantic data infrastructure.<br />
** Is available here: http://surgipedia.sfb125.de/wiki/XNAT_Wrapper<br />
** Contact Marco Nolden for detailed information<br />
<br />
=== Surgipedia - A semantic media wiki ===<br />
<br />
[https://www.semantic-mediawiki.org/wiki/Semantic_MediaWiki Semantic Media Wiki] is an extension to the Media Wiki that can be used as an flexible knowledge management system.<br />
<br />
* How to install semantic media wiki:<br /> A detailed description about how to install a semantic media wiki can be found here: https://www.semantic-mediawiki.org/wiki/Help:Installation<br />
<br />
* Have a look at Surgipedia, our semantic media wiki instance: https://surgipedia.sfb125.de<br />
<br />
=== Linked data crawler ===<br />
<br />
Both the contents of the semantic media wiki and XNAT are aggregated by a linked data web crawler into a central triple store.<br />
<br />
* Linked data crawler:<br />Detailed information about LDSpider, the linked data crawler we are using, can be found here: https://github.com/ldspider/ldspider<br />
<br />
=== Triple Store ===<br />
<br />
A triple store is a data base which is especially designed for handling linked data from the semantic web. There are many triple store implementations available and the choice which you want to use is up to you. Here is a small selection of available triple stores:<br />
<br />
* The one we are using: OpenLink Virtuoso<br />
* Redland<br />
* Apache Jena<br />
<br />
== Cognition-Guided Surgery Workbench ==<br />
<br />
The CGS Workbench is an MITK-based desktop application, which provides both flexibility and extensibility for methods integration and unified interfaces to the proposed infrastructure.<br />
<br />
Core-features of the CGS Workbench are:<br />
* DICOM viewing<br />
* Image processing: Segmentation, measurement, image statistics<br />
* XNAT connection: Browse, up- and download your data from XNAT<br />
* Triple store connection: Query / Insertion of triples<br />
* Semantic data annotation: Create annotation files, upload annotation to XNAT or insert directly into the triple store<br />
<br />
How to get it?<br />
* Source code as well as binary installers can be found here: https://projects.sfb125.de (registration required)<br />
* Or contact Marco Nolden / Jasmin Metzger</div>AndreasFetzerhttp://mitk.org/w/index.php?title=File:2015-12-09-BS-final-keyword.pdf&diff=2881File:2015-12-09-BS-final-keyword.pdf2015-12-09T12:30:50Z<p>AndreasFetzer: </p>
<hr />
<div></div>AndreasFetzerhttp://mitk.org/w/index.php?title=Bug_Squashing_Seminars&diff=2880Bug Squashing Seminars2015-12-09T12:30:17Z<p>AndreasFetzer: /* 2015 seminars */</p>
<hr />
<div>__NOTOC__<br />
<br />
The Division of Medical and Biological Informatics at the German Cancer Research Center holds a bug squashing party once a week. We start this group event with short seminars on a current developments or concepts of general interest to MITK developers.<br />
<br />
This page is to collect the seminar slides for people who could not attend or who want to lookup anything.<br />
<br />
<br />
<pre><nowiki><br />
All slides should be added here as PDF files!<br />
No PowerPoint slides!!<br />
</nowiki></pre><br />
<br />
<br />
== 2015 seminars ==<br />
{|class="wikitable" width=100% style="background-color:#ffffff;" <br />
! Date<br />
! PDF link<br />
! Presenter<br />
|-<br />
| 2015-12-09<br />
| [[Media:2015-12-09-BS-final-keyword.pdf| C++ 11 final]] <br />
| Andreas Fetzer<br />
|-<br />
| 2015-11-04<br />
| [[Media:LazyEvaluation.pdf| Lazy Evaluation]] <br />
| Christoph Kolb<br />
|-<br />
| 2015-10-21<br />
| [[Media:FutureTense.pdf| Programming in the future tense]] <br />
| Michael Brehler<br />
|-<br />
| 2015-10-07<br />
| [[Media:MapAndSet.pdf| C++11 STL Container set & map]] <br />
| Sandy Engelhardt<br />
|-<br />
| 2015-09-30<br />
| [[Media:Observer_Pattern.pdf| MITK Subject/Observer Pattern]] <br />
| Vincent Reuter<br />
|-<br />
| 2015-09-16<br />
| [[Media:MITK_Clone_Macro.pdf| MITK Clone macro]] <br />
| Jan Hering<br />
|-<br />
| 2015-09-02<br />
| [[Media:Namespaces.pdf| Fun with namespaces]] <br />
| Caspar Goch<br />
|-<br />
| 2015-08-22<br />
| [[Media:VariableInitialization.pdf| Some Basics on C++ Variable Initialization]] <br />
| Alfred Franz<br />
|-<br />
| 2015-08-12<br />
| [[Media:MITKTestingSeminar.pdf| MITK Testing with CppUnit]] <br />
| Thomas Kilgus<br />
|-<br />
| 2015-07-15<br />
| [[Media:20150715_BS_Geometry.pdf|...about our beautiful geometries...]] <br />
| Esther Wild<br />
|-<br />
| 2015-07-07<br />
| [[Media:20150707_BS-DisplayGeometry.pdf|Display Geometry and Interaction Legacy Removal]] <br />
| Christoph Kolb, Christian Weber, Esther Wild<br />
|-<br />
| 2015-06-24<br />
| [[Media:20150624_chrono.pdf|std::chrono]] <br />
| Thomas Kirchner<br />
|-<br />
| 2015-06-03<br />
| [[Media:20150602_SOLID_programming.pdf|SOLID programming]] <br />
| Sebastian J. Wirkert<br />
|-<br />
| 2015-05-27<br />
| [[Media:15-05-27-cmdLineAnalysis.pdf|GNU command line tools for code analysis]] <br />
| Joseph Görres<br />
|-<br />
| 2015-05-13<br />
| [[Media:20150513_RAII.pdf|Ressource Acquisition Is Initialization (RAII)]] <br />
| Sebastian J. Wirkert<br />
|-<br />
| 2015-04-08<br />
| [[Media:rangebasedfor.pdf|C++ 11 Range-based for]] <br />
| Stefan Kislinskiy<br />
|-<br />
| 2015-04-01<br />
| [[Media:15-04-01-BS-Enums.pdf|C++ 11 Enums]] <br />
| Jasmin Metzger<br />
|-<br />
| 2015-03-11<br />
| [[Media:Assembly-Level-Debugging.pdf|Assembly-Level Debugging]] <br />
| Alexandro Sánchez Bach<br />
|-<br />
| 2015-03-11<br />
| [[Media:gitblame.pdf|Git Blame]] <br />
| Peter Neher<br />
|-<br />
| 2015-03-04<br />
| [[Media:nullptr.pdf|C++11 Nullptr]] <br />
| Eric heim<br />
|-<br />
| 2015-02-25<br />
| [[Media:C%2B%2B11_in_MITK.pdf| C++11 auto]]<br />
| Jan Hering<br />
|-<br />
| 2015-02-18<br />
| [[Media:MITK-Master-News.pdf| MITK Master News]]<br />
| Sascha Zelzer<br />
|-<br />
| 2015-02-04<br />
| [[Media:MimeTypes.pdf|MIME Types]] <br />
| Caspar Goch<br />
|-<br />
| 2015-01-28<br />
| [[Media:fwddec.pdf|Forward declaration]] <br />
| Nico Riecker<br />
|-<br />
| 2015-01-21<br />
| [[Media:newio.pdf|Introduction to the new IO System]] <br />
| Keno März<br />
|-<br />
| 2015-01-14<br />
| [[Media:UNDOREDO_in_MITK.pdf|Undo/Redo in MITK]] <br />
| Christian Weber<br />
|-<br />
| 2015-01-07<br />
| [[Media:BugSquashingSeminars$Overlays_in_MITK.pdf|Overlays in MITK]] <br />
| Christoph Kolb<br />
|}<br />
<br />
== 2014 seminars ==<br />
{|class="wikitable" width=100% style="background-color:#ffffff;" <br />
! Date<br />
! PDF link<br />
! Presenter <br />
|-<br />
| 2014-12-04<br />
| [[Media:ImageMapper.pdf|ImageVtkMapper2D]] <br />
| Thomas Kilgus<br />
|-<br />
| 2014-11-26<br />
| [[Media:DecoratorPattern.pdf|DecoratorPattern]] <br />
| Tobias Norajitra<br />
|-<br />
| 2014-11-19<br />
| [[Media:DoubleDispatch.pdf|DoubleDispatch]] <br />
| Sandy Engelhardt<br />
|-<br />
| 2014-10-29<br />
| [[Media:BugSquashingSeminars$BS Constant.pdf|Constant]] <br />
| Esther Wild <br />
|-<br />
| 2014-10-22<br />
| [[Media:Streams.pdf|IO-Streams and the new IO System]] <br />
| Keno März<br />
|-<br />
| 2014-10-08 <br />
| [[Media:BugSquashingSeminars$Sorting_Algorithms.pdf|Sorting_Algorithms]] <br />
| Nils Lichtenberg <br />
|-<br />
| 2014-10-01 <br />
| [[Media:BugSquashingSeminars$ViewNavigator.pdf|View Navigator]] <br />
| Caspar Goch <br />
|-<br />
| 2014-09-17 <br />
| [[Media:BugSquashingSeminars$MitkPython.pdf|MITK Python]] <br />
| Eric Heim <br />
|-<br />
| 2014-09-10 <br />
| [[Media:BugSquashingSeminars$2014-09-10-Strategy-Pattern.pdf|Strategy Pattern]] <br />
| Matthias Eisenmann <br />
|-<br />
| 2014-09-03 <br />
| [[Media:BugSquashingSeminars$2014-09-03-Qt-threading-in-MITK.pdf|Qt-threading-in-MITK]] <br />
| Andreas Fetzer <br />
|-<br />
| 2014-09-03 <br />
| [[Media:BugSquashingSeminars$bugsquashing_DesignPatternState.pdf|Design Pattern: State]] <br />
| Jasmin Metzger <br />
|-<br />
| 2014-07-02 <br />
| [[Media:BugSquashingSeminars$2014-07-02-The_mystery_of_typename.pdf|The mystery of Typename]] <br />
| Michael Goetz <br />
|-<br />
| 2014-06-25 <br />
| [[Media:BugSquashingSeminars$ProperUseOfMitkPointSet.pdf|Proper use of mitk::PointSet]] <br />
| Tobias Norajitra <br />
|-<br />
| 2014-06-18 <br />
| [[Media:BugSquashingSeminars$MITK-basictypes.pdf|MITK basic type restructuring]] <br />
| Sebastian Wirkert <br />
|-<br />
| 2014-06-04 <br />
| [[Media:BugSquashingSeminars$MITK-Persistence.pdf|MITK Persistence]] <br />
| Alfred Franz <br />
|-<br />
| 2014-05-28 <br />
| [[Media:BugSquashingSeminars$2014-05-28-bugsquashing-NewGeometryConcept.pdf|New Geometry Concept]] <br />
| Esther Wild <br />
|-<br />
| 2014-05-20 <br />
| [[Media:BugSquashingSeminars$BS-2014-05-20.pdf|Usage of CTK Commandline Functionality in MITK]] <br />
| Christian Weber <br />
|-<br />
| 2014-05-14 <br />
| [[Media:BugSquashingSeminars$2014-05-14-bugsquashing-functorsAndFor_each.pdf|Functors and for_each]] <br />
| Christoph Kolb <br />
|-<br />
| 2014-04-30 <br />
| [[Media:BugSquashingSeminars$14-04-30-bugsquashing-Qt-Size-Policy.pdf|Qt Size Policy]] <br />
| Michael Brehler <br />
|-<br />
| 2014-04-02 <br />
| [[Media:BugSquashingSeminars$2014-04-02-Bugsquashing-STLremove.pdf|STL erase-remove idiom]] <br />
| Joseph Görres <br />
|-<br />
| 2014-03-26 <br />
| [[Media:BugSquashingSeminars$RemeshingPlugin.pdf|Remeshing Plugin]] <br />
| Stefan Kislinskiy <br />
|-<br />
| 2014-03-05 <br />
| [[Media:BugSquashingSeminars$InteractionTestingFramework.pdf|Interaction testing framework]] <br />
| Tobias Schröder <br />
|-<br />
| 2014-02-19 <br />
| [[Media:BugSquashingSeminars$CppUnitFrameworkSeminar.pdf|Cpp Unit Testing Framework in MITK]] <br />
| Thomas Kilgus <br />
|-<br />
| 2014-02-05 <br />
| [[Media:BugSquashingSeminars$cpp-inline-functions-seminar.pdf|C++ inline functions]] <br />
| Tamara Wiebe <br />
|-<br />
| 2014-01-29 <br />
| [[Media:BugSquashingSeminars$Pointers_vs_References.pdf|Pointers vs. References]] <br />
| Moritz Petry <br />
|-<br />
| 2014-01-15 <br />
| ITK Registration Framework <br />
| Arthur Teimourian <br />
|}<br />
<br />
<br />
== 2013 seminars ==<br />
{|class="mw-collapsible mw-collapsed wikitable" width=100% style="background-color:#ffffff;" <br />
! Date<br />
! PDF link<br />
! Presenter<br />
|-<br />
| 2013-12-04 <br />
| [[Media:BugSquashingSeminars$Bugsquashing_OpenCV.pdf|OpenCV basics and some comments on classification]] <br />
| Josiah Blöcher <br />
|-<br />
| 2013-12-27 <br />
| [[Media:BugSquashingSeminars$2013-11-27-bugsquashing-BlueBerrySelectionService.pdf|BlueBerry Selection Service]] <br />
| Daniel Knorr <br />
|-<br />
| 2013-11-20 <br />
| [[Media:BugSquashingSeminars$RSA.pdf|RSA - Asymmetric Cryptography]] <br />
| Lars Woitzik <br />
|-<br />
| 2013-11-13 <br />
| [[Media:BugSquashingSeminars$13-11-13-bugsquashing-contourmodel.pdf|ContourModel & ContourModelSet]] <br />
| Nico Riecker <br />
|-<br />
| 2013-11-06 <br />
| [[Media:BugSquashingSeminars$13-11-06-bugsquashing-StringComparison.pdf|(Case Insensitive) String Comparison in C++]] <br />
| Adrian Winterstein <br />
|-<br />
| 2013-10-16 <br />
| [[Media:BugSquashingSeminars$2013-10-16-Bugssquashing-TimeGeometry.pdf|Time Geometries]] <br />
| Michael Goetz <br />
|-<br />
| 2013-10-02 <br />
| [[Media:BugSquashingSeminars$2013-10-02-bugsquashing-smartpointer.pdf|ITK vs. VTK Smartpointers]] <br />
| Andreas Fetzer <br />
|-<br />
| 2013-09-25 <br />
| [[Media:BugSquashingSeminars$2013-09-24-bugsquashing-openGL.pdf|OpenGL in MITK]] <br />
| Sandy Engelhardt <br />
|-<br />
| 2013-09-11 <br />
| [[Media:BugSquashingSeminars$APIDocumentation.pdf|API Documentation]] <br />
| Alfred Franz <br />
|-<br />
| 2013-09-04 <br />
| [[Media:BugSquashingSeminars$2013-09-04-bugsquashing-static.pdf|The C++ Keyword static]] <br />
| Stefan Kislinskiy <br />
|-<br />
| 2013-08-21 <br />
| [[Media:BugSquashingSeminars$Code_coverage.pdf|Test Coverage]] <br />
| Eric Heim <br />
|-<br />
| 2013-08-07 <br />
| [[Media:BugSquashingSeminars$vtk6-bs.pdf|VTK 6 Introduction]] <br />
| Christoph Kolb <br />
|-<br />
| 2013-07-31 <br />
| [[Media:BugSquashingSeminars$2013-07-31-buildsystem.pdf|Buildsystem and CMake]] <br />
| Caspar Goch <br />
|-<br />
| 2013-07-17 <br />
| [[Media:BugSquashingSeminars$2013-07-17-Doxygen.pdf|MITK and Doxygen]] and [[Media:BugSquashingSeminars$2013-07-17-DoxyReference.pdf|Doxygen Reference]] <br />
| Keno März <br />
|-<br />
| 2013-07-10 <br />
| [[Media:BugSquashingSeminars$2013-07-10-git-rerere.pdf|git rerere]] <br />
| Andreas Fetzer <br />
|-<br />
| 2013-07-03 <br />
| [[Media:BugSquashingSeminars$2013-07-03-Bugsquashing_FloatingPoint.pdf|Problems with Floating Point Operations]] <br />
| Michael Goetz <br />
|-<br />
| 2013-06-26 <br />
| [[Media:BugSquashingSeminars$ITK_Functors.pdf|Functors in ITK]] <br />
| Tobias Norajitra <br />
|-<br />
| 2013-06-12 <br />
| [[Media:BugSquashingSeminars$13-06-12-bugsquashing-ITKImages.pdf|Using ITK images in MITK]] <br />
| Joseph Görres <br />
|-<br />
| 2013-06-05 <br />
| [[Media:BugSquashingSeminars$13-06-05-bugsquashing-opencl.pdf|ITKv4 GPU acceleration: OpenCL]] <br />
| Michael Brehler <br />
|-<br />
| 2013-05-08 <br />
| [[Media:BugSquashingSeminars$bugsquashing_TypeCasting.pdf|Type casting]] <br />
| Jasmin Metzger <br />
|-<br />
| 2013-05-15 <br />
| [[Media:BugSquashingSeminars$2013-05-15-VariadicTemplates.pdf|C++ 11 VariadicTemplates]] <br />
| Markus Fangerau <br />
|-<br />
| 2013-04-24 <br />
| [[Media:BugSquashingSeminars$13-04-24-bugsquashing-TemporaryObjects.pdf|Temporary objects]] <br />
| Diana Wald <br />
|-<br />
| 2013-04-03 <br />
| [[Media:BugSquashingSeminars$ITK4_Overview.pdf|ITK 4 Overview]] <br />
| Sven Mersmann <br />
|-<br />
| 2013-03-13 <br />
| [[Media:BugSquashingSeminars$CTest.pdf| CTest]] <br />
| Thomas Kilgus <br />
|-<br />
| 2013-02-13 <br />
| [[Media:BugSquashingSeminars$PlatformProjectInteraction.pdf| Platform project: Interaction]] <br />
| Christian Weber <br />
|-<br />
| 2013-02-06 <br />
| [[Media:BugSquashingSeminars$Git_reflog.pdf|Git reflog]] <br />
| Sandy Engelhardt <br />
|-<br />
| 2013-01-30 <br />
| [[Media:BugSquashingSeminars$STLAlgorithms_Functors.pdf|STL Algorithms Functors]] <br />
| Jan Hering <br />
|-<br />
| 2013-01-16 <br />
| [[Media:BugSquashingSeminars$GeometryClasses.pdf|Geometry Classes]] <br />
| Bastian Graser <br />
|}<br />
<br />
<br />
== 2012 seminars ==<br />
{|class="mw-collapsible mw-collapsed wikitable" width=100% style="background-color:#ffffff;" <br />
! Date<br />
! PDF link<br />
! Presenter<br />
|-<br />
| 2012-12-12 <br />
| [[Media:BugSquashingSeminars$Constructors.pdf|Constructors]] <br />
| Frederik Drosdzol <br />
|-<br />
| 2012-12-05 <br />
| [[Media:BugSquashingSeminars$QtWebBridge.pdf|Qt Web Bridge]] <br />
| Moritz Petry <br />
|-<br />
| 2012-11-28 <br />
| [[Media:BugSquashingSeminars$Design-Patter-MVVM.pdf| Design Pattern MVVM]] <br />
| Lars Woitzik <br />
|-<br />
| 2012-11-21 <br />
| [[Media:BugSquashingSeminars$QtDPointer.pdf|D Pointer und Qt]] <br />
| Jonas Cordes <br />
|-<br />
| 2012-11-15 <br />
| [[Media:BugSquashingSeminars$GitDetachedHEAD.pdf|Git Detached HEAD]] <br />
| Andreas Fetzer <br />
|-<br />
| 2012-10-30 <br />
| [[Media:BugSquashingSeminars$Pimpl.pdf|PIMPL Idiom]] <br />
| Alexander Seitel <br />
|-<br />
| 2012-10-24 <br />
| [[Media:BugSquashingSeminars$Valgrind.pdf|Valgrind]] <br />
| Eric Heim <br />
|-<br />
| 2012-10-17 <br />
| [[Media:BugSquashingSeminars$bug-squashing_image-accessors.pdf|Image accessors in MITK]] <br />
| Joseph Görres <br />
|-<br />
| 2012-10-03 <br />
| [[Media:BugSquashingSeminars$CustomViewerApplicationExample.pptx|CustomViewer Application Example]] <br />
| Tobias Norajitra <br />
|-<br />
| 2012-09-26 <br />
| [[Media:BugSquashingSeminars$BlueBerryExamples.pdf|BlueBerry Examples]] <br />
| Michael Brehler <br />
|-<br />
| 2012-09-05 <br />
| [[Media:BugSquashingSeminars$ExceptionHandlingInMITK.pdf|Exception handling in MITK]] <br />
| Alfred Franz <br />
|-<br />
| 2012-08-29 <br />
| [[Media:BugSquashingSeminars$LoggingInMITK.pdf|Logging in MITK]] <br />
| Alfred Franz <br />
|-<br />
| 2012-08-22 <br />
| [[Media:BugSquashingSeminars$Microservices1.pdf|Microservices I: Declearing Services]] <br />
| Keno März <br />
|-<br />
| 2012-08-22 <br />
| [[Media:BugSquashingSeminars$Microservices2.pdf|Microservices II: QmitkServiceListWidget]] <br />
| Keno März <br />
|-<br />
| 2012-06-27 <br />
| [[Media:BugSquashingSeminars$BugSquashingSeminar_Applications.pdf|Customizing your own MITK application]] <br />
| Caspar Goch <br />
|-<br />
| 2012-06-06 <br />
| [[Media:BugSquashingSeminars$PointerArithmetic.pdf|Pointer Arithmetic]] <br />
| Diana Wald <br />
|-<br />
| 2012-05-02 <br />
| [[Media:BugSquashingSeminars$ITKBarriers.pdf|Threading with ITK Barriers]] <br />
| Sven Mersmann <br />
|-<br />
| 2012-04-18 <br />
| [[Media:BugSquashingSeminars$avoid_long_functions.pdf|Avoid long functions]] <br />
| Stefan Kislinskiy <br />
|-<br />
| 2012-04-11 <br />
| [[Media:BugSquashingSeminars$tbb.pdf|Intel Threading Building Blocks]] <br />
| Michael Mueller <br />
|-<br />
| 2012-04-04 <br />
| [[Media:BugSquashingSeminars$openmp.pdf|OpenMP]] <br />
| Eric Heim <br />
|-<br />
| 2012-03-08 <br />
| [[Media:BugSquashingSeminars$visual-studio-plugins.pdf|Visual Studio Plugins]] <br />
| Franciszek E. Binczyk <br />
|-<br />
| 2012-03-08 <br />
| [[Media:BugSquashingSeminars$CreateYourOwnMITKDatatype.pdf|Create your own MITK Datatype]] <br />
| Bastian Graser <br />
|-<br />
| 2012-02-22 <br />
| [[Media:BugSquashingSeminars$BSQ_git_bisect_export.pdf|Git Bisect]] <br />
| Jan Hering <br />
|-<br />
| 2012-02-15 <br />
| [[Media:BugSquashingSeminars$Bugsquashing_git_stash.pdf|Git Stash]] <br />
| Andreas Fetzer <br />
|-<br />
| 2012-02-08 <br />
| [[Media:BugSquashingSeminars$gitk.pdf|gitk]] <br />
| Jonas Cordes <br />
|-<br />
| 2012-01-25 <br />
| [[Media:BugSquashingSeminars$GitRebaseInteractive.pdf|Git Rebase Interactive]] <br />
| Tobias Schroeder <br />
|-<br />
| 2012-01-11 <br />
| [[Media:BugSquashingSeminars$UIWidgetsInMITK_external.pdf|UI Widgets in MITK]] <br />
| Alfred Franz <br />
|}<br />
<br />
<br />
== 2011 seminars ==<br />
{|class="mw-collapsible mw-collapsed wikitable" width=100% style="background-color:#ffffff;" <br />
! Date <br />
! PDF link<br />
! Presenter<br />
|-<br />
| 2011-12-14 <br />
| [[Media:BugSquashingSeminars$11-12-14-bugsquashing-mergingbundles.pdf|Merging multiple bundles into one]] <br />
| Caspar Goch <br />
|-<br />
| 2011-11-30 <br />
| [[Media:BugSquashingSeminars$11-11-30-bugsquashing-GitGUI.pdf|Git GUI]] <br />
| Alexander Seitel <br />
|-<br />
| 2011-11-23 <br />
| [[Media:BugSquashingSeminars$BugsqGIT.pdf|Git Workflows: #1 Bug integration]] <br />
| Thomas Kilgus <br />
|-<br />
| 2011-11-16 <br />
| [[Media:BugSquashingSeminars$CPack.pdf|CPack]] <br />
| Peter Neher <br />
|-<br />
| 2011-11-09 <br />
| [[Media:BugSquashingSeminars$Bug-squashing_Evaluation.pdf|Bug Squashing Evaluation]] <br />
| Lena Maier-Hein <br />
|-<br />
| 2011-10-19 <br />
| [[Media:BugSquashingSeminars$Design_Pattern_Observer_Whiteboard.pdf|Design Patterns: Observer Whiteboard]] <br />
| Jasmin Metzger <br />
|-<br />
| 2011-09-28 <br />
| [[Media:BugSquashingSeminars$BuqSquashing-UnusualBugs.pdf|Unusual bugs]] <br />
| Bastian Graser <br />
|-<br />
| 2011-08-24 <br />
| [[Media:BugSquashingSeminars$BugSquashing_ResourceProbe_ITK.pdf|ITK ResourceProbe]] <br />
| Jan Hering <br />
|-<br />
| 2011-08-17 <br />
| [[Media:BugSquashingSeminars$BoostCompressedPair.pdf|Boost Compressed Pair]] <br />
| Raluca Pahontu <br />
|-<br />
| 2011-08-10 <br />
| [[Media:BugSquashingSeminars$bugsquashingseminar_const_20110810.pdf|Const correctness]] <br />
| Clarence Bartenhagen <br />
|-<br />
| 2011-08-03 <br />
| [[Media:BugSquashingSeminars$SignalSlots.pdf|Signals and Slots in Qt]] <br />
| Diana Wald <br />
|-<br />
| 2011-07-13 <br />
| [[Media:BugSquashingSeminars$code-complexity.pdf|Code Complexity]] <br />
| Stefan Kislinskiy <br />
|-<br />
| 2011-07-06 <br />
| [[Media:BugSquashingSeminars$11-07-06-bugsquashing-copying.pdf|Copy constructors and assignment operators]] <br />
| Thomas van Bruggen <br />
|-<br />
| 2011-06-29 <br />
| [[Media:BugSquashingSeminars$goodCPUbasedITKfilter.pdf|HowTo write a good CPU-based ITK-ThreadedGenerateData]] <br />
| Ignaz Reicht <br />
|-<br />
| 2011-06-22 <br />
| [[Media:BugSquashingSeminars$BugSquashingWhatIsTheMoc.pdf|MetaObjectCompiler]] <br />
| Ingmar Gergel <br />
|-<br />
| 2011-06-08 <br />
| [[Media:BugSquashingSeminars$this-pointer.pdf|The this pointer in C++]] <br />
| David Guerrero <br />
|-<br />
| 2011-06-01 <br />
| [[Media:BugSquashingSeminars$BugSquashingInitialization.pdf|Initialization]] <br />
| Caspar Goch <br />
|-<br />
| 2011-05-25 <br />
| [[Media:BugSquashingSeminars$11-05-24-bugsquashing-uml.pdf|UML - Creating an activity diagram]] <br />
| Michael Müller <br />
|-<br />
| 2011-05-18 <br />
| [[Media:BugSquashingSeminars$TemplateSpecialization.pdf|Template Specialization]] <br />
| Klaus Fritzsche <br />
|-<br />
| 2011-05-11 <br />
| [[Media:BugSquashingSeminars$Cpp-Inheritance.pdf|C++ Inheritance]] <br />
| Sascha Zelzer <br />
|-<br />
| 2011-04-06 <br />
| [[Media:BugSquashingSeminars$MITK_Undo.pdf|Undo in MITK]] <br />
| Ingmar Wegner <br />
|-<br />
| 2011-03-30 <br />
| [[Media:BugSquashingSeminars$Command-Pattern.pdf|The Command Pattern]] <br />
| Andreas Fetzer <br />
|-<br />
| 2011-03-23 <br />
| [[Media:BugSquashingSeminars$DigitalNumericalRepresentations.pdf|Digital Numerical Representations]] <br />
| Markus Fangerau <br />
|-<br />
| 2011-03-09 <br />
| [[Media:BugSquashingSeminars$Using_QThread.pdf|QThread in MITK]] <br />
| Peter Neher <br />
|-<br />
| 2011-03-02 <br />
| [[Media:BugSquashingSeminars$FilterInMITK.pdf|Filter in MITK]] <br />
| Thomas Kilgus <br />
|-<br />
| 2011-02-23 <br />
| [[attachment:BuqSquashing - XML.pdf|XML in MITK]] <br />
| Bastian Graser <br />
|-<br />
| 2011-02-16 <br />
| [[attachment:Computer-aided Design.pdf|Computer-aided Design]] <br />
| Johannes Gaa <br />
|-<br />
| 2011-01-19 <br />
| [[Media:BugSquashingSeminars$Boost.pdf|Boost]] <br />
| Alexander Seitel <br />
|-<br />
| 2011-01-12 <br />
| [[Media:BugSquashingSeminars$OpenCV.pdf|OpenCV]] <br />
| Anja Groch <br />
|}<br />
<br />
<br />
== 2010 seminars ==<br />
{|class="mw-collapsible mw-collapsed wikitable" width=100% style="background-color:#ffffff;" <br />
! Date<br />
! PDF link <br />
! Presenter<br />
|-<br />
| 2010-12-22 <br />
| [[Media:BugSquashingSeminars$voidPointer.pdf|Void Pointer]] <br />
| Ignaz Reicht <br />
|-<br />
| 2010-12-15 <br />
| [[Media:BugSquashingSeminars$Defining_MITK_Datatypes.pdf|Defining your own MITK Datatypes]] <br />
| Klaus Fritzsche <br />
|-<br />
| 2010-12-01 <br />
| [[Media:BugSquashingSeminars$BugSquashingOperatorOverloading.pdf|Operator Overloading]] <br />
| Sascha Zelzer <br />
|-<br />
| 2010-11-17 <br />
| [[Media:BugSquashingSeminars$designPatternFactoryMethod.pdf|Desing Pattern Factory Method]] <br />
| De Long Iu <br />
|-<br />
| 2010-11-10 <br />
| [[Media:BugSquashingSeminars$vnl.pdf|The VNL library]] <br />
| Tobias Heimann <br />
|-<br />
| 2010-11-03 <br />
| [[Media:BugSquashingSeminars$itk-events.pdf|ITK Events]] <br />
| Michael Müller <br />
|-<br />
| 2010-10-20 <br />
| [[Media:BugSquashingSeminars$BugSquashingSeminar_MITKRoundtrip.pdf|MITK-Core Roundtrip]] <br />
| Sven Mersmann <br />
|-<br />
| 2010-09-29 <br />
| [[Media:BugSquashingSeminars$MitkChannel.pdf|Mitk-Channel]] <br />
| Kwong Yung <br />
|-<br />
| 2010-09-15 <br />
| [[Media:BugSquashingSeminars$Virtual_Methods.pdf|Virtual Methods]] <br />
| Thomas van Bruggen <br />
|-<br />
| 2010-08-08 <br />
| [[Media:BugSquashingSeminars$BugSquashingSeminar_Internationalisierung.pdf|Internationalization]] <br />
| Markus Engel <br />
|-<br />
| 2010-09-01 <br />
| [[Media:BugSquashingSeminars$Friend_Classes.pdf|Friend Classes]] <br />
| Bastian Graser <br />
|-<br />
| 2010-08-25 <br />
| [[Media:BugSquashingSeminars$BugSquashingSeminar_VTKDebugLeaks.pdf|vtkDebugLeaks $ vtk Memory Management]] <br />
| Diana Wald <br />
|-<br />
| 2010-08-18 <br />
| [[Media:BugSquashingSeminars$Exception_Save_Code.pdf|Exception-safe Code]] <br />
| Paul Mercea <br />
|-<br />
| 2010-08-11 <br />
| [[Media:BugSquashingSeminars$MultipleInheritance.pdf|Multiple Inheritance]] <br />
| Alexander Seitel <br />
|-<br />
| 2010-08-04 <br />
| [[Media:BugSquashingSeminars$Traits.pdf|Traits]] <br />
| Caspar Goch <br />
|-<br />
| 2010-04-28 <br />
| [[Media:BugSquashingSeminars$BugSquashingSeminar_SharedLibraries.pdf|Shared Libraries]] <br />
| Markus Fangerau <br />
|-<br />
| 2010-04-07 <br />
| [[Media:BugSquashingSeminars$BugSquashingSeminar_HDF5-Lib.pdf|HDF5-Lib]] <br />
| Sven Mersmann <br />
|-<br />
| 2010-03-17 <br />
| [[Media:BugSquashingSeminars$design-patterns-introduction.pdf|Design Patterns and the proxy pattern]] <br />
| Michael Müller <br />
|-<br />
| 2010-03-10 <br />
| [[Media:BugSquashingSeminars$QmitkFunctionality.pdf|Things to know about the QmitkFunctionality class]] <br />
| Michael Müller <br />
|-<br />
| 2010-03-03 <br />
| [[Media:BugSquashingSeminars$BugSquashingSeminar_Doxygen.pdf|Doxygen]] <br />
| Caspar Goch <br />
|-<br />
| 2010-02-24 <br />
| [[Media:BugSquashingSeminars$MITK_StyleGuide.pdf|MITK Style Guide]] <br />
| Diana Wald <br />
|-<br />
| 2010-02-03 <br />
| [[Media:BugSquashingSeminars$exceptions-in-cpp.pdf|Exceptions in C++]] <br />
| Michael Müller <br />
|-<br />
| 2010-01-11 <br />
| [[Media:BugSquashingSeminars$iostreams.pdf|C++ STL I$O-Streams]] <br />
| Daniel Maleike <br />
|-<br />
| 2010-01-11 <br />
| [[Media:BugSquashingSeminars$MITK_InstallersPDF.pdf|MITK Application Deployment]] <br />
| Matthias Baumhauer <br />
|}<br />
<br />
<br />
== 2009 seminars ==<br />
{|class="mw-collapsible mw-collapsed wikitable" width=100% style="background-color:#ffffff;" <br />
! Date<br />
! PDF link <br />
! Presenter <br />
|-<br />
| unscheduled <br />
| IGT-Showcase <br />
| Jochen Neuhaus <br />
|-<br />
| 2009-11-04 <br />
| [[Media:BugSquashingSeminars$MITK_Coordinate_Systems.pdf|MITK Coordinate Systems]] <br />
| Tobias Schwarz <br />
|-<br />
| 2009-10-21 <br />
| [[Article: Using Perspectives in the Workbench]] <br />
| Sascha Zelzer <br />
|-<br />
| 2009-10-07 <br />
| [[Article:_Save_and_Restore_your_View_State]] <br />
| Sascha Zelzer <br />
|-<br />
| 2009-09-30 <br />
| [[Media:BugSquashingSeminars$SelectionService.pdf|The BlueBerry Selection Service]] <br />
| Klaus Fritzsche <br />
|-<br />
| 2009-07-08 <br />
| How rendering is done in MITK and how it should be done <br />
| Mathias Seitel, Markus Fangerau <br />
|-<br />
| 2009-07-01 <br />
| [[Media:BugSquashingSeminars$Pipelining.pdf|The MITK$ITK Pipeline]] <br />
| Phillip Hartmann <br />
|-<br />
| 2009-06-24 <br />
| What are modules in the new build system <br />
| Marco Nolden <br />
|-<br />
| 2009-06-17 <br />
| [[Media:BugSquashingSeminars$play_button.pdf|How source code becomes executable (the "play" button)]] <br />
| Daniel Maleike <br />
|-<br />
| 2009-06-03 <br />
| [[Media:BugSquashingSeminars$logging.pdf|New logging macros for MITK]] <br />
| Markus Fangerau <br />
|-<br />
| 2009-05-27 <br />
| [[Media:BugSquashingSeminars$eclipse_ui_guidelines.pdf|Eclipse UI Guidelines]] <br />
| Michael Müller <br />
|-<br />
| 2009-05-20 <br />
| [[Media:BugSquashingSeminars$how_to_use_the_datastorage.pdf|DataStorage finally replaces DataTree]] <br />
| Jochen Neuhaus <br />
|-<br />
| 2009-05-13 <br />
| [[Media:BugSquashingSeminars$schwarzwald_dashboards.pdf|Post-Schwarzwald dashboards and Dart clients]] <br />
| Tobias Schwarz <br />
|-<br />
| 2009-05-07 <br />
| [[Media:BugSquashingSeminars$PreferencesService.pdf|The Preferences Service]] <br />
| Michael Müller</div>AndreasFetzerhttp://mitk.org/w/index.php?title=MITK_Release_Cycle&diff=2853MITK Release Cycle2015-09-17T09:53:43Z<p>AndreasFetzer: </p>
<hr />
<div>__NOTOC__<br />
The MITK toolkit is released in snapshots every 3-4 months. The focus of the snapshots is the toolkit. They contain the source code and binary packages of an application for image viewing, measurement and segmentation.<br />
<br />
Apart from the snapshots several projects release specific application versions and configurations like [[DiffusionImaging|Diffusion Imaging]].<br />
<br />
<br />
== Release schedule ==<br />
{|class="wikitable" width=100% style="style="background-color:#ffffff;"<br />
! Name<br />
! Status<br />
! Release date<br />
! Feature freeze<br />
! Comments<br />
|-<br />
|style="background-color:#ffff66;" | [[MITK_ReleaseNotes_2015.12 | MITK 2015.12]] <br />
|style="background-color:#ffff66" |Scheduled<br />
|style="background-color:#ffff66" |''16.12.2015'' <br />
|style="background-color:#ffff66" |''25.11.2015'' <br />
|style="background-color:#ffff66" | <br />
|-<br />
|style="background-color:#8FFF6F;" | [[MITK_ReleaseNotes_2015.05.2 | MITK 2015.05.2]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''17.09.2015'' <br />
|style="background-color:#8FFF6F" |''-'' <br />
|style="background-color:#8FFF6F" | Bugfix Release for [[MITK_ReleaseNotes_2015.05 | MITK 2015.05]]<br />
|-<br />
|style="background-color:#8FFF6F" | [[MITK_ReleaseNotes_2015.05 | MITK 2015.05]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''18.06.2015'' <br />
|style="background-color:#8FFF6F" |''04.03.2015'' <br />
|style="background-color:#8FFF6F" | CMake minimum version 3.2.1, Qt 5 support<br />
|-<br />
|style="background-color:#8FFF6F" | [[MITK_ReleaseNotes_2014.10 | MITK 2014.10]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''27.11.2014'' <br />
|style="background-color:#8FFF6F" |''12.09.2014'' <br />
|style="background-color:#8FFF6F" | New Plugins for e.g. Remeshing, Movie/Screenshotmaker, ...<br />
|-<br />
|style="background-color:#8FFF6F" | [[MITK-ReleaseNotes-2014-03 | MITK 2014.03]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''15.04.2014'' <br />
|style="background-color:#8FFF6F" |''12.03.2014'' <br />
|style="background-color:#8FFF6F" | Includes VTK 6 compatibility <br />
|-<br />
|style="background-color:#8FFF6F" | [[MITK-ReleaseNotes-2013-12| MITK 2013.12]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''09.12.2013'' <br />
|style="background-color:#8FFF6F" |''12.11.2013'' <br />
|style="background-color:#8FFF6F" |Geometry redesign, mitk::ScalarType moved from float to double <br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2013-09 | MITK 2013.09]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''07.10.2013'' <br />
|style="background-color:#8FFF6F" |''10.09.2013'' <br />
|style="background-color:#8FFF6F" | <br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2013-06 | MITK 2013.06]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''28.06.2013'' <br />
|style="background-color:#8FFF6F" |''12.06.2013'' <br />
|style="background-color:#8FFF6F" | Moved to ITK4<br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2013-03 | MITK 2013.03]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''31.03.2013'' <br />
|style="background-color:#8FFF6F" |''13.03.2013'' <br />
|style="background-color:#8FFF6F" | Redesigned interaction framwork<br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2012-12 | MITK 2012.12]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''20.12.2012'' <br />
|style="background-color:#8FFF6F" |''28.11.2012'' <br />
|style="background-color:#8FFF6F" | Image-access via dedicated ImageAccessors<br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2012-09 | MITK 2012.09]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''25.09.2012'' <br />
|style="background-color:#8FFF6F" |''04.09.2012'' <br />
|style="background-color:#8FFF6F" | Includes '''experimental''' DICOM Query/Retrieve <br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2012-06 | MITK 2012.06]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |15.06.2012 <br />
|style="background-color:#8FFF6F" |30.05.2012 <br />
|style="background-color:#8FFF6F" | <br />
|-<br />
|style="background-color:#8FFF6F" |MITK 2012.02 <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |07.02.2012 <br />
|style="background-color:#8FFF6F" |01.02.2012 <br />
|style="background-color:#8FFF6F" |Test release, no binary packages, only [http://mitk.org/git/?p=MITK.git;a=shortlog;h=refs/heads/releases/2012-02 source] <br />
|}<br />
<br />
== Version scheme ==<br />
Toolkit versions of MITK consist of three components, defined in CMake/mitkSetupVariables.cmake and accessible through <code><nowiki>MITKConfig.cmake</nowiki></code> and <code><nowiki>mitkConfig.h</nowiki></code><br />
<br />
* '''MITK_VERSION_MAJOR''': Year of the release<br />
* '''MITK_VERSION_MINOR''': Month of the release (two digits)<br />
* '''MITK_VERSION_PATCH''': Numbering of releases in this month:<br />
** <code><nowiki>.0</nowiki></code> is the first one,<br />
** <code><nowiki>.2</nowiki></code> the second one (based on <code><nowiki>.0</nowiki></code>, not HEAD)<br />
** odd numbers specifying development versions<br />
<br />
<code><nowiki>2012.02.0</nowiki></code> is the first snapshot release in February 2012. Bugfix releases for this will be called <code><nowiki>2012.02.2</nowiki></code>, <code><nowiki>2012.02.4</nowiki></code> ... .<br />
<br />
<br />
=== Why is there no MITK 1.0? ===<br />
MITK as a toolkit is mature and usable for some time now. Somehow we "missed" releasing a specific version as 1.0 . Since 1.0 mostly has a political and cultural meaning (see [http://en.wikipedia.org/wiki/Versioning#Version_1.0_as_a_milestone Wikipedia] on this) we decided to skip 1.0 and move to a date-based versioning scheme for the toolkit.<br />
<br />
Still there will be 1.0 releases of applications based on MITK.<br />
<br />
<br />
=== Old versions ===<br />
The old versioning scheme created some confusion, so we will give a short overview on the existing versions so far:<br />
{| border="1" width=100% cellpadding="2" cellspacing="0"<br />
| 0.10, 0.12, 0.12.2, 0.14 <br />
| Official releases <br />
|-<br />
| 0.99.x <br />
| Snapshot releases that were intended as previews of MITK 1.0 . These are completely outdated, see above <br />
|-<br />
| 0.15.1 <br />
| This is the current master/trunk/HEAD release, following our old versioning scheme. As soon as we have completely moved to the new scheme this number will not appear anywhere anymore. <br />
|}<br />
<br />
<br />
=== Other versions ===<br />
Tags named "releases/snapshot-YYYYMMDD" are usually created for projects using MITK which need to permanently mark a specific version of MITK. Please be aware that these releases are not always fully tested since most projects only use parts of MITK.<br />
<br />
<br />
== Version control ==<br />
New versions will be put in branches named releases/2012-02 during development and tagged after the release. More detailed information will be put here and on the download page.</div>AndreasFetzerhttp://mitk.org/w/index.php?title=MITK_Release_Cycle&diff=2852MITK Release Cycle2015-09-17T08:59:24Z<p>AndreasFetzer: </p>
<hr />
<div>__NOTOC__<br />
The MITK toolkit is released in snapshots every 3-4 months. The focus of the snapshots is the toolkit. They contain the source code and binary packages of an application for image viewing, measurement and segmentation.<br />
<br />
Apart from the snapshots several projects release specific application versions and configurations like [[DiffusionImaging|Diffusion Imaging]].<br />
<br />
<br />
== Release schedule ==<br />
{|class="wikitable" width=100% style="style="background-color:#ffffff;"<br />
! Name<br />
! Status<br />
! Release date<br />
! Feature freeze<br />
! Comments<br />
|-<br />
|style="background-color:#ffff66;" | [[MITK_ReleaseNotes_2015.12 | MITK 2015.12]] <br />
|style="background-color:#ffff66" |Scheduled<br />
|style="background-color:#ffff66" |''25.11.2015'' <br />
|style="background-color:#ffff66" |''16.12.2015'' <br />
|style="background-color:#ffff66" | <br />
|-<br />
|style="background-color:#8FFF6F;" | [[MITK_ReleaseNotes_2015.05.2 | MITK 2015.05.2]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''17.09.2015'' <br />
|style="background-color:#8FFF6F" |''-'' <br />
|style="background-color:#8FFF6F" | Bugfix Release for [[MITK_ReleaseNotes_2015.05 | MITK 2015.05]]<br />
|-<br />
|style="background-color:#8FFF6F" | [[MITK_ReleaseNotes_2015.05 | MITK 2015.05]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''18.06.2015'' <br />
|style="background-color:#8FFF6F" |''04.03.2015'' <br />
|style="background-color:#8FFF6F" | CMake minimum version 3.2.1, Qt 5 support<br />
|-<br />
|style="background-color:#8FFF6F" | [[MITK_ReleaseNotes_2014.10 | MITK 2014.10]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''27.11.2014'' <br />
|style="background-color:#8FFF6F" |''12.09.2014'' <br />
|style="background-color:#8FFF6F" | New Plugins for e.g. Remeshing, Movie/Screenshotmaker, ...<br />
|-<br />
|style="background-color:#8FFF6F" | [[MITK-ReleaseNotes-2014-03 | MITK 2014.03]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''15.04.2014'' <br />
|style="background-color:#8FFF6F" |''12.03.2014'' <br />
|style="background-color:#8FFF6F" | Includes VTK 6 compatibility <br />
|-<br />
|style="background-color:#8FFF6F" | [[MITK-ReleaseNotes-2013-12| MITK 2013.12]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''09.12.2013'' <br />
|style="background-color:#8FFF6F" |''12.11.2013'' <br />
|style="background-color:#8FFF6F" |Geometry redesign, mitk::ScalarType moved from float to double <br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2013-09 | MITK 2013.09]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''07.10.2013'' <br />
|style="background-color:#8FFF6F" |''10.09.2013'' <br />
|style="background-color:#8FFF6F" | <br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2013-06 | MITK 2013.06]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''28.06.2013'' <br />
|style="background-color:#8FFF6F" |''12.06.2013'' <br />
|style="background-color:#8FFF6F" | Moved to ITK4<br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2013-03 | MITK 2013.03]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''31.03.2013'' <br />
|style="background-color:#8FFF6F" |''13.03.2013'' <br />
|style="background-color:#8FFF6F" | Redesigned interaction framwork<br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2012-12 | MITK 2012.12]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''20.12.2012'' <br />
|style="background-color:#8FFF6F" |''28.11.2012'' <br />
|style="background-color:#8FFF6F" | Image-access via dedicated ImageAccessors<br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2012-09 | MITK 2012.09]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''25.09.2012'' <br />
|style="background-color:#8FFF6F" |''04.09.2012'' <br />
|style="background-color:#8FFF6F" | Includes '''experimental''' DICOM Query/Retrieve <br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2012-06 | MITK 2012.06]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |15.06.2012 <br />
|style="background-color:#8FFF6F" |30.05.2012 <br />
|style="background-color:#8FFF6F" | <br />
|-<br />
|style="background-color:#8FFF6F" |MITK 2012.02 <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |07.02.2012 <br />
|style="background-color:#8FFF6F" |01.02.2012 <br />
|style="background-color:#8FFF6F" |Test release, no binary packages, only [http://mitk.org/git/?p=MITK.git;a=shortlog;h=refs/heads/releases/2012-02 source] <br />
|}<br />
<br />
== Version scheme ==<br />
Toolkit versions of MITK consist of three components, defined in CMake/mitkSetupVariables.cmake and accessible through <code><nowiki>MITKConfig.cmake</nowiki></code> and <code><nowiki>mitkConfig.h</nowiki></code><br />
<br />
* '''MITK_VERSION_MAJOR''': Year of the release<br />
* '''MITK_VERSION_MINOR''': Month of the release (two digits)<br />
* '''MITK_VERSION_PATCH''': Numbering of releases in this month:<br />
** <code><nowiki>.0</nowiki></code> is the first one,<br />
** <code><nowiki>.2</nowiki></code> the second one (based on <code><nowiki>.0</nowiki></code>, not HEAD)<br />
** odd numbers specifying development versions<br />
<br />
<code><nowiki>2012.02.0</nowiki></code> is the first snapshot release in February 2012. Bugfix releases for this will be called <code><nowiki>2012.02.2</nowiki></code>, <code><nowiki>2012.02.4</nowiki></code> ... .<br />
<br />
<br />
=== Why is there no MITK 1.0? ===<br />
MITK as a toolkit is mature and usable for some time now. Somehow we "missed" releasing a specific version as 1.0 . Since 1.0 mostly has a political and cultural meaning (see [http://en.wikipedia.org/wiki/Versioning#Version_1.0_as_a_milestone Wikipedia] on this) we decided to skip 1.0 and move to a date-based versioning scheme for the toolkit.<br />
<br />
Still there will be 1.0 releases of applications based on MITK.<br />
<br />
<br />
=== Old versions ===<br />
The old versioning scheme created some confusion, so we will give a short overview on the existing versions so far:<br />
{| border="1" width=100% cellpadding="2" cellspacing="0"<br />
| 0.10, 0.12, 0.12.2, 0.14 <br />
| Official releases <br />
|-<br />
| 0.99.x <br />
| Snapshot releases that were intended as previews of MITK 1.0 . These are completely outdated, see above <br />
|-<br />
| 0.15.1 <br />
| This is the current master/trunk/HEAD release, following our old versioning scheme. As soon as we have completely moved to the new scheme this number will not appear anywhere anymore. <br />
|}<br />
<br />
<br />
=== Other versions ===<br />
Tags named "releases/snapshot-YYYYMMDD" are usually created for projects using MITK which need to permanently mark a specific version of MITK. Please be aware that these releases are not always fully tested since most projects only use parts of MITK.<br />
<br />
<br />
== Version control ==<br />
New versions will be put in branches named releases/2012-02 during development and tagged after the release. More detailed information will be put here and on the download page.</div>AndreasFetzerhttp://mitk.org/w/index.php?title=MITK_Release_Cycle&diff=2851MITK Release Cycle2015-09-17T08:41:35Z<p>AndreasFetzer: </p>
<hr />
<div>__NOTOC__<br />
The MITK toolkit is released in snapshots every 3-4 months. The focus of the snapshots is the toolkit. They contain the source code and binary packages of an application for image viewing, measurement and segmentation.<br />
<br />
Apart from the snapshots several projects release specific application versions and configurations like [[DiffusionImaging|Diffusion Imaging]].<br />
<br />
<br />
== Release schedule ==<br />
{|class="wikitable" width=100% style="style="background-color:#ffffff;"<br />
! Name<br />
! Status<br />
! Release date<br />
! Feature freeze<br />
! Comments<br />
|-<br />
|style="background-color:#ffff66;" | [[MITK_ReleaseNotes_2015.10 | MITK 2015.10]] <br />
|style="background-color:#ffff66" |Scheduled<br />
|style="background-color:#ffff66" |''30.09.2015'' <br />
|style="background-color:#ffff66" |''14.09.2015'' <br />
|style="background-color:#ffff66" | <br />
|-<br />
|style="background-color:#8FFF6F;" | [[MITK_ReleaseNotes_2015.05.2 | MITK 2015.05.2]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''17.09.2015'' <br />
|style="background-color:#8FFF6F" |''-'' <br />
|style="background-color:#8FFF6F" | Bugfix Release for [[MITK_ReleaseNotes_2015.05 | MITK 2015.05]]<br />
|-<br />
|style="background-color:#8FFF6F" | [[MITK_ReleaseNotes_2015.05 | MITK 2015.05]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''18.06.2015'' <br />
|style="background-color:#8FFF6F" |''04.03.2015'' <br />
|style="background-color:#8FFF6F" | CMake minimum version 3.2.1, Qt 5 support<br />
|-<br />
|style="background-color:#8FFF6F" | [[MITK_ReleaseNotes_2014.10 | MITK 2014.10]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''27.11.2014'' <br />
|style="background-color:#8FFF6F" |''12.09.2014'' <br />
|style="background-color:#8FFF6F" | New Plugins for e.g. Remeshing, Movie/Screenshotmaker, ...<br />
|-<br />
|style="background-color:#8FFF6F" | [[MITK-ReleaseNotes-2014-03 | MITK 2014.03]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''15.04.2014'' <br />
|style="background-color:#8FFF6F" |''12.03.2014'' <br />
|style="background-color:#8FFF6F" | Includes VTK 6 compatibility <br />
|-<br />
|style="background-color:#8FFF6F" | [[MITK-ReleaseNotes-2013-12| MITK 2013.12]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''09.12.2013'' <br />
|style="background-color:#8FFF6F" |''12.11.2013'' <br />
|style="background-color:#8FFF6F" |Geometry redesign, mitk::ScalarType moved from float to double <br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2013-09 | MITK 2013.09]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''07.10.2013'' <br />
|style="background-color:#8FFF6F" |''10.09.2013'' <br />
|style="background-color:#8FFF6F" | <br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2013-06 | MITK 2013.06]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''28.06.2013'' <br />
|style="background-color:#8FFF6F" |''12.06.2013'' <br />
|style="background-color:#8FFF6F" | Moved to ITK4<br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2013-03 | MITK 2013.03]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''31.03.2013'' <br />
|style="background-color:#8FFF6F" |''13.03.2013'' <br />
|style="background-color:#8FFF6F" | Redesigned interaction framwork<br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2012-12 | MITK 2012.12]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''20.12.2012'' <br />
|style="background-color:#8FFF6F" |''28.11.2012'' <br />
|style="background-color:#8FFF6F" | Image-access via dedicated ImageAccessors<br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2012-09 | MITK 2012.09]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''25.09.2012'' <br />
|style="background-color:#8FFF6F" |''04.09.2012'' <br />
|style="background-color:#8FFF6F" | Includes '''experimental''' DICOM Query/Retrieve <br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2012-06 | MITK 2012.06]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |15.06.2012 <br />
|style="background-color:#8FFF6F" |30.05.2012 <br />
|style="background-color:#8FFF6F" | <br />
|-<br />
|style="background-color:#8FFF6F" |MITK 2012.02 <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |07.02.2012 <br />
|style="background-color:#8FFF6F" |01.02.2012 <br />
|style="background-color:#8FFF6F" |Test release, no binary packages, only [http://mitk.org/git/?p=MITK.git;a=shortlog;h=refs/heads/releases/2012-02 source] <br />
|}<br />
<br />
== Version scheme ==<br />
Toolkit versions of MITK consist of three components, defined in CMake/mitkSetupVariables.cmake and accessible through <code><nowiki>MITKConfig.cmake</nowiki></code> and <code><nowiki>mitkConfig.h</nowiki></code><br />
<br />
* '''MITK_VERSION_MAJOR''': Year of the release<br />
* '''MITK_VERSION_MINOR''': Month of the release (two digits)<br />
* '''MITK_VERSION_PATCH''': Numbering of releases in this month:<br />
** <code><nowiki>.0</nowiki></code> is the first one,<br />
** <code><nowiki>.2</nowiki></code> the second one (based on <code><nowiki>.0</nowiki></code>, not HEAD)<br />
** odd numbers specifying development versions<br />
<br />
<code><nowiki>2012.02.0</nowiki></code> is the first snapshot release in February 2012. Bugfix releases for this will be called <code><nowiki>2012.02.2</nowiki></code>, <code><nowiki>2012.02.4</nowiki></code> ... .<br />
<br />
<br />
=== Why is there no MITK 1.0? ===<br />
MITK as a toolkit is mature and usable for some time now. Somehow we "missed" releasing a specific version as 1.0 . Since 1.0 mostly has a political and cultural meaning (see [http://en.wikipedia.org/wiki/Versioning#Version_1.0_as_a_milestone Wikipedia] on this) we decided to skip 1.0 and move to a date-based versioning scheme for the toolkit.<br />
<br />
Still there will be 1.0 releases of applications based on MITK.<br />
<br />
<br />
=== Old versions ===<br />
The old versioning scheme created some confusion, so we will give a short overview on the existing versions so far:<br />
{| border="1" width=100% cellpadding="2" cellspacing="0"<br />
| 0.10, 0.12, 0.12.2, 0.14 <br />
| Official releases <br />
|-<br />
| 0.99.x <br />
| Snapshot releases that were intended as previews of MITK 1.0 . These are completely outdated, see above <br />
|-<br />
| 0.15.1 <br />
| This is the current master/trunk/HEAD release, following our old versioning scheme. As soon as we have completely moved to the new scheme this number will not appear anywhere anymore. <br />
|}<br />
<br />
<br />
=== Other versions ===<br />
Tags named "releases/snapshot-YYYYMMDD" are usually created for projects using MITK which need to permanently mark a specific version of MITK. Please be aware that these releases are not always fully tested since most projects only use parts of MITK.<br />
<br />
<br />
== Version control ==<br />
New versions will be put in branches named releases/2012-02 during development and tagged after the release. More detailed information will be put here and on the download page.</div>AndreasFetzerhttp://mitk.org/w/index.php?title=Downloads&diff=2850Downloads2015-09-17T08:21:40Z<p>AndreasFetzer: /* MITK Workbench */</p>
<hr />
<div>__TOC__<br />
<br />
<br />
== MITK applications ==<br />
<br />
<br />
=== MITK Workbench ===<br />
<br />
MITK releases include binary installers for Linux, Mac OS, and Windows. Please note that these installers only contain an application demonstrating MITK's capabilities, not the MITK SDK.<br />
<br />
'''For Linux users:''' The environment variable QT_PLUGIN_PATH has to be set to point to the Qt 5 plugins directory in order to run the application since MITK 2015.05. One of the typical paths is listed within the example commando<br />
:<pre> bash:~/$ export QT_PLUGIN_PATH=/usr/lib/x86_64-linux-gnu/qt5/plugins </pre><br />
<br />
When not set, the attempt to run the application terminates with following error message: ''This application failed to start because it could not find or load the Qt platform plugin "xcb".''<br />
<br />
{|class="wikitable" width=100% style="background-color:#ffffff;"<br />
| '''MITK Release'''<br />
| '''Sources'''<br />
| '''Installers'''<br />
| '''Documentation'''<br />
| '''Supported Platforms'''<br />
|-<br />
| [[MITK_ReleaseNotes_2015.05.2|2015.05.2]] <br />
| [http://www.mitk.org/download/releases/MITK-2015.05.2/MITK-2015.05.2-src.tar.gz Archive]<br />[http://www.mitk.org/download/releases/MITK-2015.05.2/MITK-2015.05.2-src-win.zip Archive (Windows/CRLF)]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2015.05.2 v2015.05.2]<br />
| [http://www.mitk.org/download/releases/MITK-2015.05.2/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2015.05.2/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2015.05.2/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2015.05/ Doxygen]<br />[http://docs.mitk.org/2015.05/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2015.05/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK_ReleaseNotes_2015.05|2015.05.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2015.05/MITK-2015.05.0-src.tar.gz Archive]<br />[http://www.mitk.org/download/releases/MITK-2015.05/MITK-2015.05.0-src-win.zip Archive (Windows/CRLF)]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2015.05.0 v2015.05.0]<br />
| [http://www.mitk.org/download/releases/MITK-2015.05/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2015.05/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2015.05/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2015.05/ Doxygen]<br />[http://docs.mitk.org/2015.05/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2015.05/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK_ReleaseNotes_2014.10|2014.10.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2014.10/MITK-2014.10.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2014.10.0 v2014.10.0]<br />
| [http://www.mitk.org/download/releases/MITK-2014.10/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2014.10/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2014.10/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2014.10/ Doxygen]<br />[http://docs.mitk.org/2014.10/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2014.10/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2014-03|2014.03.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2014.03/MITK-2014.03.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2014.03.0 v2014.03.0] <br />
| [http://www.mitk.org/download/releases/MITK-2014.03/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2014.03/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2014.03/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2014.03/ Doxygen]<br />[http://docs.mitk.org/2014.03/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2014.03/SupportedPlatformsPage.html Supported Platforms] <br />
|}<br />
<br />
<br />
==== Previous releases ====<br />
<br />
{|class="mw-collapsible mw-collapsed wikitable" width=100% style="background-color:#ffffff;"<br />
| '''MITK Release'''<br />
| '''Sources'''<br />
| '''Installers'''<br />
| '''Documentation'''<br />
| '''Supported Platforms'''<br />
|-<br />
| [[MITK-ReleaseNotes-2013-12|2013.12.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.12/MITK-2013.12.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.12.0 v2013.12.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.12/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.12/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.12/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.12/ Doxygen]<br />[http://docs.mitk.org/2013.12/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.12/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-09|2013.09.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.09/MITK-2013.09.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.09.0 v2013.09.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.09/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.09/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.09/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.09/ Doxygen]<br />[http://docs.mitk.org/2013.09/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.09/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-06|2013.06.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.06/MITK-2013.06.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.06.0 v2013.06.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.06/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.06/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.06/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.06/ Doxygen]<br />[http://docs.mitk.org/2013.06/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.06/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-03-2|2013.03.2]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.03/MITK-2013.03.2-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.03.2 v2013.03.2] <br />
| not available <br />
| [http://docs.mitk.org/2013.03.2/ Doxygen]<br />[http://docs.mitk.org/2013.03.2/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.03.2/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-03|2013.03.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.03/MITK-2013.03.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.03.0 v2013.03.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.03/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.03/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.03/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.03/ Doxygen]<br />[http://docs.mitk.org/2013.03/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.03/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2012-12|2012.12.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2012.12/MITK-2012.12.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2012.12.0 v2012.12.0] <br />
| [http://www.mitk.org/download/releases/MITK-2012.12/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2012.12/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2012.12/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2012.12/ Doxygen]<br />[http://docs.mitk.org/2012.12/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2012.12/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2012-09|2012.09.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2012.09/MITK-2012.09.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2012.09.0 v2012.09.0] <br />
| [http://www.mitk.org/download/releases/MITK-2012.09/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2012.09/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2012.09/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2012.09/ Doxygen]<br />[http://docs.mitk.org/2012.09/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2012.09/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2012-06|2012.06.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2012.06/MITK-2012.06.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2012.06.0 v2012.06.0] <br />
| [http://www.mitk.org/download/releases/MITK-2012.06/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2012.06/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2012.06/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2012.06/ Doxygen]<br />[http://docs.mitk.org/2012.06/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2012.06/SupportedPlatformsPage.html Supported Platforms] <br />
|}<br />
<br />
<br />
Some older releases can be found at the [http://sourceforge.net/projects/mitk/ MITK SourceForge project site.]<br />
<br />
Nightly built installers can be found [http://www.mitk.org/download/nightly-builds here]. Caution! These are automatically generated ''untested developer versions''!<br />
<br />
=== MITK Diffusion ===<br />
<br />
MITK Diffusion is an application designed around the workflows for the analysis of diffusion MRI data. As such it is a binary release which expands the functionality available in the MITK Workbench.<br />
<br />
The current release '''2014.10.02''' is available here.<br />
<br />
{| class="wikitable" width=100% style="background-color:#ffffff;"<br />
! Windows <br />
| Vista, Windows 7 <br />
| [http://www.mitk.org/download/releases/MITK-Diffusion-2014.10/Windows/MITK-Diffusion-2014.10.02-win64.exe MS Windows (64 bit) installer] <br />
|-<br />
! Linux <br />
| Ubuntu 14.04 and newer <br />
| [http://www.mitk.org/download/releases/MITK-Diffusion-2014.10/Linux/MITK-Diffusion-2014.10.02-linux64.tar.gz Ubuntu (64 bit), tar.gz archive] <br />
|-<br />
! Mac OS X <br />
| OS X 10.8 and newer <br />
| [http://www.mitk.org/download/releases/MITK-Diffusion-2014.10/MacOS/MITK-Diffusion-2014.10.02-mac64.dmg 10.8 OS X disk image] <br />
|}<br />
<br />
For older releases or more information regarding MITK Diffusion visit our [[DiffusionImaging|MITK Diffusion site]].<br />
<br />
<br />
=== MITK 3M3 ===<br />
<br />
There is also a binary installer for the [http://www.mint-medical.de/productssolutions/mitk3m3/mitk3m3/ '''MITK 3M3'''] image analysis application which is based on MITK.<br />
<br />
<br />
=== Special Releases ===<br />
Recent releases of special applications can be found [http://www.mitk.org/download/releases/ here]. <br />
<br />
<br />
== MITK Source Code ==<br />
We recommend to use the source code archive from the latest MITK release (see table above) or to check out the corresponding git tag.<br />
<br />
If you need bug fixes or features which are not yet included in a MITK release, you can also clone the Git repository at:<br />
<br />
<pre>http://git.mitk.org/MITK.git</pre><br />
<br />
<br />
Before updating to a current development version, you can check the status of the [http://cdash.mitk.org/index.php?project=MITK MITK continuous integration system].<br />
<br />
For details about Git, see also [[MitkGit| Mitk & Git]].<br />
<br />
<br />
== Getting Started ==<br />
<br />
Build instructions are available in the [http://docs.mitk.org/nightly/BuildInstructionsPage.html MITK documentation]. Build requirements are listed [http://www.mitk.org/wiki/Build_requirements here]. See the [[Documentation]] page for further links.<br />
<br />
<br />
== Plugin Generator ==<br />
<br />
The MITK Plugin Generator is a command line tool which can generate CTK-style MITK plug-ins and optionally a whole CMake project to boostrap the process of setting up a MITK-based project.<br />
<br />
For more information, please see the [http://docs.mitk.org/nightly/HowToNewProject.html Documentation].<br />
<br />
The latest version of the MITK Plugin Generator is included in the MITK code repository<br />
<br />
'''Previous releases:'''<br />
<br />
{|class="mw-collapsible mw-collapsed wikitable" width=100% style="background-color:#ffffff;"<br />
| '''Version''' <br />
| '''Release date''' <br />
| '''Dependencies''' <br />
| '''Download''' <br />
| '''Notes''' <br />
| '''MITK Release''' <br />
|-<br />
| style="text-align:center;" colspan="6" | Linux Binaries<br />
|-<br />
| 1.4.0 <br />
| 24-Feb-2012 <br />
| Qt 4.6.2 <br />
| [[Media:Download$MITKPluginGenerator-1.4.0-Linux.tar.gz|MITKPluginGenerator-1.4.0-Linux.tar.gz]] <br />
| Build on Ubuntu 11.04 x64 <br />
| For 2012.06 <br />
|-<br />
| 1.3.0 <br />
| 26-Jan-2012 <br />
| Qt 4.6.2 <br />
| [[Media:Download$MITKPluginGenerator-1.3.0-Linux.tar.gz|MITKPluginGenerator-1.3.0-Linux.tar.gz]] <br />
| Build on Ubuntu 11.04 x64 <br />
| For 2012.02 <br />
|-<br />
| style="text-align:center;" colspan="6" |Windows binaries<br />
|-<br />
| 1.4.0 <br />
| 24-Feb-2012 <br />
| - <br />
| [[Media:Download$MITKPluginGenerator-1.4.0-win32.zip|MITKPluginGenerator-1.4.0-win32.zip]] <br />
| x32 binary <br />
| For 2012.06 <br />
|-<br />
| 1.3.0 <br />
| 26-Jan-2012 <br />
| - <br />
| [[Media:Download$MITKPluginGenerator-1.3.0-win32.zip|MITKPluginGenerator-1.3.0-win32.zip]] <br />
| x32 binary <br />
| For 2012.02 <br />
|}<br />
<br />
<br />
Sources:<br />
<br />
If the above binary downloads are not compatible with your system, you can download the Plugin Generator sources and build it yourself (basic CMake knowledge required).<br />
<br />
* [[Media:Download$MITKPluginGenerator-1.4.0-src-unix.tar.gz|MITKPluginGenerator-1.4.0-src-unix.tar.gz]] (UNIX style line endings)<br />
<br />
*[[Media:Download$MITKPluginGenerator-1.4.0-src-win32.zip|MITKPluginGenerator-1.4.0-src-win32.zip]] (Windows style line endings)</div>AndreasFetzerhttp://mitk.org/w/index.php?title=MITK_ReleaseNotes_2015.05&diff=2662MITK ReleaseNotes 2015.052015-06-18T11:35:54Z<p>AndreasFetzer: /* List of all contributors */</p>
<hr />
<div>[[File:Release2015-05.png|thumb|300px|MITK ReleaseNotes 2015.05]]<br />
<br />
This is the 2015.05 release of the [[MITK_Release_Cycle|MITK release cycle]]. You find a list of new features, bug fixes and known issues below:<br />
<br />
__TOC__<br />
<br />
<br />
== What is included? ==<br />
Binary installers for Windows, Mac OS X and Linux are provided, which contain the ''MITK Workbench'' application. In addition to image loading/saving and level windowing, the following plugins are included:<br />
<br />
* Volume Visualization<br />
* Measurement<br />
* Interactive Segmentation<br />
* Logging View<br />
* Remeshing<br />
* Pointset Interaction<br />
* Image Cropper<br />
* View Navigator<br />
* Screenshot Maker<br />
* Movie Maker<br />
* '''experimental''' Point-based, rigid and manual registration<br />
* '''experimental''' DICOM Query/Retrieve (based on components from the Common Toolkit [http://commontk.org CTK])<br />
<br />
Please note that the installers neither contain the source code nor header files of the precompiled libraries. To develop applications or plug-ins with MITK please get the [[Downloads#Source_code| source code]].<br />
<br />
<br />
== How to get it? ==<br />
Please have a look at the [[Downloads|download page]].<br />
<br />
<br />
== Highlights of 2015.05 release ==<br />
<br />
<br />
<br />
=== Build system ===<br />
* C++ 11 support (see [[MITK_C%2B%2B_11/14_Status|C++ 11/14 Status]])<br />
* CMake 3.2 is the minimum required version<br />
* Qt 5 is default for Windows and Linux, Qt 4 for Mac OS X<br />
* Minimum required compiler versions: GNU 4.7.3, Clang 3.4, AppleClang 5.0, MSVC 2012 <br />
* Directory layout has changed (e.g. external projects moved to top-level "ep" directory)<br />
* Source files of modules are organized in src and include directories<br />
<br />
<br />
=== Core modules ===<br />
* Cleanup of the geometry classes:<br />
** GeometryTransformHolder is a new helper class which manages the transform related variables. Its job is to keep all information about the transform (as e.g.: spacing, offset, transformation matrices) in consistent states. It provides getters and setters to all transformation related information. To make sure that the geometries are in a proper state, you should always use the set methods to change them.<br />
** BackTransform() function is removed. Please use WorldToIndex() instead.<br />
** The scaling factor in the PlaneGeometry class is removed. It can be calculated directly by GetExtent()/GetExtentInMM().<br />
** Pre- and Post-functions are removed and not necessary any more (except PreSetSpacing). New functions are CheckBounds() and CheckIndexToWorldTransform. Assertions can be implemented in these functions (e.g. see PlaneGeometry.cpp). If you implement these functions in a subclass, make sure to have an implementation of this function (e.g. inheritance BaseGeometry <- A <- B. Implementation of CheckBounds in class B needs implementation in A as well!).<br />
<br />
<br />
=== BlueBerry ===<br />
<br />
The MITK application framework BlueBerry got a lot of attention, resulting in a cleaner plug-in structure and an improved API. Standard MITK plug-ins will need no or only minimal code changes to be compatible with this new version.<br />
<br />
<br />
==== Removed Functionality ====<br />
<br />
The following deprecated functionality has been removed<br />
<br />
* BlueBerry plug-in system: The org.blueberry.compat plugin was removed and the non plug-in system related code from the org.blueberry.osgi and org.blueberry.solstice.common plug-ins was merged with the org.blueberry.core.runtime plug-in.<br />
<br />
<br />
==== Changed API ====<br />
<br />
* The org.blueberry.ui plug-in was merged with the org.blueberry.ui.qt plug-in, removing one level of indirection related to the usage of GUI classes within BlueBerry.<br />
* Many usages of STL containers and Poco types in method signatures have been replaced with their Qt counterparts. This may affect derived classes which need to adapt the signature of methods intended to override base class methods.<br />
* The berry::IApplication interface was changed to support an application context and generic return values<br />
* The org.blueberry.osgi.application extension point now requires the application id to be an attribute of the extension tag instead of the application tag.<br />
<br />
<br />
==== New Features ====<br />
<br />
* Commands and Handlers - A powerful mechanism for extending menus and toolbars. BlueBerry now implements the Eclipse command framework and provides the ''org.blueberry.ui.menus'' extension point for adding UI contributions to menus, toolbars, status bars and context menus. More detailed information about the concepts can be found in the original Eclipse documentation:<br />
** [http://help.eclipse.org/indigo/index.jsp?topic=%2Forg.eclipse.platform.doc.isv%2Fguide%2Fworkbench.htm Commands]<br />
** [http://help.eclipse.org/indigo/index.jsp?topic=%2Forg.eclipse.platform.doc.isv%2Fguide%2Fworkbench.htm Handlers]<br />
** [http://help.eclipse.org/indigo/index.jsp?topic=%2Forg.eclipse.platform.doc.isv%2Fguide%2Fworkbench.htm Menu extensions]<br />
** [http://wiki.eclipse.org/Command_Core_Expressions Command Core Expressions]<br />
* New plug-in and framework debugging features. BlueBerry makes use of the improved debugging facilities in the CTK Plugin Framework as described in [[How to enable debugging output]].<br />
<br />
<br />
=== Modules ===<br />
The following modules were added or factored out from existing modules:<br />
<br />
* AlgorithmsExt: Added the anisotropic iterative closest point registration algorithm (AICP) for surfaces<br />
* Multilabel Module: Contains data structures and mappers for displaying multilabel data<br />
* RDF: Containing basic support for dealing with RDF data<br />
* AppUtil: A utility module for launching BlueBerry applications<br />
<br />
<br />
==== Python ====<br />
* Fixed MITK-Python installers for all supported platforms with Qt4<br />
* Added documentation and build instructions for the MITK-Python module<br />
* Added build instructions for MITK-Python with Qt5 <br />
* Experimental Qt5 support<br />
* Upgraded to Numpy 1.9.2<br />
<br />
<br />
==== Segmentation ====<br />
* The 3D-interpolation has been extended to work on 4D-images as well.<br />
* Segmentation Utilities View was extended for a ContourModelToImage tab, which allows to convert contour data into an binary image<br />
* Morphological operators can now be applied in 2D<br />
<br />
<br />
==== MITK Navigation Modules (IGT, US and ToF) ====<br />
Please see [[MITK_IGT_ReleaseNotes_2015.05]].<br />
<br />
<br />
==== Diffusion ====<br />
* To ease maintenance, the DiffusionImage class has been removed. All functionality previously provided by the DiffusionImage can now be achieved by using the Image class. For an example of how to change your code see the [[DiffusionImageMigrationGuide]]<br />
* The new reader/writer concept, introduced in the last release, has enabled us to recognize and load .nrrd and .nii/.nii.gz images as diffusion weighted images if diffusion information is present. You no longer need to rename them to .dwi or .fsl/fslgz. You can still read the old files however.<br />
<br />
<br />
=== MITK Workbench ===<br />
<br />
* A new ''Perspectives'' preference page allows custom perspectives to be reset or removed.<br />
* Views are not listed as tool bar buttons any more. Instead the ''view shortcuts'' of the currently active perspective are shown in the ''Show View'' sub-menu.<br />
* A new ''Show View / Other...'' menu entry allows to browse all available views by category and keyword<br />
* A perspective shortcut list is now available in the ''Open Perspective'' sub-menu<br />
* The ''Open Perspective / Other...'' menu entry allows to browse and open any available perspective<br />
* If multiple workbench windows are open, the list of windows is displayed in the ''Window'' menu<br />
* A MRU list (most recently used) of editor inputs is shown in the ''File'' menu if the editor supports it.<br />
<br />
<br />
==== Third-Party Toolkits ====<br />
The following toolkits were updated:<br />
<br />
* OpenCV was updated to 2.4.11<br />
* VTK was updated to 6.2<br />
<br />
The following third-party toolkits were added to the MITK superbuild:<br />
<br />
* HDF5<br />
* Redland, Raptor, Rasqal for RDF support<br />
<br />
<br />
== Deprecated Functionality ==<br />
The documentation contains a detailed list of [http://docs.mitk.org/2015.05/deprecatedSince2015_05.html deprecated functionality].<br />
<br />
<br />
== Major Changes ahead ==<br />
<br />
We are currently working on restructuring a lot of Geometry and Interaction related code.<br />
This will lead to breaking changes that will be introduced '''after''' this release, so be sure to study the updated deprecated list. Most significant changes are<br />
<br />
* DisplayGeometry (will become obsolete)<br />
* Legacy Interaction will be completely removed<br />
<br />
Please be sure follow our annoucements on the MITK Mailing-List concerning these changes.<br />
<br />
<br />
== Bugfixes ==<br />
In the 6 months since the last release around [http://bugs.mitk.org/buglist.cgi?bug_severity=blocker&bug_severity=critical&bug_severity=major&bug_severity=medium&bug_severity=minor&bug_severity=trivial&bug_severity=unspecified&resolution=FIXED&chfieldto=2015-05-19&chfield=resolution&chfield=bug_status&query_format=advanced&chfieldfrom=2014-11-27&chfieldvalue=FIXED&bug_status=RESOLVED&component=Biophotonics&component=BlueBerry&component=Build%20system&component=Core&component=CoreApp%20Plugins&component=CoreUI&component=Diffusion%20Imaging&component=Documentation&component=IGT&component=Measurement%20%26%20Statistics&component=Modules&component=Other&component=Python%20Wrapping&component=QtWidgetModules&component=Rendering&component=Segmentation&component=ToF&component=Workbench%20Plugins&product=MITK&list_id=83681 240] bugs were fixed.<br />
<br />
<br />
== New feature list ==<br />
Complete list of new features since MITK 2014.10:<br />
<br />
{| class="wikitable" width=100% style="background-color:#ffffff;"<br />
!ID<br />
!Comp<br />
!Summary<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18781 18781]<br />
|BlueBerry<br />
|Logging View: Reset search filter button is missing<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18319 18319]<br />
|Build system<br />
|Update default build configuration with new release plugins<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18532 18532]<br />
|Build system<br />
|Enhance Module and Plugin Preset Configurations<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18118 18118]<br />
|Build system<br />
|Update SOFA to latest revision (18/09/2014).<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18657 18657]<br />
|Build system<br />
|Update ITK to version 4.7.0<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18765 18765]<br />
|Build system<br />
|move vigra and hdf5 open source<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18605 18605]<br />
|Build system<br />
|Support modern CMake and C++11 features<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18653 18653]<br />
|Core<br />
|Extend custom mime type by functions to get filename and extension<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=14866 14866]<br />
|Core<br />
|Make FileReader and FileWriter Microservice-based<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18850 18850]<br />
|Core<br />
|Allow setting point size for surface rendering<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18313 18313]<br />
|Diffusion<br />
|implement direction dependent fiber removal<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18568 18568]<br />
|Diffusion<br />
|implement improved method to process fiber bundle curvatures<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17928 17928]<br />
|Diffusion<br />
|Convert diffusion image to mitk image<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16656 16656]<br />
|Diffusion<br />
|Fiberextraction: placed planar figure should be automatically selected after placing<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18641 18641]<br />
|Diffusion<br />
|Support diffusion images in .nii format<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18767 18767]<br />
|Diffusion<br />
|move machine learning based tractography to MITK<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18844 18844]<br />
|Diffusion<br />
|Fiberfox: add partial fourier and move noise to k-space<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15459 15459]<br />
|Diffusion<br />
|Enable loading of SIEMENS MOSAIC DICOM diffusion files<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18182 18182]<br />
|IGT<br />
|IGT Release Candidates 2014-10<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18295 18295]<br />
|IGT<br />
|Add Virtual Tracking Device to UI of tracking toolbox<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18267 18267]<br />
|IGT<br />
|Feature to freeze navigation data source<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=8329 8329]<br />
|IGT<br />
|Integrate VirtualTrackingDevice into NavigationToolStorage<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=19005 19005]<br />
|IGT<br />
|Extend NavigationDataPlayer to work with .csv<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17739 17739]<br />
|Measurement<br />
|Change PlanarFigure::PolyLineElement to Point2D<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=14580 14580]<br />
|Measurement<br />
|Allow measurement on all data with geometry<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=14643 14643]<br />
|Measurement<br />
|Delete planar figures after selecting them in the four window view<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18481 18481]<br />
|Modules<br />
|Image to UnstructuredGrid filter<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18556 18556]<br />
|Modules<br />
|Add CopyDeep method to PlanarFigure<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18579 18579]<br />
|Modules<br />
|Move the mitkPlaneFit Filter from mbi to mitk<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18637 18637]<br />
|Modules<br />
|DBSCAN filter for unstructured grids in mitk<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18682 18682]<br />
|Modules<br />
|Add colorbar overlay<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18802 18802]<br />
|Modules<br />
|Create MitkSurfaceToPointSetFilter<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18886 18886]<br />
|Modules<br />
|New convenient methods to insert openCV images as time slice in mitk image<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18062 18062]<br />
|Modules<br />
|It should be possible to select nothing in QmitkDataStorageComboBox<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=14717 14717]<br />
|Python Wrapping<br />
|Add detailed Documentation for Python module and view<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18536 18536]<br />
|Rendering<br />
|Add Overlay flag to render mitkOverlays on top<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=9899 9899]<br />
|Rendering<br />
|Surfaces seem to be rendered in software modus<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=19044 19044]<br />
|Rendering<br />
|Transparent JET LUT<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17810 17810]<br />
|Segmentation<br />
|Enhance segmentation utilities with contourmodel to image functionality<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18541 18541]<br />
|Segmentation<br />
|Create module for multilabel segmentation<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18567 18567]<br />
|Segmentation<br />
|Enable 2D morphological operations in segmentation utility plugin<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16133 16133]<br />
|Segmentation<br />
|Provide 4D support for 3D interpolation<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18728 18728]<br />
|ToF<br />
|Create a Parameter Widget for Structure Sensor<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18423 18423]<br />
|ToF<br />
|View for saving screen shots of ToF images for calibration<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18222 18222]<br />
|Workbench<br />
|CMD Plugin does not support MiniApp<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18732 18732]<br />
|Workbench<br />
|Make Base data property list available in developer mode of Properties view<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18957 18957]<br />
|Workbench<br />
|Enhance Properties View Usability<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18219 18219]<br />
|Workbench<br />
|View navigator: copying perspective does not take into account changes made to copied perspective.<br />
|}<br />
<br />
<br />
== Known Issues ==<br />
<br />
Incomplete list of known issues affecting the binary release of MITK 2015.05:<br />
<br />
{| class="wikitable" width=100% style="background-color:#ffffff;"<br />
!ID<br />
!Comp<br />
!Summary<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=19054 19054]<br />
| BlueBerry<br />
| Save Perspective As dialog shows wrong item names<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=19057 19057]<br />
| BlueBerry<br />
| Context help will not open on F1 after starting<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=19089 19089]<br />
| BlueBerry<br />
| Some application menu entries are not shown on Mac OS X<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=19122 19122]<br />
| BlueBerry<br />
| Help Contents view contains only one entry on first start<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=19123 19123]<br />
| BlueBerry<br />
| "General" preferences pages missing on first start<br />
|}<br />
<br />
For a more complete and up-to-date list of all current major bugs check our [http://bugs.mitk.org/buglist.cgi?priority=high&priority=medium&priority=low&f1=creation_ts&list_id=83733&bug_severity=blocker&bug_severity=critical&bug_severity=major&o1=lessthan&resolution=---&query_format=advanced&bug_status=UNCONFIRMED&bug_status=CONFIRMED&bug_status=IN_PROGRESS&v1=2015-06-03&component=BlueBerry&component=Build%20system&component=Core&component=CoreApp%20Plugins&component=CoreUI&component=Documentation&component=Measurement%20%26%20Statistics&component=Modules&component=Other&component=Python%20Wrapping&component=QtWidgetModules&component=Rendering&component=Segmentation&component=Workbench%20Plugins&product=MITK bug tracker]<br />
<br />
== List of all contributors ==<br />
We want to thank all developers who contributed to the MITK 2015.05 release:<br />
<br />
* Adrian Winterstein<br />
* Alfred Franz<br />
* Andreas Fetzer<br />
* Caspar Goch<br />
* Christian Weber<br />
* Christoph Kolb<br />
* Daniel Knorr<br />
* Eric Heim<br />
* Esther Wild<br />
* Heather<br />
* Ingmar Wegner<br />
* Jan Hering<br />
* Jan Zieher<br />
* Jasmin Metzger<br />
* Jonas Cordes<br />
* Joseph Görres<br />
* Keno März<br />
* Marco Nolden<br />
* Markus Engel<br />
* Martin Klemm<br />
* Matt Clarkson<br />
* Matthias Eisenmann<br />
* Michael Brehler<br />
* Michael Goetz<br />
* Miklos Espak<br />
* Nico Riecker<br />
* Paul Mercea<br />
* Peter Neher<br />
* Rostislav Khlebnikov<br />
* Sandy Engelhardt<br />
* Sascha Zelzer<br />
* Sebastian Wirkert<br />
* Stefan Kislinskiy<br />
* Thomas Kilgus<br />
* Thomas Kirchner<br />
* Tobias Norajitra<br />
* Vincent Reuter</div>AndreasFetzerhttp://mitk.org/w/index.php?title=MITK_ReleaseNotes_2015.05&diff=2661MITK ReleaseNotes 2015.052015-06-18T10:57:49Z<p>AndreasFetzer: /* List of all contributors */</p>
<hr />
<div>[[File:Release2015-05.png|thumb|300px|MITK ReleaseNotes 2015.05]]<br />
<br />
This is the 2015.05 release of the [[MITK_Release_Cycle|MITK release cycle]]. You find a list of new features, bug fixes and known issues below:<br />
<br />
__TOC__<br />
<br />
<br />
== What is included? ==<br />
Binary installers for Windows, Mac OS X and Linux are provided, which contain the ''MITK Workbench'' application. In addition to image loading/saving and level windowing, the following plugins are included:<br />
<br />
* Volume Visualization<br />
* Measurement<br />
* Interactive Segmentation<br />
* Logging View<br />
* Remeshing<br />
* Pointset Interaction<br />
* Image Cropper<br />
* View Navigator<br />
* Screenshot Maker<br />
* Movie Maker<br />
* '''experimental''' Point-based, rigid and manual registration<br />
* '''experimental''' DICOM Query/Retrieve (based on components from the Common Toolkit [http://commontk.org CTK])<br />
<br />
Please note that the installers neither contain the source code nor header files of the precompiled libraries. To develop applications or plug-ins with MITK please get the [[Downloads#Source_code| source code]].<br />
<br />
<br />
== How to get it? ==<br />
Please have a look at the [[Downloads|download page]].<br />
<br />
<br />
== Highlights of 2015.05 release ==<br />
<br />
<br />
<br />
=== Build system ===<br />
* C++ 11 support (see [[MITK_C%2B%2B_11/14_Status|C++ 11/14 Status]])<br />
* CMake 3.2 is the minimum required version<br />
* Qt 5 is default for Windows and Linux, Qt 4 for Mac OS X<br />
* Minimum required compiler versions: GNU 4.7.3, Clang 3.4, AppleClang 5.0, MSVC 2012 <br />
* Directory layout has changed (e.g. external projects moved to top-level "ep" directory)<br />
* Source files of modules are organized in src and include directories<br />
<br />
<br />
=== Core modules ===<br />
* Cleanup of the geometry classes:<br />
** GeometryTransformHolder is a new helper class which manages the transform related variables. Its job is to keep all information about the transform (as e.g.: spacing, offset, transformation matrices) in consistent states. It provides getters and setters to all transformation related information. To make sure that the geometries are in a proper state, you should always use the set methods to change them.<br />
** BackTransform() function is removed. Please use WorldToIndex() instead.<br />
** The scaling factor in the PlaneGeometry class is removed. It can be calculated directly by GetExtent()/GetExtentInMM().<br />
** Pre- and Post-functions are removed and not necessary any more (except PreSetSpacing). New functions are CheckBounds() and CheckIndexToWorldTransform. Assertions can be implemented in these functions (e.g. see PlaneGeometry.cpp). If you implement these functions in a subclass, make sure to have an implementation of this function (e.g. inheritance BaseGeometry <- A <- B. Implementation of CheckBounds in class B needs implementation in A as well!).<br />
<br />
<br />
=== BlueBerry ===<br />
<br />
The MITK application framework BlueBerry got a lot of attention, resulting in a cleaner plug-in structure and an improved API. Standard MITK plug-ins will need no or only minimal code changes to be compatible with this new version.<br />
<br />
<br />
==== Removed Functionality ====<br />
<br />
The following deprecated functionality has been removed<br />
<br />
* BlueBerry plug-in system: The org.blueberry.compat plugin was removed and the non plug-in system related code from the org.blueberry.osgi and org.blueberry.solstice.common plug-ins was merged with the org.blueberry.core.runtime plug-in.<br />
<br />
<br />
==== Changed API ====<br />
<br />
* The org.blueberry.ui plug-in was merged with the org.blueberry.ui.qt plug-in, removing one level of indirection related to the usage of GUI classes within BlueBerry.<br />
* Many usages of STL containers and Poco types in method signatures have been replaced with their Qt counterparts. This may affect derived classes which need to adapt the signature of methods intended to override base class methods.<br />
* The berry::IApplication interface was changed to support an application context and generic return values<br />
* The org.blueberry.osgi.application extension point now requires the application id to be an attribute of the extension tag instead of the application tag.<br />
<br />
<br />
==== New Features ====<br />
<br />
* Commands and Handlers - A powerful mechanism for extending menus and toolbars. BlueBerry now implements the Eclipse command framework and provides the ''org.blueberry.ui.menus'' extension point for adding UI contributions to menus, toolbars, status bars and context menus. More detailed information about the concepts can be found in the original Eclipse documentation:<br />
** [http://help.eclipse.org/indigo/index.jsp?topic=%2Forg.eclipse.platform.doc.isv%2Fguide%2Fworkbench.htm Commands]<br />
** [http://help.eclipse.org/indigo/index.jsp?topic=%2Forg.eclipse.platform.doc.isv%2Fguide%2Fworkbench.htm Handlers]<br />
** [http://help.eclipse.org/indigo/index.jsp?topic=%2Forg.eclipse.platform.doc.isv%2Fguide%2Fworkbench.htm Menu extensions]<br />
** [http://wiki.eclipse.org/Command_Core_Expressions Command Core Expressions]<br />
* New plug-in and framework debugging features. BlueBerry makes use of the improved debugging facilities in the CTK Plugin Framework as described in [[How to enable debugging output]].<br />
<br />
<br />
=== Modules ===<br />
The following modules were added or factored out from existing modules:<br />
<br />
* AlgorithmsExt: Added the anisotropic iterative closest point registration algorithm (AICP) for surfaces<br />
* Multilabel Module: Contains data structures and mappers for displaying multilabel data<br />
* RDF: Containing basic support for dealing with RDF data<br />
* AppUtil: A utility module for launching BlueBerry applications<br />
<br />
<br />
==== Python ====<br />
* Fixed MITK-Python installers for all supported platforms with Qt4<br />
* Added documentation and build instructions for the MITK-Python module<br />
* Added build instructions for MITK-Python with Qt5 <br />
* Experimental Qt5 support<br />
* Upgraded to Numpy 1.9.2<br />
<br />
<br />
==== Segmentation ====<br />
* The 3D-interpolation has been extended to work on 4D-images as well.<br />
* Segmentation Utilities View was extended for a ContourModelToImage tab, which allows to convert contour data into an binary image<br />
* Morphological operators can now be applied in 2D<br />
<br />
<br />
==== MITK Navigation Modules (IGT, US and ToF) ====<br />
Please see [[MITK_IGT_ReleaseNotes_2015.05]].<br />
<br />
<br />
==== Diffusion ====<br />
* To ease maintenance, the DiffusionImage class has been removed. All functionality previously provided by the DiffusionImage can now be achieved by using the Image class. For an example of how to change your code see the [[DiffusionImageMigrationGuide]]<br />
* The new reader/writer concept, introduced in the last release, has enabled us to recognize and load .nrrd and .nii/.nii.gz images as diffusion weighted images if diffusion information is present. You no longer need to rename them to .dwi or .fsl/fslgz. You can still read the old files however.<br />
<br />
<br />
=== MITK Workbench ===<br />
<br />
* A new ''Perspectives'' preference page allows custom perspectives to be reset or removed.<br />
* Views are not listed as tool bar buttons any more. Instead the ''view shortcuts'' of the currently active perspective are shown in the ''Show View'' sub-menu.<br />
* A new ''Show View / Other...'' menu entry allows to browse all available views by category and keyword<br />
* A perspective shortcut list is now available in the ''Open Perspective'' sub-menu<br />
* The ''Open Perspective / Other...'' menu entry allows to browse and open any available perspective<br />
* If multiple workbench windows are open, the list of windows is displayed in the ''Window'' menu<br />
* A MRU list (most recently used) of editor inputs is shown in the ''File'' menu if the editor supports it.<br />
<br />
<br />
==== Third-Party Toolkits ====<br />
The following toolkits were updated:<br />
<br />
* OpenCV was updated to 2.4.11<br />
* VTK was updated to 6.2<br />
<br />
The following third-party toolkits were added to the MITK superbuild:<br />
<br />
* HDF5<br />
* Redland, Raptor, Rasqal for RDF support<br />
<br />
<br />
== Deprecated Functionality ==<br />
The documentation contains a detailed list of [http://docs.mitk.org/2015.05/deprecatedSince2015_05.html deprecated functionality].<br />
<br />
<br />
== Major Changes ahead ==<br />
<br />
We are currently working on restructuring a lot of Geometry and Interaction related code.<br />
This will lead to breaking changes that will be introduced '''after''' this release, so be sure to study the updated deprecated list. Most significant changes are<br />
<br />
* DisplayGeometry (will become obsolete)<br />
* Legacy Interaction will be completely removed<br />
<br />
Please be sure follow our annoucements on the MITK Mailing-List concerning these changes.<br />
<br />
<br />
== Bugfixes ==<br />
In the 6 months since the last release around [http://bugs.mitk.org/buglist.cgi?bug_severity=blocker&bug_severity=critical&bug_severity=major&bug_severity=medium&bug_severity=minor&bug_severity=trivial&bug_severity=unspecified&resolution=FIXED&chfieldto=2015-05-19&chfield=resolution&chfield=bug_status&query_format=advanced&chfieldfrom=2014-11-27&chfieldvalue=FIXED&bug_status=RESOLVED&component=Biophotonics&component=BlueBerry&component=Build%20system&component=Core&component=CoreApp%20Plugins&component=CoreUI&component=Diffusion%20Imaging&component=Documentation&component=IGT&component=Measurement%20%26%20Statistics&component=Modules&component=Other&component=Python%20Wrapping&component=QtWidgetModules&component=Rendering&component=Segmentation&component=ToF&component=Workbench%20Plugins&product=MITK&list_id=83681 240] bugs were fixed.<br />
<br />
<br />
== New feature list ==<br />
Complete list of new features since MITK 2014.10:<br />
<br />
{| class="wikitable" width=100% style="background-color:#ffffff;"<br />
!ID<br />
!Comp<br />
!Summary<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18781 18781]<br />
|BlueBerry<br />
|Logging View: Reset search filter button is missing<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18319 18319]<br />
|Build system<br />
|Update default build configuration with new release plugins<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18532 18532]<br />
|Build system<br />
|Enhance Module and Plugin Preset Configurations<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18118 18118]<br />
|Build system<br />
|Update SOFA to latest revision (18/09/2014).<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18657 18657]<br />
|Build system<br />
|Update ITK to version 4.7.0<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18765 18765]<br />
|Build system<br />
|move vigra and hdf5 open source<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18605 18605]<br />
|Build system<br />
|Support modern CMake and C++11 features<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18653 18653]<br />
|Core<br />
|Extend custom mime type by functions to get filename and extension<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=14866 14866]<br />
|Core<br />
|Make FileReader and FileWriter Microservice-based<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18850 18850]<br />
|Core<br />
|Allow setting point size for surface rendering<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18313 18313]<br />
|Diffusion<br />
|implement direction dependent fiber removal<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18568 18568]<br />
|Diffusion<br />
|implement improved method to process fiber bundle curvatures<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17928 17928]<br />
|Diffusion<br />
|Convert diffusion image to mitk image<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16656 16656]<br />
|Diffusion<br />
|Fiberextraction: placed planar figure should be automatically selected after placing<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18641 18641]<br />
|Diffusion<br />
|Support diffusion images in .nii format<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18767 18767]<br />
|Diffusion<br />
|move machine learning based tractography to MITK<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18844 18844]<br />
|Diffusion<br />
|Fiberfox: add partial fourier and move noise to k-space<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15459 15459]<br />
|Diffusion<br />
|Enable loading of SIEMENS MOSAIC DICOM diffusion files<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18182 18182]<br />
|IGT<br />
|IGT Release Candidates 2014-10<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18295 18295]<br />
|IGT<br />
|Add Virtual Tracking Device to UI of tracking toolbox<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18267 18267]<br />
|IGT<br />
|Feature to freeze navigation data source<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=8329 8329]<br />
|IGT<br />
|Integrate VirtualTrackingDevice into NavigationToolStorage<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=19005 19005]<br />
|IGT<br />
|Extend NavigationDataPlayer to work with .csv<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17739 17739]<br />
|Measurement<br />
|Change PlanarFigure::PolyLineElement to Point2D<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=14580 14580]<br />
|Measurement<br />
|Allow measurement on all data with geometry<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=14643 14643]<br />
|Measurement<br />
|Delete planar figures after selecting them in the four window view<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18481 18481]<br />
|Modules<br />
|Image to UnstructuredGrid filter<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18556 18556]<br />
|Modules<br />
|Add CopyDeep method to PlanarFigure<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18579 18579]<br />
|Modules<br />
|Move the mitkPlaneFit Filter from mbi to mitk<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18637 18637]<br />
|Modules<br />
|DBSCAN filter for unstructured grids in mitk<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18682 18682]<br />
|Modules<br />
|Add colorbar overlay<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18802 18802]<br />
|Modules<br />
|Create MitkSurfaceToPointSetFilter<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18886 18886]<br />
|Modules<br />
|New convenient methods to insert openCV images as time slice in mitk image<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18062 18062]<br />
|Modules<br />
|It should be possible to select nothing in QmitkDataStorageComboBox<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=14717 14717]<br />
|Python Wrapping<br />
|Add detailed Documentation for Python module and view<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18536 18536]<br />
|Rendering<br />
|Add Overlay flag to render mitkOverlays on top<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=9899 9899]<br />
|Rendering<br />
|Surfaces seem to be rendered in software modus<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=19044 19044]<br />
|Rendering<br />
|Transparent JET LUT<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17810 17810]<br />
|Segmentation<br />
|Enhance segmentation utilities with contourmodel to image functionality<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18541 18541]<br />
|Segmentation<br />
|Create module for multilabel segmentation<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18567 18567]<br />
|Segmentation<br />
|Enable 2D morphological operations in segmentation utility plugin<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16133 16133]<br />
|Segmentation<br />
|Provide 4D support for 3D interpolation<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18728 18728]<br />
|ToF<br />
|Create a Parameter Widget for Structure Sensor<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18423 18423]<br />
|ToF<br />
|View for saving screen shots of ToF images for calibration<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18222 18222]<br />
|Workbench<br />
|CMD Plugin does not support MiniApp<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18732 18732]<br />
|Workbench<br />
|Make Base data property list available in developer mode of Properties view<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18957 18957]<br />
|Workbench<br />
|Enhance Properties View Usability<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18219 18219]<br />
|Workbench<br />
|View navigator: copying perspective does not take into account changes made to copied perspective.<br />
|}<br />
<br />
<br />
== Known Issues ==<br />
<br />
Incomplete list of known issues affecting the binary release of MITK 2015.05:<br />
<br />
{| class="wikitable" width=100% style="background-color:#ffffff;"<br />
!ID<br />
!Comp<br />
!Summary<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=19054 19054]<br />
| BlueBerry<br />
| Save Perspective As dialog shows wrong item names<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=19057 19057]<br />
| BlueBerry<br />
| Context help will not open on F1 after starting<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=19089 19089]<br />
| BlueBerry<br />
| Some application menu entries are not shown on Mac OS X<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=19122 19122]<br />
| BlueBerry<br />
| Help Contents view contains only one entry on first start<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=19123 19123]<br />
| BlueBerry<br />
| "General" preferences pages missing on first start<br />
|}<br />
<br />
For a more complete and up-to-date list of all current major bugs check our [http://bugs.mitk.org/buglist.cgi?priority=high&priority=medium&priority=low&f1=creation_ts&list_id=83733&bug_severity=blocker&bug_severity=critical&bug_severity=major&o1=lessthan&resolution=---&query_format=advanced&bug_status=UNCONFIRMED&bug_status=CONFIRMED&bug_status=IN_PROGRESS&v1=2015-06-03&component=BlueBerry&component=Build%20system&component=Core&component=CoreApp%20Plugins&component=CoreUI&component=Documentation&component=Measurement%20%26%20Statistics&component=Modules&component=Other&component=Python%20Wrapping&component=QtWidgetModules&component=Rendering&component=Segmentation&component=Workbench%20Plugins&product=MITK bug tracker]<br />
<br />
== List of all contributors ==<br />
We want to thank all developers who contributed to the MITK 2015.05 release:<br />
<br />
* Alfred Franz<br />
* Andreas Fetzer<br />
* Caspar Goch<br />
* Christian Weber<br />
* Christoph Kolb<br />
* Daniel Knorr<br />
* Eric Heim<br />
* Esther Wild<br />
* Heather<br />
* Ingmar Wegner<br />
* Jan Hering<br />
* Jan Zieher<br />
* Jasmin Metzger<br />
* Jonas Cordes<br />
* Joseph Görres<br />
* Keno März<br />
* Marco Nolden<br />
* Markus Engel<br />
* Martin Klemm<br />
* Matt Clarkson<br />
* Matthias Eisenmann<br />
* Michael Brehler<br />
* Michael Goetz<br />
* Miklos Espak<br />
* Nico Riecker<br />
* Paul Mercea<br />
* Peter Neher<br />
* Rostislav Khlebnikov<br />
* Sandy Engelhardt<br />
* Sascha Zelzer<br />
* Sebastian Wirkert<br />
* Stefan Kislinskiy<br />
* Thomas Kilgus<br />
* Thomas Kirchner<br />
* Tobias Norajitra<br />
* unknown (yes, we are also grateful for this anonymous contribution ;-) )<br />
* Vincent Reuter</div>AndreasFetzerhttp://mitk.org/w/index.php?title=MITK_ReleaseNotes_2015.05&diff=2660MITK ReleaseNotes 2015.052015-06-18T10:29:19Z<p>AndreasFetzer: </p>
<hr />
<div>[[File:Release2015-05.png|thumb|300px|MITK ReleaseNotes 2015.05]]<br />
<br />
This is the 2015.05 release of the [[MITK_Release_Cycle|MITK release cycle]]. You find a list of new features, bug fixes and known issues below:<br />
<br />
__TOC__<br />
<br />
<br />
== What is included? ==<br />
Binary installers for Windows, Mac OS X and Linux are provided, which contain the ''MITK Workbench'' application. In addition to image loading/saving and level windowing, the following plugins are included:<br />
<br />
* Volume Visualization<br />
* Measurement<br />
* Interactive Segmentation<br />
* Logging View<br />
* Remeshing<br />
* Pointset Interaction<br />
* Image Cropper<br />
* View Navigator<br />
* Screenshot Maker<br />
* Movie Maker<br />
* '''experimental''' Point-based, rigid and manual registration<br />
* '''experimental''' DICOM Query/Retrieve (based on components from the Common Toolkit [http://commontk.org CTK])<br />
<br />
Please note that the installers neither contain the source code nor header files of the precompiled libraries. To develop applications or plug-ins with MITK please get the [[Downloads#Source_code| source code]].<br />
<br />
<br />
== How to get it? ==<br />
Please have a look at the [[Downloads|download page]].<br />
<br />
<br />
== Highlights of 2015.05 release ==<br />
<br />
<br />
<br />
=== Build system ===<br />
* C++ 11 support (see [[MITK_C%2B%2B_11/14_Status|C++ 11/14 Status]])<br />
* CMake 3.2 is the minimum required version<br />
* Qt 5 is default for Windows and Linux, Qt 4 for Mac OS X<br />
* Minimum required compiler versions: GNU 4.7.3, Clang 3.4, AppleClang 5.0, MSVC 2012 <br />
* Directory layout has changed (e.g. external projects moved to top-level "ep" directory)<br />
* Source files of modules are organized in src and include directories<br />
<br />
<br />
=== Core modules ===<br />
* Cleanup of the geometry classes:<br />
** GeometryTransformHolder is a new helper class which manages the transform related variables. Its job is to keep all information about the transform (as e.g.: spacing, offset, transformation matrices) in consistent states. It provides getters and setters to all transformation related information. To make sure that the geometries are in a proper state, you should always use the set methods to change them.<br />
** BackTransform() function is removed. Please use WorldToIndex() instead.<br />
** The scaling factor in the PlaneGeometry class is removed. It can be calculated directly by GetExtent()/GetExtentInMM().<br />
** Pre- and Post-functions are removed and not necessary any more (except PreSetSpacing). New functions are CheckBounds() and CheckIndexToWorldTransform. Assertions can be implemented in these functions (e.g. see PlaneGeometry.cpp). If you implement these functions in a subclass, make sure to have an implementation of this function (e.g. inheritance BaseGeometry <- A <- B. Implementation of CheckBounds in class B needs implementation in A as well!).<br />
<br />
<br />
=== BlueBerry ===<br />
<br />
The MITK application framework BlueBerry got a lot of attention, resulting in a cleaner plug-in structure and an improved API. Standard MITK plug-ins will need no or only minimal code changes to be compatible with this new version.<br />
<br />
<br />
==== Removed Functionality ====<br />
<br />
The following deprecated functionality has been removed<br />
<br />
* BlueBerry plug-in system: The org.blueberry.compat plugin was removed and the non plug-in system related code from the org.blueberry.osgi and org.blueberry.solstice.common plug-ins was merged with the org.blueberry.core.runtime plug-in.<br />
<br />
<br />
==== Changed API ====<br />
<br />
* The org.blueberry.ui plug-in was merged with the org.blueberry.ui.qt plug-in, removing one level of indirection related to the usage of GUI classes within BlueBerry.<br />
* Many usages of STL containers and Poco types in method signatures have been replaced with their Qt counterparts. This may affect derived classes which need to adapt the signature of methods intended to override base class methods.<br />
* The berry::IApplication interface was changed to support an application context and generic return values<br />
* The org.blueberry.osgi.application extension point now requires the application id to be an attribute of the extension tag instead of the application tag.<br />
<br />
<br />
==== New Features ====<br />
<br />
* Commands and Handlers - A powerful mechanism for extending menus and toolbars. BlueBerry now implements the Eclipse command framework and provides the ''org.blueberry.ui.menus'' extension point for adding UI contributions to menus, toolbars, status bars and context menus. More detailed information about the concepts can be found in the original Eclipse documentation:<br />
** [http://help.eclipse.org/indigo/index.jsp?topic=%2Forg.eclipse.platform.doc.isv%2Fguide%2Fworkbench.htm Commands]<br />
** [http://help.eclipse.org/indigo/index.jsp?topic=%2Forg.eclipse.platform.doc.isv%2Fguide%2Fworkbench.htm Handlers]<br />
** [http://help.eclipse.org/indigo/index.jsp?topic=%2Forg.eclipse.platform.doc.isv%2Fguide%2Fworkbench.htm Menu extensions]<br />
** [http://wiki.eclipse.org/Command_Core_Expressions Command Core Expressions]<br />
* New plug-in and framework debugging features. BlueBerry makes use of the improved debugging facilities in the CTK Plugin Framework as described in [[How to enable debugging output]].<br />
<br />
<br />
=== Modules ===<br />
The following modules were added or factored out from existing modules:<br />
<br />
* AlgorithmsExt: Added the anisotropic iterative closest point registration algorithm (AICP) for surfaces<br />
* Multilabel Module: Contains data structures and mappers for displaying multilabel data<br />
* RDF: Containing basic support for dealing with RDF data<br />
* AppUtil: A utility module for launching BlueBerry applications<br />
<br />
<br />
==== Python ====<br />
* Fixed MITK-Python installers for all supported platforms with Qt4<br />
* Added documentation and build instructions for the MITK-Python module<br />
* Added build instructions for MITK-Python with Qt5 <br />
* Experimental Qt5 support<br />
* Upgraded to Numpy 1.9.2<br />
<br />
<br />
==== Segmentation ====<br />
* The 3D-interpolation has been extended to work on 4D-images as well.<br />
* Segmentation Utilities View was extended for a ContourModelToImage tab, which allows to convert contour data into an binary image<br />
* Morphological operators can now be applied in 2D<br />
<br />
<br />
==== MITK Navigation Modules (IGT, US and ToF) ====<br />
Please see [[MITK_IGT_ReleaseNotes_2015.05]].<br />
<br />
<br />
==== Diffusion ====<br />
* To ease maintenance, the DiffusionImage class has been removed. All functionality previously provided by the DiffusionImage can now be achieved by using the Image class. For an example of how to change your code see the [[DiffusionImageMigrationGuide]]<br />
* The new reader/writer concept, introduced in the last release, has enabled us to recognize and load .nrrd and .nii/.nii.gz images as diffusion weighted images if diffusion information is present. You no longer need to rename them to .dwi or .fsl/fslgz. You can still read the old files however.<br />
<br />
<br />
=== MITK Workbench ===<br />
<br />
* A new ''Perspectives'' preference page allows custom perspectives to be reset or removed.<br />
* Views are not listed as tool bar buttons any more. Instead the ''view shortcuts'' of the currently active perspective are shown in the ''Show View'' sub-menu.<br />
* A new ''Show View / Other...'' menu entry allows to browse all available views by category and keyword<br />
* A perspective shortcut list is now available in the ''Open Perspective'' sub-menu<br />
* The ''Open Perspective / Other...'' menu entry allows to browse and open any available perspective<br />
* If multiple workbench windows are open, the list of windows is displayed in the ''Window'' menu<br />
* A MRU list (most recently used) of editor inputs is shown in the ''File'' menu if the editor supports it.<br />
<br />
<br />
==== Third-Party Toolkits ====<br />
The following toolkits were updated:<br />
<br />
* OpenCV was updated to 2.4.11<br />
* VTK was updated to 6.2<br />
<br />
The following third-party toolkits were added to the MITK superbuild:<br />
<br />
* HDF5<br />
* Redland, Raptor, Rasqal for RDF support<br />
<br />
<br />
== Deprecated Functionality ==<br />
The documentation contains a detailed list of [http://docs.mitk.org/2015.05/deprecatedSince2015_05.html deprecated functionality].<br />
<br />
<br />
== Major Changes ahead ==<br />
<br />
We are currently working on restructuring a lot of Geometry and Interaction related code.<br />
This will lead to breaking changes that will be introduced '''after''' this release, so be sure to study the updated deprecated list. Most significant changes are<br />
<br />
* DisplayGeometry (will become obsolete)<br />
* Legacy Interaction will be completely removed<br />
<br />
Please be sure follow our annoucements on the MITK Mailing-List concerning these changes.<br />
<br />
<br />
== Bugfixes ==<br />
In the 6 months since the last release around [http://bugs.mitk.org/buglist.cgi?bug_severity=blocker&bug_severity=critical&bug_severity=major&bug_severity=medium&bug_severity=minor&bug_severity=trivial&bug_severity=unspecified&resolution=FIXED&chfieldto=2015-05-19&chfield=resolution&chfield=bug_status&query_format=advanced&chfieldfrom=2014-11-27&chfieldvalue=FIXED&bug_status=RESOLVED&component=Biophotonics&component=BlueBerry&component=Build%20system&component=Core&component=CoreApp%20Plugins&component=CoreUI&component=Diffusion%20Imaging&component=Documentation&component=IGT&component=Measurement%20%26%20Statistics&component=Modules&component=Other&component=Python%20Wrapping&component=QtWidgetModules&component=Rendering&component=Segmentation&component=ToF&component=Workbench%20Plugins&product=MITK&list_id=83681 240] bugs were fixed.<br />
<br />
<br />
== New feature list ==<br />
Complete list of new features since MITK 2014.10:<br />
<br />
{| class="wikitable" width=100% style="background-color:#ffffff;"<br />
!ID<br />
!Comp<br />
!Summary<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18781 18781]<br />
|BlueBerry<br />
|Logging View: Reset search filter button is missing<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18319 18319]<br />
|Build system<br />
|Update default build configuration with new release plugins<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18532 18532]<br />
|Build system<br />
|Enhance Module and Plugin Preset Configurations<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18118 18118]<br />
|Build system<br />
|Update SOFA to latest revision (18/09/2014).<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18657 18657]<br />
|Build system<br />
|Update ITK to version 4.7.0<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18765 18765]<br />
|Build system<br />
|move vigra and hdf5 open source<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18605 18605]<br />
|Build system<br />
|Support modern CMake and C++11 features<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18653 18653]<br />
|Core<br />
|Extend custom mime type by functions to get filename and extension<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=14866 14866]<br />
|Core<br />
|Make FileReader and FileWriter Microservice-based<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18850 18850]<br />
|Core<br />
|Allow setting point size for surface rendering<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18313 18313]<br />
|Diffusion<br />
|implement direction dependent fiber removal<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18568 18568]<br />
|Diffusion<br />
|implement improved method to process fiber bundle curvatures<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17928 17928]<br />
|Diffusion<br />
|Convert diffusion image to mitk image<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16656 16656]<br />
|Diffusion<br />
|Fiberextraction: placed planar figure should be automatically selected after placing<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18641 18641]<br />
|Diffusion<br />
|Support diffusion images in .nii format<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18767 18767]<br />
|Diffusion<br />
|move machine learning based tractography to MITK<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18844 18844]<br />
|Diffusion<br />
|Fiberfox: add partial fourier and move noise to k-space<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15459 15459]<br />
|Diffusion<br />
|Enable loading of SIEMENS MOSAIC DICOM diffusion files<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18182 18182]<br />
|IGT<br />
|IGT Release Candidates 2014-10<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18295 18295]<br />
|IGT<br />
|Add Virtual Tracking Device to UI of tracking toolbox<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18267 18267]<br />
|IGT<br />
|Feature to freeze navigation data source<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=8329 8329]<br />
|IGT<br />
|Integrate VirtualTrackingDevice into NavigationToolStorage<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=19005 19005]<br />
|IGT<br />
|Extend NavigationDataPlayer to work with .csv<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17739 17739]<br />
|Measurement<br />
|Change PlanarFigure::PolyLineElement to Point2D<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=14580 14580]<br />
|Measurement<br />
|Allow measurement on all data with geometry<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=14643 14643]<br />
|Measurement<br />
|Delete planar figures after selecting them in the four window view<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18481 18481]<br />
|Modules<br />
|Image to UnstructuredGrid filter<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18556 18556]<br />
|Modules<br />
|Add CopyDeep method to PlanarFigure<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18579 18579]<br />
|Modules<br />
|Move the mitkPlaneFit Filter from mbi to mitk<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18637 18637]<br />
|Modules<br />
|DBSCAN filter for unstructured grids in mitk<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18682 18682]<br />
|Modules<br />
|Add colorbar overlay<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18802 18802]<br />
|Modules<br />
|Create MitkSurfaceToPointSetFilter<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18886 18886]<br />
|Modules<br />
|New convenient methods to insert openCV images as time slice in mitk image<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18062 18062]<br />
|Modules<br />
|It should be possible to select nothing in QmitkDataStorageComboBox<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=14717 14717]<br />
|Python Wrapping<br />
|Add detailed Documentation for Python module and view<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18536 18536]<br />
|Rendering<br />
|Add Overlay flag to render mitkOverlays on top<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=9899 9899]<br />
|Rendering<br />
|Surfaces seem to be rendered in software modus<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=19044 19044]<br />
|Rendering<br />
|Transparent JET LUT<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17810 17810]<br />
|Segmentation<br />
|Enhance segmentation utilities with contourmodel to image functionality<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18541 18541]<br />
|Segmentation<br />
|Create module for multilabel segmentation<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18567 18567]<br />
|Segmentation<br />
|Enable 2D morphological operations in segmentation utility plugin<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16133 16133]<br />
|Segmentation<br />
|Provide 4D support for 3D interpolation<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18728 18728]<br />
|ToF<br />
|Create a Parameter Widget for Structure Sensor<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18423 18423]<br />
|ToF<br />
|View for saving screen shots of ToF images for calibration<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18222 18222]<br />
|Workbench<br />
|CMD Plugin does not support MiniApp<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18732 18732]<br />
|Workbench<br />
|Make Base data property list available in developer mode of Properties view<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18957 18957]<br />
|Workbench<br />
|Enhance Properties View Usability<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18219 18219]<br />
|Workbench<br />
|View navigator: copying perspective does not take into account changes made to copied perspective.<br />
|}<br />
<br />
<br />
== Known Issues ==<br />
<br />
Incomplete list of known issues affecting the binary release of MITK 2015.05:<br />
<br />
{| class="wikitable" width=100% style="background-color:#ffffff;"<br />
!ID<br />
!Comp<br />
!Summary<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=19054 19054]<br />
| BlueBerry<br />
| Save Perspective As dialog shows wrong item names<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=19057 19057]<br />
| BlueBerry<br />
| Context help will not open on F1 after starting<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=19089 19089]<br />
| BlueBerry<br />
| Some application menu entries are not shown on Mac OS X<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=19122 19122]<br />
| BlueBerry<br />
| Help Contents view contains only one entry on first start<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=19123 19123]<br />
| BlueBerry<br />
| "General" preferences pages missing on first start<br />
|}<br />
<br />
For a more complete and up-to-date list of all current major bugs check our [http://bugs.mitk.org/buglist.cgi?priority=high&priority=medium&priority=low&f1=creation_ts&list_id=83733&bug_severity=blocker&bug_severity=critical&bug_severity=major&o1=lessthan&resolution=---&query_format=advanced&bug_status=UNCONFIRMED&bug_status=CONFIRMED&bug_status=IN_PROGRESS&v1=2015-06-03&component=BlueBerry&component=Build%20system&component=Core&component=CoreApp%20Plugins&component=CoreUI&component=Documentation&component=Measurement%20%26%20Statistics&component=Modules&component=Other&component=Python%20Wrapping&component=QtWidgetModules&component=Rendering&component=Segmentation&component=Workbench%20Plugins&product=MITK bug tracker]<br />
<br />
== List of all contributors ==<br />
We want to thank all developers who contributed to the MITK 2015.05 release:<br />
<br />
* Alfred Franz<br />
* Andreas Fetzer<br />
* Caspar Goch<br />
* Christian Weber<br />
* Christoph Kolb<br />
* Daniel Knorr<br />
* Eric Heim<br />
* Esther Wild<br />
* Heather<br />
* Ingmar Wegner<br />
* Jan Hering<br />
* Jan Zieher<br />
* Jasmin Metzger<br />
* Jonas Cordes<br />
* Joseph Görres<br />
* Keno März<br />
* Marco Nolden<br />
* Markus Engel<br />
* Martin Klemm<br />
* Matt Clarkson<br />
* Matthias Eisenmann<br />
* Michael Brehler<br />
* Michael Goetz<br />
* Miklos Espak<br />
* Nico Riecker<br />
* Paul Mercea<br />
* Peter Neher<br />
* Rostislav Khlebnikov<br />
* Sandy Engelhardt<br />
* Sascha Zelzer<br />
* Sebastian Wirkert<br />
* Stefan Kislinskiy<br />
* Thomas Kilgus<br />
* Thomas Kirchner<br />
* Tobias Norajitra<br />
* unknown<br />
* Vincent Reuter</div>AndreasFetzerhttp://mitk.org/w/index.php?title=Downloads&diff=2637Downloads2015-06-15T15:51:43Z<p>AndreasFetzer: /* MITK Workbench */</p>
<hr />
<div>__TOC__<br />
<br />
<br />
== MITK applications ==<br />
<br />
<br />
=== MITK Workbench ===<br />
<br />
MITK releases include binary installers for Linux, Mac OS, and Windows. Please note these installers contain only the example application, not a SDK.<br />
<br />
If you have problems running the application on Windows, please install the Microsoft Redistributable Packages for VS 2008 ([http://www.microsoft.com/downloads/details.aspx?familyid=A5C84275-3B97-4AB7-A40D-3802B2AF5FC2&displaylang=en 32bit] / [http://www.microsoft.com/downloads/details.aspx?familyid=BA9257CA-337F-4B40-8C14-157CFDFFEE4E&displaylang=en 64bit])<br />
<br />
{|class="wikitable" width=100% style="background-color:#ffffff;"<br />
| '''MITK Release'''<br />
| '''Sources'''<br />
| '''Installers'''<br />
| '''Documentation'''<br />
| '''Supported Platforms'''<br />
|-<br />
| [[MITK_ReleaseNotes_2015.05|2015.05.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2015.05/MITK-2015.05.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2015.05.0 v2015.05.0]<br />
| [http://www.mitk.org/download/releases/MITK-2015.05/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2015.05/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2014.10/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2015.05/ Doxygen]<br />[http://docs.mitk.org/2015.05/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2015.05/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK_ReleaseNotes_2014.10|2014.10.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2014.10/MITK-2014.10.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2014.10.0 v2014.10.0]<br />
| [http://www.mitk.org/download/releases/MITK-2014.10/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2014.10/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2014.10/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2014.10/ Doxygen]<br />[http://docs.mitk.org/2014.10/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2014.10/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2014-03|2014.03.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2014.03/MITK-2014.03.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2014.03.0 v2014.03.0] <br />
| [http://www.mitk.org/download/releases/MITK-2014.03/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2014.03/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2014.03/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2014.03/ Doxygen]<br />[http://docs.mitk.org/2014.03/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2014.03/SupportedPlatformsPage.html Supported Platforms] <br />
|}<br />
<br />
<br />
==== Previous releases ====<br />
<br />
{|class="mw-collapsible mw-collapsed wikitable" width=100% style="background-color:#ffffff;"<br />
| '''MITK Release'''<br />
| '''Sources'''<br />
| '''Installers'''<br />
| '''Documentation'''<br />
| '''Supported Platforms'''<br />
|-<br />
| [[MITK-ReleaseNotes-2013-12|2013.12.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.12/MITK-2013.12.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.12.0 v2013.12.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.12/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.12/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.12/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.12/ Doxygen]<br />[http://docs.mitk.org/2013.12/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.12/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-09|2013.09.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.09/MITK-2013.09.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.09.0 v2013.09.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.09/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.09/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.09/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.09/ Doxygen]<br />[http://docs.mitk.org/2013.09/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.09/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-06|2013.06.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.06/MITK-2013.06.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.06.0 v2013.06.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.06/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.06/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.06/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.06/ Doxygen]<br />[http://docs.mitk.org/2013.06/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.06/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-03-2|2013.03.2]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.03/MITK-2013.03.2-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.03.2 v2013.03.2] <br />
| not available <br />
| [http://docs.mitk.org/2013.03.2/ Doxygen]<br />[http://docs.mitk.org/2013.03.2/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.03.2/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-03|2013.03.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.03/MITK-2013.03.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.03.0 v2013.03.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.03/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.03/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.03/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.03/ Doxygen]<br />[http://docs.mitk.org/2013.03/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.03/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2012-12|2012.12.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2012.12/MITK-2012.12.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2012.12.0 v2012.12.0] <br />
| [http://www.mitk.org/download/releases/MITK-2012.12/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2012.12/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2012.12/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2012.12/ Doxygen]<br />[http://docs.mitk.org/2012.12/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2012.12/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2012-09|2012.09.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2012.09/MITK-2012.09.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2012.09.0 v2012.09.0] <br />
| [http://www.mitk.org/download/releases/MITK-2012.09/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2012.09/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2012.09/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2012.09/ Doxygen]<br />[http://docs.mitk.org/2012.09/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2012.09/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2012-06|2012.06.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2012.06/MITK-2012.06.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2012.06.0 v2012.06.0] <br />
| [http://www.mitk.org/download/releases/MITK-2012.06/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2012.06/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2012.06/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2012.06/ Doxygen]<br />[http://docs.mitk.org/2012.06/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2012.06/SupportedPlatformsPage.html Supported Platforms] <br />
|}<br />
<br />
<br />
Some older releases can be found at the [http://sourceforge.net/projects/mitk/ MITK SourceForge project site.]<br />
<br />
Nightly built installers can be found [http://www.mitk.org/download/nightly-builds here]. Caution! These are automatically generated ''untested developer versions''!<br />
<br />
=== MITK Diffusion ===<br />
<br />
MITK Diffusion is an application designed around the workflows for the analysis of diffusion MRI data. As such it is a binary release which expands the functionality available in the MITK Workbench.<br />
<br />
The current release '''2014.10.02''' is available here.<br />
<br />
{| class="wikitable" width=100% style="background-color:#ffffff;"<br />
! Windows <br />
| Vista, Windows 7 <br />
| [http://www.mitk.org/download/releases/MITK-Diffusion-2014.10/Windows/MITK-Diffusion-2014.10.02-win64.exe MS Windows (64 bit) installer] <br />
|-<br />
! Linux <br />
| Ubuntu 14.04 and newer <br />
| [http://www.mitk.org/download/releases/MITK-Diffusion-2014.10/Linux/MITK-Diffusion-2014.10.02-linux64.tar.gz Ubuntu (64 bit), tar.gz archive] <br />
|-<br />
! Mac OS X <br />
| OS X 10.8 and newer <br />
| [http://www.mitk.org/download/releases/MITK-Diffusion-2014.10/MacOS/MITK-Diffusion-2014.10.02-mac64.dmg 10.8 OS X disk image] <br />
|}<br />
<br />
For older releases or more information regarding MITK Diffusion visit our [[DiffusionImaging|MITK Diffusion site]].<br />
<br />
<br />
=== MITK 3M3 ===<br />
<br />
There is also a binary installer for the [http://www.mint-medical.de/productssolutions/mitk3m3/mitk3m3/ '''MITK 3M3'''] image analysis application which is based on MITK.<br />
<br />
<br />
=== Special Releases ===<br />
Recent releases of special applications can be found [http://www.mitk.org/download/releases/ here]. <br />
<br />
<br />
== MITK Source Code ==<br />
We recommend to use the source code archive from the latest MITK release (see table above) or to check out the corresponding git tag.<br />
<br />
If you need bug fixes or features which are not yet included in a MITK release, you can also clone the Git repository at:<br />
<br />
<pre>http://git.mitk.org/MITK.git</pre><br />
<br />
<br />
Before updating to a current development version, you can check the status of the [http://cdash.mitk.org/index.php?project=MITK MITK continuous integration system].<br />
<br />
For details about Git, see also [[MitkGit| Mitk & Git]].<br />
<br />
<br />
== Getting Started ==<br />
<br />
Build instructions are available in the [http://docs.mitk.org/nightly/BuildInstructionsPage.html MITK documentation]. Build requirements are listed [http://www.mitk.org/wiki/Build_requirements here]. See the [[Documentation]] page for further links.<br />
<br />
<br />
== Plugin Generator ==<br />
<br />
The MITK Plugin Generator is a command line tool which can generate CTK-style MITK plug-ins and optionally a whole CMake project to boostrap the process of setting up a MITK-based project.<br />
<br />
For more information, please see the [http://docs.mitk.org/nightly/HowToNewProject.html Documentation].<br />
<br />
The latest version of the MITK Plugin Generator is included in the MITK code repository<br />
<br />
'''Previous releases:'''<br />
<br />
{|class="mw-collapsible mw-collapsed wikitable" width=100% style="background-color:#ffffff;"<br />
| '''Version''' <br />
| '''Release date''' <br />
| '''Dependencies''' <br />
| '''Download''' <br />
| '''Notes''' <br />
| '''MITK Release''' <br />
|-<br />
| style="text-align:center;" colspan="6" | Linux Binaries<br />
|-<br />
| 1.4.0 <br />
| 24-Feb-2012 <br />
| Qt 4.6.2 <br />
| [[Media:Download$MITKPluginGenerator-1.4.0-Linux.tar.gz|MITKPluginGenerator-1.4.0-Linux.tar.gz]] <br />
| Build on Ubuntu 11.04 x64 <br />
| For 2012.06 <br />
|-<br />
| 1.3.0 <br />
| 26-Jan-2012 <br />
| Qt 4.6.2 <br />
| [[Media:Download$MITKPluginGenerator-1.3.0-Linux.tar.gz|MITKPluginGenerator-1.3.0-Linux.tar.gz]] <br />
| Build on Ubuntu 11.04 x64 <br />
| For 2012.02 <br />
|-<br />
| style="text-align:center;" colspan="6" |Windows binaries<br />
|-<br />
| 1.4.0 <br />
| 24-Feb-2012 <br />
| - <br />
| [[Media:Download$MITKPluginGenerator-1.4.0-win32.zip|MITKPluginGenerator-1.4.0-win32.zip]] <br />
| x32 binary <br />
| For 2012.06 <br />
|-<br />
| 1.3.0 <br />
| 26-Jan-2012 <br />
| - <br />
| [[Media:Download$MITKPluginGenerator-1.3.0-win32.zip|MITKPluginGenerator-1.3.0-win32.zip]] <br />
| x32 binary <br />
| For 2012.02 <br />
|}<br />
<br />
<br />
Sources:<br />
<br />
If the above binary downloads are not compatible with your system, you can download the Plugin Generator sources and build it yourself (basic CMake knowledge required).<br />
<br />
* [[Media:Download$MITKPluginGenerator-1.4.0-src-unix.tar.gz|MITKPluginGenerator-1.4.0-src-unix.tar.gz]] (UNIX style line endings)<br />
<br />
*[[Media:Download$MITKPluginGenerator-1.4.0-src-win32.zip|MITKPluginGenerator-1.4.0-src-win32.zip]] (Windows style line endings)</div>AndreasFetzerhttp://mitk.org/w/index.php?title=Downloads&diff=2636Downloads2015-06-12T20:58:52Z<p>AndreasFetzer: </p>
<hr />
<div>__TOC__<br />
<br />
<br />
== MITK applications ==<br />
<br />
<br />
=== MITK Workbench ===<br />
<br />
MITK releases include binary installers for Linux, Mac OS, and Windows. Please note these installers contain only the example application, not a SDK.<br />
<br />
If you have problems running the application on Windows, please install the Microsoft Redistributable Packages for VS 2008 ([http://www.microsoft.com/downloads/details.aspx?familyid=A5C84275-3B97-4AB7-A40D-3802B2AF5FC2&displaylang=en 32bit] / [http://www.microsoft.com/downloads/details.aspx?familyid=BA9257CA-337F-4B40-8C14-157CFDFFEE4E&displaylang=en 64bit])<br />
<br />
{|class="wikitable" width=100% style="background-color:#ffffff;"<br />
| '''MITK Release'''<br />
| '''Sources'''<br />
| '''Installers'''<br />
| '''Documentation'''<br />
| '''Supported Platforms'''<br />
|-<br />
| [[MITK_ReleaseNotes_2014.10|2014.10.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2014.10/MITK-2014.10.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2014.10.0 v2014.10.0]<br />
| [http://www.mitk.org/download/releases/MITK-2014.10/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2014.10/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2014.10/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2014.10/ Doxygen]<br />[http://docs.mitk.org/2014.10/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2014.10/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2014-03|2014.03.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2014.03/MITK-2014.03.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2014.03.0 v2014.03.0] <br />
| [http://www.mitk.org/download/releases/MITK-2014.03/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2014.03/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2014.03/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2014.03/ Doxygen]<br />[http://docs.mitk.org/2014.03/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2014.03/SupportedPlatformsPage.html Supported Platforms] <br />
|}<br />
<br />
<br />
==== Previous releases ====<br />
<br />
{|class="mw-collapsible mw-collapsed wikitable" width=100% style="background-color:#ffffff;"<br />
| '''MITK Release'''<br />
| '''Sources'''<br />
| '''Installers'''<br />
| '''Documentation'''<br />
| '''Supported Platforms'''<br />
|-<br />
| [[MITK-ReleaseNotes-2013-12|2013.12.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.12/MITK-2013.12.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.12.0 v2013.12.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.12/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.12/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.12/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.12/ Doxygen]<br />[http://docs.mitk.org/2013.12/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.12/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-09|2013.09.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.09/MITK-2013.09.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.09.0 v2013.09.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.09/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.09/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.09/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.09/ Doxygen]<br />[http://docs.mitk.org/2013.09/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.09/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-06|2013.06.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.06/MITK-2013.06.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.06.0 v2013.06.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.06/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.06/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.06/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.06/ Doxygen]<br />[http://docs.mitk.org/2013.06/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.06/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-03-2|2013.03.2]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.03/MITK-2013.03.2-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.03.2 v2013.03.2] <br />
| not available <br />
| [http://docs.mitk.org/2013.03.2/ Doxygen]<br />[http://docs.mitk.org/2013.03.2/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.03.2/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-03|2013.03.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.03/MITK-2013.03.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.03.0 v2013.03.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.03/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.03/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.03/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.03/ Doxygen]<br />[http://docs.mitk.org/2013.03/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.03/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2012-12|2012.12.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2012.12/MITK-2012.12.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2012.12.0 v2012.12.0] <br />
| [http://www.mitk.org/download/releases/MITK-2012.12/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2012.12/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2012.12/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2012.12/ Doxygen]<br />[http://docs.mitk.org/2012.12/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2012.12/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2012-09|2012.09.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2012.09/MITK-2012.09.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2012.09.0 v2012.09.0] <br />
| [http://www.mitk.org/download/releases/MITK-2012.09/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2012.09/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2012.09/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2012.09/ Doxygen]<br />[http://docs.mitk.org/2012.09/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2012.09/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2012-06|2012.06.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2012.06/MITK-2012.06.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2012.06.0 v2012.06.0] <br />
| [http://www.mitk.org/download/releases/MITK-2012.06/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2012.06/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2012.06/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2012.06/ Doxygen]<br />[http://docs.mitk.org/2012.06/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2012.06/SupportedPlatformsPage.html Supported Platforms] <br />
|}<br />
<br />
<br />
Some older releases can be found at the [http://sourceforge.net/projects/mitk/ MITK SourceForge project site.]<br />
<br />
Nightly built installers can be found [http://www.mitk.org/download/nightly-builds here]. Caution! These are automatically generated ''untested developer versions''!<br />
<br />
=== MITK Diffusion ===<br />
<br />
MITK Diffusion is an application designed around the workflows for the analysis of diffusion MRI data. As such it is a binary release which expands the functionality available in the MITK Workbench.<br />
<br />
The current release '''2014.10.02''' is available here.<br />
<br />
{| class="wikitable" width=100% style="background-color:#ffffff;"<br />
! Windows <br />
| Vista, Windows 7 <br />
| [http://www.mitk.org/download/releases/MITK-Diffusion-2014.10/Windows/MITK-Diffusion-2014.10.02-win64.exe MS Windows (64 bit) installer] <br />
|-<br />
! Linux <br />
| Ubuntu 14.04 and newer <br />
| [http://www.mitk.org/download/releases/MITK-Diffusion-2014.10/Linux/MITK-Diffusion-2014.10.02-linux64.tar.gz Ubuntu (64 bit), tar.gz archive] <br />
|-<br />
! Mac OS X <br />
| OS X 10.8 and newer <br />
| [http://www.mitk.org/download/releases/MITK-Diffusion-2014.10/MacOS/MITK-Diffusion-2014.10.02-mac64.dmg 10.8 OS X disk image] <br />
|}<br />
<br />
For older releases or more information regarding MITK Diffusion visit our [[DiffusionImaging|MITK Diffusion site]].<br />
<br />
<br />
=== MITK 3M3 ===<br />
<br />
There is also a binary installer for the [http://www.mint-medical.de/productssolutions/mitk3m3/mitk3m3/ '''MITK 3M3'''] image analysis application which is based on MITK.<br />
<br />
<br />
=== Special Releases ===<br />
Recent releases of special applications can be found [http://www.mitk.org/download/releases/ here]. <br />
<br />
<br />
== MITK Source Code ==<br />
We recommend to use the source code archive from the latest MITK release (see table above) or to check out the corresponding git tag.<br />
<br />
If you need bug fixes or features which are not yet included in a MITK release, you can also clone the Git repository at:<br />
<br />
<pre>http://git.mitk.org/MITK.git</pre><br />
<br />
<br />
Before updating to a current development version, you can check the status of the [http://cdash.mitk.org/index.php?project=MITK MITK continuous integration system].<br />
<br />
For details about Git, see also [[MitkGit| Mitk & Git]].<br />
<br />
<br />
== Getting Started ==<br />
<br />
Build instructions are available in the [http://docs.mitk.org/nightly/BuildInstructionsPage.html MITK documentation]. Build requirements are listed [http://www.mitk.org/wiki/Build_requirements here]. See the [[Documentation]] page for further links.<br />
<br />
<br />
== Plugin Generator ==<br />
<br />
The MITK Plugin Generator is a command line tool which can generate CTK-style MITK plug-ins and optionally a whole CMake project to boostrap the process of setting up a MITK-based project.<br />
<br />
For more information, please see the [http://docs.mitk.org/nightly/HowToNewProject.html Documentation].<br />
<br />
The latest version of the MITK Plugin Generator is included in the MITK code repository<br />
<br />
'''Previous releases:'''<br />
<br />
{|class="mw-collapsible mw-collapsed wikitable" width=100% style="background-color:#ffffff;"<br />
| '''Version''' <br />
| '''Release date''' <br />
| '''Dependencies''' <br />
| '''Download''' <br />
| '''Notes''' <br />
| '''MITK Release''' <br />
|-<br />
| style="text-align:center;" colspan="6" | Linux Binaries<br />
|-<br />
| 1.4.0 <br />
| 24-Feb-2012 <br />
| Qt 4.6.2 <br />
| [[Media:Download$MITKPluginGenerator-1.4.0-Linux.tar.gz|MITKPluginGenerator-1.4.0-Linux.tar.gz]] <br />
| Build on Ubuntu 11.04 x64 <br />
| For 2012.06 <br />
|-<br />
| 1.3.0 <br />
| 26-Jan-2012 <br />
| Qt 4.6.2 <br />
| [[Media:Download$MITKPluginGenerator-1.3.0-Linux.tar.gz|MITKPluginGenerator-1.3.0-Linux.tar.gz]] <br />
| Build on Ubuntu 11.04 x64 <br />
| For 2012.02 <br />
|-<br />
| style="text-align:center;" colspan="6" |Windows binaries<br />
|-<br />
| 1.4.0 <br />
| 24-Feb-2012 <br />
| - <br />
| [[Media:Download$MITKPluginGenerator-1.4.0-win32.zip|MITKPluginGenerator-1.4.0-win32.zip]] <br />
| x32 binary <br />
| For 2012.06 <br />
|-<br />
| 1.3.0 <br />
| 26-Jan-2012 <br />
| - <br />
| [[Media:Download$MITKPluginGenerator-1.3.0-win32.zip|MITKPluginGenerator-1.3.0-win32.zip]] <br />
| x32 binary <br />
| For 2012.02 <br />
|}<br />
<br />
<br />
Sources:<br />
<br />
If the above binary downloads are not compatible with your system, you can download the Plugin Generator sources and build it yourself (basic CMake knowledge required).<br />
<br />
* [[Media:Download$MITKPluginGenerator-1.4.0-src-unix.tar.gz|MITKPluginGenerator-1.4.0-src-unix.tar.gz]] (UNIX style line endings)<br />
<br />
*[[Media:Download$MITKPluginGenerator-1.4.0-src-win32.zip|MITKPluginGenerator-1.4.0-src-win32.zip]] (Windows style line endings)</div>AndreasFetzerhttp://mitk.org/w/index.php?title=Downloads&diff=2626Downloads2015-06-03T16:19:34Z<p>AndreasFetzer: /* Plugin Generator */</p>
<hr />
<div>__TOC__<br />
<br />
<br />
== MITK applications ==<br />
<br />
<br />
=== MITK Workbench ===<br />
<br />
MITK releases include binary installers for Linux, Mac OS, and Windows. Please note these installers contain only the example application, not a SDK.<br />
<br />
If you have problems running the application on Windows, please install the Microsoft Redistributable Packages for VS 2008 ([http://www.microsoft.com/downloads/details.aspx?familyid=A5C84275-3B97-4AB7-A40D-3802B2AF5FC2&displaylang=en 32bit] / [http://www.microsoft.com/downloads/details.aspx?familyid=BA9257CA-337F-4B40-8C14-157CFDFFEE4E&displaylang=en 64bit])<br />
<br />
{|class="wikitable" width=100% style="background-color:#ffffff;"<br />
| '''MITK Release'''<br />
| '''Sources'''<br />
| '''Installers'''<br />
| '''Documentation'''<br />
| '''Supported Platforms'''<br />
|-<br />
| [[MITK_ReleaseNotes_2015.05|2015.05.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2015.05/MITK-2015.05.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2015.05.0 v2015.05.0]<br />
| [http://www.mitk.org/download/releases/MITK-2015.05/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2015.05/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2014.10/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2015.05/ Doxygen]<br />[http://docs.mitk.org/2015.05/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2015.05/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK_ReleaseNotes_2014.10|2014.10.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2014.10/MITK-2014.10.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2014.10.0 v2014.10.0]<br />
| [http://www.mitk.org/download/releases/MITK-2014.10/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2014.10/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2014.10/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2014.10/ Doxygen]<br />[http://docs.mitk.org/2014.10/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2014.10/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2014-03|2014.03.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2014.03/MITK-2014.03.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2014.03.0 v2014.03.0] <br />
| [http://www.mitk.org/download/releases/MITK-2014.03/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2014.03/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2014.03/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2014.03/ Doxygen]<br />[http://docs.mitk.org/2014.03/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2014.03/SupportedPlatformsPage.html Supported Platforms] <br />
|}<br />
<br />
<br />
==== Previous releases ====<br />
<br />
{|class="mw-collapsible mw-collapsed wikitable" width=100% style="background-color:#ffffff;"<br />
| '''MITK Release'''<br />
| '''Sources'''<br />
| '''Installers'''<br />
| '''Documentation'''<br />
| '''Supported Platforms'''<br />
|-<br />
| [[MITK-ReleaseNotes-2013-12|2013.12.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.12/MITK-2013.12.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.12.0 v2013.12.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.12/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.12/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.12/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.12/ Doxygen]<br />[http://docs.mitk.org/2013.12/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.12/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-09|2013.09.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.09/MITK-2013.09.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.09.0 v2013.09.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.09/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.09/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.09/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.09/ Doxygen]<br />[http://docs.mitk.org/2013.09/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.09/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-06|2013.06.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.06/MITK-2013.06.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.06.0 v2013.06.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.06/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.06/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.06/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.06/ Doxygen]<br />[http://docs.mitk.org/2013.06/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.06/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-03-2|2013.03.2]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.03/MITK-2013.03.2-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.03.2 v2013.03.2] <br />
| not available <br />
| [http://docs.mitk.org/2013.03.2/ Doxygen]<br />[http://docs.mitk.org/2013.03.2/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.03.2/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-03|2013.03.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.03/MITK-2013.03.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.03.0 v2013.03.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.03/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.03/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.03/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.03/ Doxygen]<br />[http://docs.mitk.org/2013.03/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.03/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2012-12|2012.12.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2012.12/MITK-2012.12.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2012.12.0 v2012.12.0] <br />
| [http://www.mitk.org/download/releases/MITK-2012.12/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2012.12/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2012.12/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2012.12/ Doxygen]<br />[http://docs.mitk.org/2012.12/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2012.12/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2012-09|2012.09.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2012.09/MITK-2012.09.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2012.09.0 v2012.09.0] <br />
| [http://www.mitk.org/download/releases/MITK-2012.09/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2012.09/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2012.09/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2012.09/ Doxygen]<br />[http://docs.mitk.org/2012.09/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2012.09/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2012-06|2012.06.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2012.06/MITK-2012.06.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2012.06.0 v2012.06.0] <br />
| [http://www.mitk.org/download/releases/MITK-2012.06/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2012.06/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2012.06/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2012.06/ Doxygen]<br />[http://docs.mitk.org/2012.06/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2012.06/SupportedPlatformsPage.html Supported Platforms] <br />
|}<br />
<br />
<br />
Some older releases can be found at the [http://sourceforge.net/projects/mitk/ MITK SourceForge project site.]<br />
<br />
Nightly built installers can be found [http://www.mitk.org/download/nightly-builds here]. Caution! These are automatically generated ''untested developer versions''!<br />
<br />
=== MITK Diffusion ===<br />
<br />
MITK Diffusion is an application designed around the workflows for the analysis of diffusion MRI data. As such it is a binary release which expands the functionality available in the MITK Workbench.<br />
<br />
The current release '''2014.10.02''' is available here.<br />
<br />
{| class="wikitable" width=100% style="background-color:#ffffff;"<br />
! Windows <br />
| Vista, Windows 7 <br />
| [http://www.mitk.org/download/releases/MITK-Diffusion-2014.10/Windows/MITK-Diffusion-2014.10.02-win64.exe MS Windows (64 bit) installer] <br />
|-<br />
! Linux <br />
| Ubuntu 14.04 and newer <br />
| [http://www.mitk.org/download/releases/MITK-Diffusion-2014.10/Linux/MITK-Diffusion-2014.10.02-linux64.tar.gz Ubuntu (64 bit), tar.gz archive] <br />
|-<br />
! Mac OS X <br />
| OS X 10.8 and newer <br />
| [http://www.mitk.org/download/releases/MITK-Diffusion-2014.10/MacOS/MITK-Diffusion-2014.10.02-mac64.dmg 10.8 OS X disk image] <br />
|}<br />
<br />
For older releases or more information regarding MITK Diffusion visit our [[DiffusionImaging|MITK Diffusion site]].<br />
<br />
<br />
=== MITK 3M3 ===<br />
<br />
There is also a binary installer for the [http://www.mint-medical.de/productssolutions/mitk3m3/mitk3m3/ '''MITK 3M3'''] image analysis application which is based on MITK.<br />
<br />
<br />
=== Special Releases ===<br />
Recent releases of special applications can be found [http://www.mitk.org/download/releases/ here]. <br />
<br />
<br />
== MITK Source Code ==<br />
We recommend to use the source code archive from the latest MITK release (see table above) or to check out the corresponding git tag.<br />
<br />
If you need bug fixes or features which are not yet included in a MITK release, you can also clone the Git repository at:<br />
<br />
<pre>http://git.mitk.org/MITK.git</pre><br />
<br />
<br />
Before updating to a current development version, you can check the status of the [http://cdash.mitk.org/index.php?project=MITK MITK continuous integration system].<br />
<br />
For details about Git, see also [[MitkGit| Mitk & Git]].<br />
<br />
<br />
== Getting Started ==<br />
<br />
Build instructions are available in the [http://docs.mitk.org/nightly/BuildInstructionsPage.html MITK documentation]. Build requirements are listed [http://www.mitk.org/wiki/Build_requirements here]. See the [[Documentation]] page for further links.<br />
<br />
<br />
== Plugin Generator ==<br />
<br />
The MITK Plugin Generator is a command line tool which can generate CTK-style MITK plug-ins and optionally a whole CMake project to boostrap the process of setting up a MITK-based project.<br />
<br />
For more information, please see the [http://docs.mitk.org/nightly/HowToNewProject.html Documentation].<br />
<br />
The latest version of the MITK Plugin Generator is included in the MITK code repository<br />
<br />
'''Previous releases:'''<br />
<br />
{|class="mw-collapsible mw-collapsed wikitable" width=100% style="background-color:#ffffff;"<br />
| '''Version''' <br />
| '''Release date''' <br />
| '''Dependencies''' <br />
| '''Download''' <br />
| '''Notes''' <br />
| '''MITK Release''' <br />
|-<br />
| style="text-align:center;" colspan="6" | Linux Binaries<br />
|-<br />
| 1.4.0 <br />
| 24-Feb-2012 <br />
| Qt 4.6.2 <br />
| [[Media:Download$MITKPluginGenerator-1.4.0-Linux.tar.gz|MITKPluginGenerator-1.4.0-Linux.tar.gz]] <br />
| Build on Ubuntu 11.04 x64 <br />
| For 2012.06 <br />
|-<br />
| 1.3.0 <br />
| 26-Jan-2012 <br />
| Qt 4.6.2 <br />
| [[Media:Download$MITKPluginGenerator-1.3.0-Linux.tar.gz|MITKPluginGenerator-1.3.0-Linux.tar.gz]] <br />
| Build on Ubuntu 11.04 x64 <br />
| For 2012.02 <br />
|-<br />
| style="text-align:center;" colspan="6" |Windows binaries<br />
|-<br />
| 1.4.0 <br />
| 24-Feb-2012 <br />
| - <br />
| [[Media:Download$MITKPluginGenerator-1.4.0-win32.zip|MITKPluginGenerator-1.4.0-win32.zip]] <br />
| x32 binary <br />
| For 2012.06 <br />
|-<br />
| 1.3.0 <br />
| 26-Jan-2012 <br />
| - <br />
| [[Media:Download$MITKPluginGenerator-1.3.0-win32.zip|MITKPluginGenerator-1.3.0-win32.zip]] <br />
| x32 binary <br />
| For 2012.02 <br />
|}<br />
<br />
<br />
Sources:<br />
<br />
If the above binary downloads are not compatible with your system, you can download the Plugin Generator sources and build it yourself (basic CMake knowledge required).<br />
<br />
* [[Media:Download$MITKPluginGenerator-1.4.0-src-unix.tar.gz|MITKPluginGenerator-1.4.0-src-unix.tar.gz]] (UNIX style line endings)<br />
<br />
*[[Media:Download$MITKPluginGenerator-1.4.0-src-win32.zip|MITKPluginGenerator-1.4.0-src-win32.zip]] (Windows style line endings)</div>AndreasFetzerhttp://mitk.org/w/index.php?title=Downloads&diff=2625Downloads2015-06-03T14:56:39Z<p>AndreasFetzer: </p>
<hr />
<div>__TOC__<br />
<br />
<br />
== MITK applications ==<br />
<br />
<br />
=== MITK Workbench ===<br />
<br />
MITK releases include binary installers for Linux, Mac OS, and Windows. Please note these installers contain only the example application, not a SDK.<br />
<br />
If you have problems running the application on Windows, please install the Microsoft Redistributable Packages for VS 2008 ([http://www.microsoft.com/downloads/details.aspx?familyid=A5C84275-3B97-4AB7-A40D-3802B2AF5FC2&displaylang=en 32bit] / [http://www.microsoft.com/downloads/details.aspx?familyid=BA9257CA-337F-4B40-8C14-157CFDFFEE4E&displaylang=en 64bit])<br />
<br />
{|class="wikitable" width=100% style="background-color:#ffffff;"<br />
| '''MITK Release'''<br />
| '''Sources'''<br />
| '''Installers'''<br />
| '''Documentation'''<br />
| '''Supported Platforms'''<br />
|-<br />
| [[MITK_ReleaseNotes_2015.05|2015.05.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2015.05/MITK-2015.05.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2015.05.0 v2015.05.0]<br />
| [http://www.mitk.org/download/releases/MITK-2015.05/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2015.05/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2014.10/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2015.05/ Doxygen]<br />[http://docs.mitk.org/2015.05/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2015.05/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK_ReleaseNotes_2014.10|2014.10.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2014.10/MITK-2014.10.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2014.10.0 v2014.10.0]<br />
| [http://www.mitk.org/download/releases/MITK-2014.10/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2014.10/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2014.10/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2014.10/ Doxygen]<br />[http://docs.mitk.org/2014.10/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2014.10/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2014-03|2014.03.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2014.03/MITK-2014.03.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2014.03.0 v2014.03.0] <br />
| [http://www.mitk.org/download/releases/MITK-2014.03/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2014.03/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2014.03/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2014.03/ Doxygen]<br />[http://docs.mitk.org/2014.03/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2014.03/SupportedPlatformsPage.html Supported Platforms] <br />
|}<br />
<br />
<br />
==== Previous releases ====<br />
<br />
{|class="mw-collapsible mw-collapsed wikitable" width=100% style="background-color:#ffffff;"<br />
| '''MITK Release'''<br />
| '''Sources'''<br />
| '''Installers'''<br />
| '''Documentation'''<br />
| '''Supported Platforms'''<br />
|-<br />
| [[MITK-ReleaseNotes-2013-12|2013.12.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.12/MITK-2013.12.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.12.0 v2013.12.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.12/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.12/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.12/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.12/ Doxygen]<br />[http://docs.mitk.org/2013.12/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.12/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-09|2013.09.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.09/MITK-2013.09.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.09.0 v2013.09.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.09/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.09/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.09/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.09/ Doxygen]<br />[http://docs.mitk.org/2013.09/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.09/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-06|2013.06.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.06/MITK-2013.06.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.06.0 v2013.06.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.06/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.06/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.06/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.06/ Doxygen]<br />[http://docs.mitk.org/2013.06/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.06/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-03-2|2013.03.2]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.03/MITK-2013.03.2-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.03.2 v2013.03.2] <br />
| not available <br />
| [http://docs.mitk.org/2013.03.2/ Doxygen]<br />[http://docs.mitk.org/2013.03.2/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.03.2/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-03|2013.03.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.03/MITK-2013.03.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.03.0 v2013.03.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.03/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.03/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.03/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.03/ Doxygen]<br />[http://docs.mitk.org/2013.03/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.03/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2012-12|2012.12.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2012.12/MITK-2012.12.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2012.12.0 v2012.12.0] <br />
| [http://www.mitk.org/download/releases/MITK-2012.12/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2012.12/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2012.12/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2012.12/ Doxygen]<br />[http://docs.mitk.org/2012.12/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2012.12/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2012-09|2012.09.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2012.09/MITK-2012.09.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2012.09.0 v2012.09.0] <br />
| [http://www.mitk.org/download/releases/MITK-2012.09/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2012.09/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2012.09/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2012.09/ Doxygen]<br />[http://docs.mitk.org/2012.09/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2012.09/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2012-06|2012.06.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2012.06/MITK-2012.06.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2012.06.0 v2012.06.0] <br />
| [http://www.mitk.org/download/releases/MITK-2012.06/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2012.06/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2012.06/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2012.06/ Doxygen]<br />[http://docs.mitk.org/2012.06/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2012.06/SupportedPlatformsPage.html Supported Platforms] <br />
|}<br />
<br />
<br />
Some older releases can be found at the [http://sourceforge.net/projects/mitk/ MITK SourceForge project site.]<br />
<br />
Nightly built installers can be found [http://www.mitk.org/download/nightly-builds here]. Caution! These are automatically generated ''untested developer versions''!<br />
<br />
=== MITK Diffusion ===<br />
<br />
MITK Diffusion is an application designed around the workflows for the analysis of diffusion MRI data. As such it is a binary release which expands the functionality available in the MITK Workbench.<br />
<br />
The current release '''2014.10.02''' is available here.<br />
<br />
{| class="wikitable" width=100% style="background-color:#ffffff;"<br />
! Windows <br />
| Vista, Windows 7 <br />
| [http://www.mitk.org/download/releases/MITK-Diffusion-2014.10/Windows/MITK-Diffusion-2014.10.02-win64.exe MS Windows (64 bit) installer] <br />
|-<br />
! Linux <br />
| Ubuntu 14.04 and newer <br />
| [http://www.mitk.org/download/releases/MITK-Diffusion-2014.10/Linux/MITK-Diffusion-2014.10.02-linux64.tar.gz Ubuntu (64 bit), tar.gz archive] <br />
|-<br />
! Mac OS X <br />
| OS X 10.8 and newer <br />
| [http://www.mitk.org/download/releases/MITK-Diffusion-2014.10/MacOS/MITK-Diffusion-2014.10.02-mac64.dmg 10.8 OS X disk image] <br />
|}<br />
<br />
For older releases or more information regarding MITK Diffusion visit our [[DiffusionImaging|MITK Diffusion site]].<br />
<br />
<br />
=== MITK 3M3 ===<br />
<br />
There is also a binary installer for the [http://www.mint-medical.de/productssolutions/mitk3m3/mitk3m3/ '''MITK 3M3'''] image analysis application which is based on MITK.<br />
<br />
<br />
=== Special Releases ===<br />
Recent releases of special applications can be found [http://www.mitk.org/download/releases/ here]. <br />
<br />
<br />
== MITK Source Code ==<br />
We recommend to use the source code archive from the latest MITK release (see table above) or to check out the corresponding git tag.<br />
<br />
If you need bug fixes or features which are not yet included in a MITK release, you can also clone the Git repository at:<br />
<br />
<pre>http://git.mitk.org/MITK.git</pre><br />
<br />
<br />
Before updating to a current development version, you can check the status of the [http://cdash.mitk.org/index.php?project=MITK MITK continuous integration system].<br />
<br />
For details about Git, see also [[MitkGit| Mitk & Git]].<br />
<br />
<br />
== Getting Started ==<br />
<br />
Build instructions are available in the [http://docs.mitk.org/nightly/BuildInstructionsPage.html MITK documentation]. Build requirements are listed [http://www.mitk.org/wiki/Build_requirements here]. See the [[Documentation]] page for further links.<br />
<br />
<br />
== Plugin Generator ==<br />
<br />
The MITK Plugin Generator is a command line tool which can generate CTK-style MITK plug-ins and optionally a whole CMake project to boostrap the process of setting up a MITK-based project.<br />
<br />
For more information, please see the [http://docs.mitk.org/nightly/HowToNewProject.html Documentation].<br />
<br />
{|class="mw-collapsible mw-collapsed wikitable" width=100% style="background-color:#ffffff;"<br />
<br />
Linux binaries:<br />
{| class="wikitable" width=100% style="background-color:#ffffff;"<br />
| '''Version''' <br />
| '''Release date''' <br />
| '''Dependencies''' <br />
| '''Download''' <br />
| '''Notes''' <br />
| '''MITK Release''' <br />
|-<br />
| 1.4.0 <br />
| 24-Feb-2012 <br />
| Qt 4.6.2 <br />
| [[Media:Download$MITKPluginGenerator-1.4.0-Linux.tar.gz|MITKPluginGenerator-1.4.0-Linux.tar.gz]] <br />
| Build on Ubuntu 11.04 x64 <br />
| For 2012.06 <br />
|-<br />
| 1.3.0 <br />
| 26-Jan-2012 <br />
| Qt 4.6.2 <br />
| [[Media:Download$MITKPluginGenerator-1.3.0-Linux.tar.gz|MITKPluginGenerator-1.3.0-Linux.tar.gz]] <br />
| Build on Ubuntu 11.04 x64 <br />
| For 2012.02 <br />
|}<br />
<br />
Windows binaries:<br />
{| class="wikitable" width=100% style="background-color:#ffffff;"<br />
| '''Version''' <br />
| '''Release date''' <br />
| '''Dependencies''' <br />
| '''Download''' <br />
| '''Notes''' <br />
| '''MITK Release''' <br />
|-<br />
| 1.4.0 <br />
| 24-Feb-2012 <br />
| - <br />
| [[Media:Download$MITKPluginGenerator-1.4.0-win32.zip|MITKPluginGenerator-1.4.0-win32.zip]] <br />
| x32 binary <br />
| For 2012.06 <br />
|-<br />
| 1.3.0 <br />
| 26-Jan-2012 <br />
| - <br />
| [[Media:Download$MITKPluginGenerator-1.3.0-win32.zip|MITKPluginGenerator-1.3.0-win32.zip]] <br />
| x32 binary <br />
| For 2012.02 <br />
|}<br />
<br />
<br />
Sources:<br />
<br />
If the above binary downloads are not compatible with your system, you can download the Plugin Generator sources and build it yourself (basic CMake knowledge required).<br />
<br />
* [[Media:Download$MITKPluginGenerator-1.4.0-src-unix.tar.gz|MITKPluginGenerator-1.4.0-src-unix.tar.gz]] (UNIX style line endings)<br />
<br />
*[[Media:Download$MITKPluginGenerator-1.4.0-src-win32.zip|MITKPluginGenerator-1.4.0-src-win32.zip]] (Windows style line endings)</div>AndreasFetzerhttp://mitk.org/w/index.php?title=Downloads&diff=2624Downloads2015-06-03T14:53:39Z<p>AndreasFetzer: /* MITK Workbench */</p>
<hr />
<div>__TOC__<br />
<br />
<br />
== MITK applications ==<br />
<br />
<br />
=== MITK Workbench ===<br />
<br />
MITK releases include binary installers for Linux, Mac OS, and Windows. Please note these installers contain only the example application, not a SDK.<br />
<br />
If you have problems running the application on Windows, please install the Microsoft Redistributable Packages for VS 2008 ([http://www.microsoft.com/downloads/details.aspx?familyid=A5C84275-3B97-4AB7-A40D-3802B2AF5FC2&displaylang=en 32bit] / [http://www.microsoft.com/downloads/details.aspx?familyid=BA9257CA-337F-4B40-8C14-157CFDFFEE4E&displaylang=en 64bit])<br />
<br />
{|class="wikitable" width=100% style="background-color:#ffffff;"<br />
| '''MITK Release'''<br />
| '''Sources'''<br />
| '''Installers'''<br />
| '''Documentation'''<br />
| '''Supported Platforms'''<br />
|-<br />
| [[MITK_ReleaseNotes_2015.05|2015.05.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2015.05/MITK-2015.05.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2015.05.0 v2015.05.0]<br />
| [http://www.mitk.org/download/releases/MITK-2015.05/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2015.05/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2014.10/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2015.05/ Doxygen]<br />[http://docs.mitk.org/2015.05/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2015.05/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK_ReleaseNotes_2014.10|2014.10.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2014.10/MITK-2014.10.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2014.10.0 v2014.10.0]<br />
| [http://www.mitk.org/download/releases/MITK-2014.10/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2014.10/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2014.10/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2014.10/ Doxygen]<br />[http://docs.mitk.org/2014.10/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2014.10/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2014-03|2014.03.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2014.03/MITK-2014.03.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2014.03.0 v2014.03.0] <br />
| [http://www.mitk.org/download/releases/MITK-2014.03/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2014.03/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2014.03/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2014.03/ Doxygen]<br />[http://docs.mitk.org/2014.03/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2014.03/SupportedPlatformsPage.html Supported Platforms] <br />
|}<br />
<br />
<br />
==== Previous releases ====<br />
<br />
{|class="mw-collapsible mw-collapsed wikitable" width=100% style="background-color:#ffffff;"<br />
| '''MITK Release'''<br />
| '''Sources'''<br />
| '''Installers'''<br />
| '''Documentation'''<br />
| '''Supported Platforms'''<br />
|-<br />
| [[MITK-ReleaseNotes-2013-12|2013.12.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.12/MITK-2013.12.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.12.0 v2013.12.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.12/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.12/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.12/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.12/ Doxygen]<br />[http://docs.mitk.org/2013.12/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.12/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-09|2013.09.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.09/MITK-2013.09.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.09.0 v2013.09.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.09/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.09/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.09/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.09/ Doxygen]<br />[http://docs.mitk.org/2013.09/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.09/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-06|2013.06.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.06/MITK-2013.06.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.06.0 v2013.06.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.06/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.06/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.06/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.06/ Doxygen]<br />[http://docs.mitk.org/2013.06/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.06/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-03-2|2013.03.2]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.03/MITK-2013.03.2-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.03.2 v2013.03.2] <br />
| not available <br />
| [http://docs.mitk.org/2013.03.2/ Doxygen]<br />[http://docs.mitk.org/2013.03.2/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.03.2/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-03|2013.03.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.03/MITK-2013.03.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.03.0 v2013.03.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.03/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.03/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.03/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.03/ Doxygen]<br />[http://docs.mitk.org/2013.03/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.03/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2012-12|2012.12.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2012.12/MITK-2012.12.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2012.12.0 v2012.12.0] <br />
| [http://www.mitk.org/download/releases/MITK-2012.12/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2012.12/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2012.12/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2012.12/ Doxygen]<br />[http://docs.mitk.org/2012.12/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2012.12/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2012-09|2012.09.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2012.09/MITK-2012.09.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2012.09.0 v2012.09.0] <br />
| [http://www.mitk.org/download/releases/MITK-2012.09/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2012.09/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2012.09/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2012.09/ Doxygen]<br />[http://docs.mitk.org/2012.09/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2012.09/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2012-06|2012.06.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2012.06/MITK-2012.06.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2012.06.0 v2012.06.0] <br />
| [http://www.mitk.org/download/releases/MITK-2012.06/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2012.06/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2012.06/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2012.06/ Doxygen]<br />[http://docs.mitk.org/2012.06/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2012.06/SupportedPlatformsPage.html Supported Platforms] <br />
|}<br />
<br />
<br />
Some older releases can be found at the [http://sourceforge.net/projects/mitk/ MITK SourceForge project site.]<br />
<br />
Nightly built installers can be found [http://www.mitk.org/download/nightly-builds here]. Caution! These are automatically generated ''untested developer versions''!<br />
<br />
=== MITK Diffusion ===<br />
<br />
MITK Diffusion is an application designed around the workflows for the analysis of diffusion MRI data. As such it is a binary release which expands the functionality available in the MITK Workbench.<br />
<br />
The current release '''2014.10.02''' is available here.<br />
<br />
{| class="wikitable" width=100% style="background-color:#ffffff;"<br />
! Windows <br />
| Vista, Windows 7 <br />
| [http://www.mitk.org/download/releases/MITK-Diffusion-2014.10/Windows/MITK-Diffusion-2014.10.02-win64.exe MS Windows (64 bit) installer] <br />
|-<br />
! Linux <br />
| Ubuntu 14.04 and newer <br />
| [http://www.mitk.org/download/releases/MITK-Diffusion-2014.10/Linux/MITK-Diffusion-2014.10.02-linux64.tar.gz Ubuntu (64 bit), tar.gz archive] <br />
|-<br />
! Mac OS X <br />
| OS X 10.8 and newer <br />
| [http://www.mitk.org/download/releases/MITK-Diffusion-2014.10/MacOS/MITK-Diffusion-2014.10.02-mac64.dmg 10.8 OS X disk image] <br />
|}<br />
<br />
For older releases or more information regarding MITK Diffusion visit our [[DiffusionImaging|MITK Diffusion site]].<br />
<br />
<br />
=== MITK 3M3 ===<br />
<br />
There is also a binary installer for the [http://www.mint-medical.de/productssolutions/mitk3m3/mitk3m3/ '''MITK 3M3'''] image analysis application which is based on MITK.<br />
<br />
<br />
=== Special Releases ===<br />
Recent releases of special applications can be found [http://www.mitk.org/download/releases/ here]. <br />
<br />
<br />
== MITK Source Code ==<br />
We recommend to use the source code archive from the latest MITK release (see table above) or to check out the corresponding git tag.<br />
<br />
If you need bug fixes or features which are not yet included in a MITK release, you can also clone the Git repository at:<br />
<br />
<pre>http://git.mitk.org/MITK.git</pre><br />
<br />
<br />
Before updating to a current development version, you can check the status of the [http://cdash.mitk.org/index.php?project=MITK MITK continuous integration system].<br />
<br />
For details about Git, see also [[MitkGit| Mitk & Git]].<br />
<br />
<br />
== Getting Started ==<br />
<br />
Build instructions are available in the [http://docs.mitk.org/nightly/BuildInstructionsPage.html MITK documentation]. Build requirements are listed [http://www.mitk.org/wiki/Build_requirements here]. See the [[Documentation]] page for further links.<br />
<br />
<br />
== Plugin Generator ==<br />
<br />
The MITK Plugin Generator is a command line tool which can generate CTK-style MITK plug-ins and optionally a whole CMake project to boostrap the process of setting up a MITK-based project.<br />
<br />
For more information, please see the [http://docs.mitk.org/nightly/HowToNewProject.html Documentation].<br />
<br />
Linux binaries:<br />
{| class="wikitable" width=100% style="background-color:#ffffff;"<br />
| '''Version''' <br />
| '''Release date''' <br />
| '''Dependencies''' <br />
| '''Download''' <br />
| '''Notes''' <br />
| '''MITK Release''' <br />
|-<br />
| 1.4.0 <br />
| 24-Feb-2012 <br />
| Qt 4.6.2 <br />
| [[Media:Download$MITKPluginGenerator-1.4.0-Linux.tar.gz|MITKPluginGenerator-1.4.0-Linux.tar.gz]] <br />
| Build on Ubuntu 11.04 x64 <br />
| For 2012.06 <br />
|-<br />
| 1.3.0 <br />
| 26-Jan-2012 <br />
| Qt 4.6.2 <br />
| [[Media:Download$MITKPluginGenerator-1.3.0-Linux.tar.gz|MITKPluginGenerator-1.3.0-Linux.tar.gz]] <br />
| Build on Ubuntu 11.04 x64 <br />
| For 2012.02 <br />
|}<br />
<br />
Windows binaries:<br />
{| class="wikitable" width=100% style="background-color:#ffffff;"<br />
| '''Version''' <br />
| '''Release date''' <br />
| '''Dependencies''' <br />
| '''Download''' <br />
| '''Notes''' <br />
| '''MITK Release''' <br />
|-<br />
| 1.4.0 <br />
| 24-Feb-2012 <br />
| - <br />
| [[Media:Download$MITKPluginGenerator-1.4.0-win32.zip|MITKPluginGenerator-1.4.0-win32.zip]] <br />
| x32 binary <br />
| For 2012.06 <br />
|-<br />
| 1.3.0 <br />
| 26-Jan-2012 <br />
| - <br />
| [[Media:Download$MITKPluginGenerator-1.3.0-win32.zip|MITKPluginGenerator-1.3.0-win32.zip]] <br />
| x32 binary <br />
| For 2012.02 <br />
|}<br />
<br />
<br />
Sources:<br />
<br />
If the above binary downloads are not compatible with your system, you can download the Plugin Generator sources and build it yourself (basic CMake knowledge required).<br />
<br />
* [[Media:Download$MITKPluginGenerator-1.4.0-src-unix.tar.gz|MITKPluginGenerator-1.4.0-src-unix.tar.gz]] (UNIX style line endings)<br />
<br />
*[[Media:Download$MITKPluginGenerator-1.4.0-src-win32.zip|MITKPluginGenerator-1.4.0-src-win32.zip]] (Windows style line endings)</div>AndreasFetzerhttp://mitk.org/w/index.php?title=Documentation&diff=2618Documentation2015-06-03T13:32:39Z<p>AndreasFetzer: /* Latest release: MITK 2014.10.0 */</p>
<hr />
<div>__TOC__<br />
<br />
<br />
== Latest release: MITK 2015.05.0 ==<br />
<br />
* [[MITK_ReleaseNotes_2015.05| Release notes]]<br />
* [http://docs.mitk.org/2015.05/MITKUserManualPage.html User Manual]<br />
* [http://docs.mitk.org/2015.05/ API documentation and concepts]<br />
* [http://docs.mitk.org/2015.05/TutorialPage.html Tutorial]<br />
<br />
Older version are [[#Documentation for all released versions|further down]] on this page.<br />
<br />
== Nightly generated documentation ==<br />
Documentation is also generated nightly by Doxygen from the MITK Git repository:<br />
<br />
* [http://docs.mitk.org/nightly/ API Documentation]<br />
* [http://docs.mitk.org/nightly/TutorialPage.html Tutorial]<br />
* [http://docs.mitk.org/nightly/MITKUserManualPage.html User Manual]<br />
<br />
== BlueBerry documentation ==<br />
The BlueBerry framework has its own doxygen documentation [http://docs.mitk.org/nightly/BlueBerryIntro.html here].<br />
<br />
To get started read [http://docs.mitk.org/nightly/HowToNewProject.html HowToNewProject].<br />
<br />
Read the MITK [[PluginStyleGuide| Plugin Style Guide]] for more information about the structure and content of a MITK Plug-in.<br />
<br />
== Other documentation ==<br />
* Getting started with the demo application: [http://mint-medical.de/wp-content/mitk3m3_documentation/index.html MITK 3M3 introduction] , a bit outdated: [[Media:Documentation$MITK-MainApp-Getting-Started.pdf|MITK MainApp Getting Started]]<br />
* [[Interaction_concept|Interaction]] concept of MITK<br />
* [[Undo_concept|Undo/Redo]] concept of MITK<br />
* PPT-slide on Interaction and Undo in MITK (from MITK seminar 2010): [[Media:Documentation$MITK-InteractionAndUndo.pdf|MITK Interaction and Undo 2010]]<br />
* [[Interactive_segmentation|Interactive segmentation]] is a program module of the MITK application<br />
<br />
<br />
== Bug Squashing Seminars ==<br />
Once a week we start our bug squashing party with a short talk about some MITK or software related topicv. The seminar slides are collected on [[BugSquashingSeminars]].<br />
<br />
<br />
<div class="mw-collapsible mw-collapsed"><br />
== MITK workshop at the BVM Conference ==<br />
<br />
<br />
<div class="mw-collapsible-content"><br />
'''MITK workshop at the BVM Conference 2013'''<br />
In March 2013 we held yet another tutorial on MITK during the conference [http://www.bvm-workshop.org/ BVM]. Here are the slides:<br />
<br />
[[Media:Documentation$MITK-Tutorial-BVM-2013.pdf| MITK Tutorial BVM 2013]]<br />
<br />
<br />
'''MITK workshop at the BVM Conference 2010'''<br />
In March 2010 we held another tutorial on MITK during the conference [http://www.bvm-workshop.org/ BVM]. Here are the slides (some are only in German):<br />
<br />
MITK: [[Media:Documentation$MITK-BVM10.pdf| MITK Tutorial BVM 2010]]<br />
<br />
BlueBerry framework: [[Media:Documentation$BlueBerry-BVM10.pdf| BlueBerry BVM 2010]]<br />
<br />
MITK-IGT: [[Media:Documentation$MITK-IGT-BVM10.pdf| MITK IGT BVM 2010]]<br />
<br />
<br />
'''MITK workshop at the BVM Conference 2009'''<br />
In March 2009 we held a tutorial on MITK during the conference [http://www.bvm-workshop.org/ BVM]. Here are the slides:<br />
<br />
Data management in MITK: [[Media:Documentation$MITK-DataManagement-bvm09.pdf|DataManagement BVM 2009]]<br />
<br />
Introduction to MITK-IGT: [[Media:Documentation$MITK-IGT-BVM09.pdf|MITK IGT BVM 2009]]<br />
<br />
Introduction to openCherry: [[Media:Documentation$openCherry-BVM09.pdf|openCherry BVM 2009]]<br />
</div></div><br />
<br />
<br />
<br />
== Mailinglist ==<br />
We maintain a [[Mailinglist]] for MITK. [http://dir.gmane.org/gmane.comp.lib.mitk.user Searching the archives with GMane] could help to find answers to your questions. Of course, posting your questions to the mailing list will get you an answer too.<br />
<br />
<br />
<div class="mw-collapsible mw-collapsed"><br />
== Documentation for all released versions ==<br />
<br />
<div class="mw-collapsible-content"><br />
{| class="wikitable" width=100% style="background-color:#ffffff;" <br />
| '''Version''' <br />
| '''Release date''' <br />
| '''Download link''' <br />
|colspan=3 align="center" | '''Documentation''' <br />
|-<br />
| 2014.03.00<br />
| 15.04.2014<br />
| only online <br />
| [http://docs.mitk.org/2014.03/ API] <br />
| [http://docs.mitk.org/2014.03/TutorialPage.html Tutorial] <br />
| [http://docs.mitk.org/2014.03/MITKUserManualPage.html User Manual] <br />
|-<br />
| 2013.12.00<br />
| 09.12.2013<br />
| only online <br />
| [http://docs.mitk.org/2013.12/ API] <br />
| [http://docs.mitk.org/2013.12/TutorialPage.html Tutorial] <br />
| [http://docs.mitk.org/2013.12/MITKUserManualPage.html User Manual] <br />
|-<br />
| 2013.09.00<br />
| 07.10.2013<br />
| only online <br />
| [http://docs.mitk.org/2013.09/ API] <br />
| [http://docs.mitk.org/2013.09/TutorialPage.html Tutorial] <br />
| [http://docs.mitk.org/2013.09/MITKUserManualPage.html User Manual] <br />
|-<br />
| 2013.06.00<br />
| 28.06.2013<br />
| only online <br />
| [http://docs.mitk.org/2013.06/ API] <br />
| [http://docs.mitk.org/2013.06/TutorialPage.html Tutorial] <br />
| [http://docs.mitk.org/2013.06/MITKUserManualPage.html User Manual] <br />
|-<br />
| 2013.03.00<br />
| 31.03.2013<br />
| only online <br />
| [http://docs.mitk.org/2013.03/ API] <br />
| [http://docs.mitk.org/2013.03/TutorialPage.html Tutorial] <br />
| [http://docs.mitk.org/2013.03/MITKUserManualPage.html User Manual] <br />
|-<br />
| 2012.12.00<br />
| 20.12.2012<br />
| only online <br />
| [http://docs.mitk.org/2012.12/ API] <br />
| [http://docs.mitk.org/2012.12/TutorialPage.html Tutorial] <br />
| [http://docs.mitk.org/2012.12/MITKUserManualPage.html User Manual] <br />
|-<br />
| 2012.09.00<br />
| 25.09.2012<br />
| only online <br />
| [http://docs.mitk.org/2012.09/ API] <br />
| [http://docs.mitk.org/2012.09/TutorialPage.html Tutorial] <br />
| [http://docs.mitk.org/2012.09/MITKUserManualPage.html User Manual] <br />
|-<br />
| 2012.06.00<br />
| 15.06.2012<br />
| only online <br />
| [http://docs.mitk.org/2012.06/ API] <br />
| [http://docs.mitk.org/2012.06/TutorialPage.html Tutorial] <br />
| [http://docs.mitk.org/2012.06/MITKUserManualPage.html User Manual] <br />
|-<br />
| 2012.02.00<br />
| 07.02.2012<br />
| only online <br />
| [http://docs.mitk.org/2012.02.0/ API] <br />
| [http://docs.mitk.org/2012.02.0/TutorialPage.html Tutorial] <br />
| [http://docs.mitk.org/2012.02.0/MITKManualMainPage.html User Manual] <br />
|-<br />
| 0.99.3 <br />
| 15-Dec-2010 <br />
| only online <br />
| [http://docs.mitk.org/0.99.3/ API] <br />
| [http://docs.mitk.org/0.99.3/TutorialPage.html Tutorial] <br />
| <br />
|-<br />
| 0.14 <br />
| 22-Dec-2009 <br />
| only online <br />
| [http://docs.mitk.org/0.14/ API] <br />
| [http://docs.mitk.org/0.14/TutorialPage.html Tutorial] <br />
| <br />
|-<br />
| 0.12.2 <br />
| 12-Jun-2009 <br />
| [http://sourceforge.net/project/showfiles.php?group_id=147803&package_id=162973&release_id=688539 Download] <br />
| [http://docs.mitk.org/0.12/ API] <br />
| [http://docs.mitk.org/0.12/TutorialPage.html Tutorial] <br />
| <br />
|-<br />
| 0.12 <br />
| 07-May-2009 <br />
| [http://sourceforge.net/project/showfiles.php?group_id=147803&package_id=162973&release_id=681022 Download] <br />
| [http://docs.mitk.org/0.12/ API] <br />
| [http://docs.mitk.org/0.12/TutorialPage.html Tutorial] <br />
| <br />
|-<br />
| 0.10 <br />
| 21-Nov-2008 <br />
| [http://sourceforge.net/project/showfiles.php?group_id=147803&package_id=162973&release_id=633472 Download] <br />
| [http://docs.mitk.org/0.10/ API] <br />
| [http://docs.mitk.org/0.10/TutorialPage.html Tutorial] <br />
| <br />
|-<br />
| 0.8 <br />
| 19-Dec-2007 <br />
| [https://sourceforge.net/project/showfiles.php?group_id=147803&package_id=162973&release_id=562760 Download] <br />
| [http://docs.mitk.org/0.8/ API] <br />
| [http://docs.mitk.org/0.8/TutorialPage.html Tutorial] <br />
| <br />
|-<br />
| 0.6 <br />
| 27-Jun-2006 <br />
| [https://sourceforge.net/project/showfiles.php?group_id=147803&package_id=162973&release_id=427988 Download] <br />
| [http://docs.mitk.org/0.6/ API] <br />
| [http://docs.mitk.org/0.6/TutorialPage.html Tutorial] <br />
| <br />
|-<br />
| 0.4 <br />
| 21-Oct-2005 <br />
| [https://sourceforge.net/project/showfiles.php?group_id=147803&package_id=162973&release_id=365046 Download] <br />
| [http://docs.mitk.org/0.4/ API] <br />
| [http://docs.mitk.org/0.4/TutorialPage.html Tutorial] <br />
|}<br />
<br />
</div></div></div>AndreasFetzerhttp://mitk.org/w/index.php?title=MITK_Release_Cycle&diff=2617MITK Release Cycle2015-06-03T13:29:47Z<p>AndreasFetzer: </p>
<hr />
<div>__NOTOC__<br />
The MITK toolkit is released in snapshots every 3-4 months. The focus of the snapshots is the toolkit. They contain the source code and binary packages of an application for image viewing, measurement and segmentation.<br />
<br />
Apart from the snapshots several projects release specific application versions and configurations like [[DiffusionImaging|Diffusion Imaging]].<br />
<br />
<br />
== Release schedule ==<br />
{|class="wikitable" width=100% style="style="background-color:#ffffff;"<br />
! Name<br />
! Status<br />
! Release date<br />
! Feature freeze<br />
! Comments<br />
|-<br />
|style="background-color:#ffff66;" | [[MITK_ReleaseNotes_2015.10 | MITK 2015.10]] <br />
|style="background-color:#ffff66" |Scheduled<br />
|style="background-color:#ffff66" |''30.09.2015'' <br />
|style="background-color:#ffff66" |''14.09.2015'' <br />
|style="background-color:#ffff66" | <br />
|-<br />
|style="background-color:#ffff66" | [[MITK_ReleaseNotes_2015.05 | MITK 2015.05]] <br />
|style="background-color:#ffff66" |Scheduled<br />
|style="background-color:#ffff66" |''03.06.2015'' <br />
|style="background-color:#ffff66" |''04.03.2015'' <br />
|style="background-color:#ffff66" | CMake minimum version 3.2.1, Qt 5 support<br />
|-<br />
|style="background-color:#8FFF6F" | [[MITK_ReleaseNotes_2014.10 | MITK 2014.10]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''27.11.2014'' <br />
|style="background-color:#8FFF6F" |''12.09.2014'' <br />
|style="background-color:#8FFF6F" | New Plugins for e.g. Remeshing, Movie/Screenshotmaker, ...<br />
|-<br />
|style="background-color:#8FFF6F" | [[MITK-ReleaseNotes-2014-03 | MITK 2014.03]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''15.04.2014'' <br />
|style="background-color:#8FFF6F" |''12.03.2014'' <br />
|style="background-color:#8FFF6F" | Includes VTK 6 compatibility <br />
|-<br />
|style="background-color:#8FFF6F" | [[MITK-ReleaseNotes-2013-12| MITK 2013.12]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''09.12.2013'' <br />
|style="background-color:#8FFF6F" |''12.11.2013'' <br />
|style="background-color:#8FFF6F" |Geometry redesign, mitk::ScalarType moved from float to double <br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2013-09 | MITK 2013.09]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''07.10.2013'' <br />
|style="background-color:#8FFF6F" |''10.09.2013'' <br />
|style="background-color:#8FFF6F" | <br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2013-06 | MITK 2013.06]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''28.06.2013'' <br />
|style="background-color:#8FFF6F" |''12.06.2013'' <br />
|style="background-color:#8FFF6F" | Moved to ITK4<br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2013-03 | MITK 2013.03]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''31.03.2013'' <br />
|style="background-color:#8FFF6F" |''13.03.2013'' <br />
|style="background-color:#8FFF6F" | Redesigned interaction framwork<br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2012-12 | MITK 2012.12]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''20.12.2012'' <br />
|style="background-color:#8FFF6F" |''28.11.2012'' <br />
|style="background-color:#8FFF6F" | Image-access via dedicated ImageAccessors<br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2012-09 | MITK 2012.09]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''25.09.2012'' <br />
|style="background-color:#8FFF6F" |''04.09.2012'' <br />
|style="background-color:#8FFF6F" | Includes '''experimental''' DICOM Query/Retrieve <br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2012-06 | MITK 2012.06]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |15.06.2012 <br />
|style="background-color:#8FFF6F" |30.05.2012 <br />
|style="background-color:#8FFF6F" | <br />
|-<br />
|style="background-color:#8FFF6F" |MITK 2012.02 <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |07.02.2012 <br />
|style="background-color:#8FFF6F" |01.02.2012 <br />
|style="background-color:#8FFF6F" |Test release, no binary packages, only [http://mitk.org/git/?p=MITK.git;a=shortlog;h=refs/heads/releases/2012-02 source] <br />
|}<br />
<br />
== Version scheme ==<br />
Toolkit versions of MITK consist of three components, defined in CMake/mitkSetupVariables.cmake and accessible through <code><nowiki>MITKConfig.cmake</nowiki></code> and <code><nowiki>mitkConfig.h</nowiki></code><br />
<br />
* '''MITK_VERSION_MAJOR''': Year of the release<br />
* '''MITK_VERSION_MINOR''': Month of the release (two digits)<br />
* '''MITK_VERSION_PATCH''': Numbering of releases in this month:<br />
** <code><nowiki>.0</nowiki></code> is the first one,<br />
** <code><nowiki>.2</nowiki></code> the second one (based on <code><nowiki>.0</nowiki></code>, not HEAD)<br />
** odd numbers specifying development versions<br />
<br />
<code><nowiki>2012.02.0</nowiki></code> is the first snapshot release in February 2012. Bugfix releases for this will be called <code><nowiki>2012.02.2</nowiki></code>, <code><nowiki>2012.02.4</nowiki></code> ... .<br />
<br />
<br />
=== Why is there no MITK 1.0? ===<br />
MITK as a toolkit is mature and usable for some time now. Somehow we "missed" releasing a specific version as 1.0 . Since 1.0 mostly has a political and cultural meaning (see [http://en.wikipedia.org/wiki/Versioning#Version_1.0_as_a_milestone Wikipedia] on this) we decided to skip 1.0 and move to a date-based versioning scheme for the toolkit.<br />
<br />
Still there will be 1.0 releases of applications based on MITK.<br />
<br />
<br />
=== Old versions ===<br />
The old versioning scheme created some confusion, so we will give a short overview on the existing versions so far:<br />
{| border="1" width=100% cellpadding="2" cellspacing="0"<br />
| 0.10, 0.12, 0.12.2, 0.14 <br />
| Official releases <br />
|-<br />
| 0.99.x <br />
| Snapshot releases that were intended as previews of MITK 1.0 . These are completely outdated, see above <br />
|-<br />
| 0.15.1 <br />
| This is the current master/trunk/HEAD release, following our old versioning scheme. As soon as we have completely moved to the new scheme this number will not appear anywhere anymore. <br />
|}<br />
<br />
<br />
=== Other versions ===<br />
Tags named "releases/snapshot-YYYYMMDD" are usually created for projects using MITK which need to permanently mark a specific version of MITK. Please be aware that these releases are not always fully tested since most projects only use parts of MITK.<br />
<br />
<br />
== Version control ==<br />
New versions will be put in branches named releases/2012-02 during development and tagged after the release. More detailed information will be put here and on the download page.</div>AndreasFetzerhttp://mitk.org/w/index.php?title=MITK_Release_Cycle&diff=2616MITK Release Cycle2015-06-03T13:28:56Z<p>AndreasFetzer: </p>
<hr />
<div>__NOTOC__<br />
The MITK toolkit is released in snapshots every 3-4 months. The focus of the snapshots is the toolkit. They contain the source code and binary packages of an application for image viewing, measurement and segmentation.<br />
<br />
Apart from the snapshots several projects release specific application versions and configurations like [[DiffusionImaging|Diffusion Imaging]].<br />
<br />
<br />
== Release schedule ==<br />
{|class="wikitable" width=100% style="style="background-color:#ffffff;"<br />
! Name<br />
! Status<br />
! Release date<br />
! Feature freeze<br />
! Comments<br />
|-<br />
|style="background-color:#ffff66;" | [[MITK_ReleaseNotes_2015.10 | MITK 2015.10]] <br />
|style="background-color:#ffff66" |Scheduled<br />
|style="background-color:#ffff66" |''14.09.2015'' <br />
|style="background-color:#ffff66" |''30.09.2015'' <br />
|style="background-color:#ffff66" | <br />
|-<br />
|style="background-color:#ffff66" | [[MITK_ReleaseNotes_2015.05 | MITK 2015.05]] <br />
|style="background-color:#ffff66" |Scheduled<br />
|style="background-color:#ffff66" |''03.06.2015'' <br />
|style="background-color:#ffff66" |''04.03.2015'' <br />
|style="background-color:#ffff66" | CMake minimum version 3.2.1, Qt 5 support<br />
|-<br />
|style="background-color:#8FFF6F" | [[MITK_ReleaseNotes_2014.10 | MITK 2014.10]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''27.11.2014'' <br />
|style="background-color:#8FFF6F" |''12.09.2014'' <br />
|style="background-color:#8FFF6F" | New Plugins for e.g. Remeshing, Movie/Screenshotmaker, ...<br />
|-<br />
|style="background-color:#8FFF6F" | [[MITK-ReleaseNotes-2014-03 | MITK 2014.03]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''15.04.2014'' <br />
|style="background-color:#8FFF6F" |''12.03.2014'' <br />
|style="background-color:#8FFF6F" | Includes VTK 6 compatibility <br />
|-<br />
|style="background-color:#8FFF6F" | [[MITK-ReleaseNotes-2013-12| MITK 2013.12]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''09.12.2013'' <br />
|style="background-color:#8FFF6F" |''12.11.2013'' <br />
|style="background-color:#8FFF6F" |Geometry redesign, mitk::ScalarType moved from float to double <br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2013-09 | MITK 2013.09]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''07.10.2013'' <br />
|style="background-color:#8FFF6F" |''10.09.2013'' <br />
|style="background-color:#8FFF6F" | <br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2013-06 | MITK 2013.06]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''28.06.2013'' <br />
|style="background-color:#8FFF6F" |''12.06.2013'' <br />
|style="background-color:#8FFF6F" | Moved to ITK4<br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2013-03 | MITK 2013.03]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''31.03.2013'' <br />
|style="background-color:#8FFF6F" |''13.03.2013'' <br />
|style="background-color:#8FFF6F" | Redesigned interaction framwork<br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2012-12 | MITK 2012.12]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''20.12.2012'' <br />
|style="background-color:#8FFF6F" |''28.11.2012'' <br />
|style="background-color:#8FFF6F" | Image-access via dedicated ImageAccessors<br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2012-09 | MITK 2012.09]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |''25.09.2012'' <br />
|style="background-color:#8FFF6F" |''04.09.2012'' <br />
|style="background-color:#8FFF6F" | Includes '''experimental''' DICOM Query/Retrieve <br />
|-<br />
|style="background-color:#8FFF6F" |[[MITK-ReleaseNotes-2012-06 | MITK 2012.06]] <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |15.06.2012 <br />
|style="background-color:#8FFF6F" |30.05.2012 <br />
|style="background-color:#8FFF6F" | <br />
|-<br />
|style="background-color:#8FFF6F" |MITK 2012.02 <br />
|style="background-color:#8FFF6F" |Released<br />
|style="background-color:#8FFF6F" |07.02.2012 <br />
|style="background-color:#8FFF6F" |01.02.2012 <br />
|style="background-color:#8FFF6F" |Test release, no binary packages, only [http://mitk.org/git/?p=MITK.git;a=shortlog;h=refs/heads/releases/2012-02 source] <br />
|}<br />
<br />
== Version scheme ==<br />
Toolkit versions of MITK consist of three components, defined in CMake/mitkSetupVariables.cmake and accessible through <code><nowiki>MITKConfig.cmake</nowiki></code> and <code><nowiki>mitkConfig.h</nowiki></code><br />
<br />
* '''MITK_VERSION_MAJOR''': Year of the release<br />
* '''MITK_VERSION_MINOR''': Month of the release (two digits)<br />
* '''MITK_VERSION_PATCH''': Numbering of releases in this month:<br />
** <code><nowiki>.0</nowiki></code> is the first one,<br />
** <code><nowiki>.2</nowiki></code> the second one (based on <code><nowiki>.0</nowiki></code>, not HEAD)<br />
** odd numbers specifying development versions<br />
<br />
<code><nowiki>2012.02.0</nowiki></code> is the first snapshot release in February 2012. Bugfix releases for this will be called <code><nowiki>2012.02.2</nowiki></code>, <code><nowiki>2012.02.4</nowiki></code> ... .<br />
<br />
<br />
=== Why is there no MITK 1.0? ===<br />
MITK as a toolkit is mature and usable for some time now. Somehow we "missed" releasing a specific version as 1.0 . Since 1.0 mostly has a political and cultural meaning (see [http://en.wikipedia.org/wiki/Versioning#Version_1.0_as_a_milestone Wikipedia] on this) we decided to skip 1.0 and move to a date-based versioning scheme for the toolkit.<br />
<br />
Still there will be 1.0 releases of applications based on MITK.<br />
<br />
<br />
=== Old versions ===<br />
The old versioning scheme created some confusion, so we will give a short overview on the existing versions so far:<br />
{| border="1" width=100% cellpadding="2" cellspacing="0"<br />
| 0.10, 0.12, 0.12.2, 0.14 <br />
| Official releases <br />
|-<br />
| 0.99.x <br />
| Snapshot releases that were intended as previews of MITK 1.0 . These are completely outdated, see above <br />
|-<br />
| 0.15.1 <br />
| This is the current master/trunk/HEAD release, following our old versioning scheme. As soon as we have completely moved to the new scheme this number will not appear anywhere anymore. <br />
|}<br />
<br />
<br />
=== Other versions ===<br />
Tags named "releases/snapshot-YYYYMMDD" are usually created for projects using MITK which need to permanently mark a specific version of MITK. Please be aware that these releases are not always fully tested since most projects only use parts of MITK.<br />
<br />
<br />
== Version control ==<br />
New versions will be put in branches named releases/2012-02 during development and tagged after the release. More detailed information will be put here and on the download page.</div>AndreasFetzerhttp://mitk.org/w/index.php?title=Downloads&diff=2615Downloads2015-06-03T13:14:24Z<p>AndreasFetzer: </p>
<hr />
<div>__TOC__<br />
<br />
<br />
== MITK applications ==<br />
<br />
<br />
=== MITK Workbench ===<br />
<br />
MITK releases include binary installers for Linux, Mac OS, and Windows. Please note these installers contain only the example application, not a SDK.<br />
<br />
If you have problems running the application on Windows, please install the Microsoft Redistributable Packages for VS 2008 ([http://www.microsoft.com/downloads/details.aspx?familyid=A5C84275-3B97-4AB7-A40D-3802B2AF5FC2&displaylang=en 32bit] / [http://www.microsoft.com/downloads/details.aspx?familyid=BA9257CA-337F-4B40-8C14-157CFDFFEE4E&displaylang=en 64bit])<br />
<br />
{|class="wikitable" width=100% style="background-color:#ffffff;"<br />
| '''MITK Release'''<br />
| '''Sources'''<br />
| '''Installers'''<br />
| '''Documentation'''<br />
| '''Supported Platforms'''<br />
|-<br />
| [[MITK_ReleaseNotes_2015.05|2015.05]] <br />
| [http://www.mitk.org/download/releases/MITK-2015.05/MITK-2015.05.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2015.05.0 v2015.05.0]<br />
| [http://www.mitk.org/download/releases/MITK-2015.05/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2015.05/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2014.10/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2015.05/ Doxygen]<br />[http://docs.mitk.org/2015.05/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2015.05/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK_ReleaseNotes_2014.10|2014.10.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2014.10/MITK-2014.10.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2014.10.0 v2014.10.0]<br />
| [http://www.mitk.org/download/releases/MITK-2014.10/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2014.10/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2014.10/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2014.10/ Doxygen]<br />[http://docs.mitk.org/2014.10/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2014.10/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2014-03|2014.03.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2014.03/MITK-2014.03.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2014.03.0 v2014.03.0] <br />
| [http://www.mitk.org/download/releases/MITK-2014.03/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2014.03/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2014.03/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2014.03/ Doxygen]<br />[http://docs.mitk.org/2014.03/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2014.03/SupportedPlatformsPage.html Supported Platforms] <br />
|}<br />
<br />
<br />
==== Previous releases ====<br />
<br />
{|class="mw-collapsible mw-collapsed wikitable" width=100% style="background-color:#ffffff;"<br />
| '''MITK Release'''<br />
| '''Sources'''<br />
| '''Installers'''<br />
| '''Documentation'''<br />
| '''Supported Platforms'''<br />
|-<br />
| [[MITK-ReleaseNotes-2013-12|2013.12.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.12/MITK-2013.12.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.12.0 v2013.12.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.12/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.12/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.12/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.12/ Doxygen]<br />[http://docs.mitk.org/2013.12/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.12/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-09|2013.09.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.09/MITK-2013.09.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.09.0 v2013.09.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.09/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.09/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.09/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.09/ Doxygen]<br />[http://docs.mitk.org/2013.09/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.09/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-06|2013.06.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.06/MITK-2013.06.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.06.0 v2013.06.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.06/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.06/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.06/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.06/ Doxygen]<br />[http://docs.mitk.org/2013.06/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.06/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-03-2|2013.03.2]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.03/MITK-2013.03.2-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.03.2 v2013.03.2] <br />
| not available <br />
| [http://docs.mitk.org/2013.03.2/ Doxygen]<br />[http://docs.mitk.org/2013.03.2/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.03.2/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2013-03|2013.03.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2013.03/MITK-2013.03.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2013.03.0 v2013.03.0] <br />
| [http://www.mitk.org/download/releases/MITK-2013.03/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2013.03/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2013.03/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2013.03/ Doxygen]<br />[http://docs.mitk.org/2013.03/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2013.03/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2012-12|2012.12.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2012.12/MITK-2012.12.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2012.12.0 v2012.12.0] <br />
| [http://www.mitk.org/download/releases/MITK-2012.12/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2012.12/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2012.12/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2012.12/ Doxygen]<br />[http://docs.mitk.org/2012.12/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2012.12/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2012-09|2012.09.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2012.09/MITK-2012.09.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2012.09.0 v2012.09.0] <br />
| [http://www.mitk.org/download/releases/MITK-2012.09/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2012.09/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2012.09/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2012.09/ Doxygen]<br />[http://docs.mitk.org/2012.09/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2012.09/SupportedPlatformsPage.html Supported Platforms] <br />
|-<br />
| [[MITK-ReleaseNotes-2012-06|2012.06.0]] <br />
| [http://www.mitk.org/download/releases/MITK-2012.06/MITK-2012.06.0-src.tar.gz Archive]<br />Git tag [http://mitk.org/git/?p=MITK.git;a=tag;h=refs/tags/v2012.06.0 v2012.06.0] <br />
| [http://www.mitk.org/download/releases/MITK-2012.06/Windows/ Windows]<br />[http://www.mitk.org/download/releases/MITK-2012.06/Linux/ Linux]<br />[http://www.mitk.org/download/releases/MITK-2012.06/MacOS/ Mac OS] <br />
| [http://docs.mitk.org/2012.06/ Doxygen]<br />[http://docs.mitk.org/2012.06/BuildInstructionsPage.html Build Instructions] <br />
| [http://docs.mitk.org/2012.06/SupportedPlatformsPage.html Supported Platforms] <br />
|}<br />
<br />
<br />
Some older releases can be found at the [http://sourceforge.net/projects/mitk/ MITK SourceForge project site.]<br />
<br />
Nightly built installers can be found [http://www.mitk.org/download/nightly-builds here]. Caution! These are automatically generated ''untested developer versions''!<br />
<br />
<br />
=== MITK Diffusion ===<br />
<br />
MITK Diffusion is an application designed around the workflows for the analysis of diffusion MRI data. As such it is a binary release which expands the functionality available in the MITK Workbench.<br />
<br />
The current release '''2014.10.02''' is available here.<br />
<br />
{| class="wikitable" width=100% style="background-color:#ffffff;"<br />
! Windows <br />
| Vista, Windows 7 <br />
| [http://www.mitk.org/download/releases/MITK-Diffusion-2014.10/Windows/MITK-Diffusion-2014.10.02-win64.exe MS Windows (64 bit) installer] <br />
|-<br />
! Linux <br />
| Ubuntu 14.04 and newer <br />
| [http://www.mitk.org/download/releases/MITK-Diffusion-2014.10/Linux/MITK-Diffusion-2014.10.02-linux64.tar.gz Ubuntu (64 bit), tar.gz archive] <br />
|-<br />
! Mac OS X <br />
| OS X 10.8 and newer <br />
| [http://www.mitk.org/download/releases/MITK-Diffusion-2014.10/MacOS/MITK-Diffusion-2014.10.02-mac64.dmg 10.8 OS X disk image] <br />
|}<br />
<br />
For older releases or more information regarding MITK Diffusion visit our [[DiffusionImaging|MITK Diffusion site]].<br />
<br />
<br />
=== MITK 3M3 ===<br />
<br />
There is also a binary installer for the [http://www.mint-medical.de/productssolutions/mitk3m3/mitk3m3/ '''MITK 3M3'''] image analysis application which is based on MITK.<br />
<br />
<br />
=== Special Releases ===<br />
Recent releases of special applications can be found [http://www.mitk.org/download/releases/ here]. <br />
<br />
<br />
== MITK Source Code ==<br />
We recommend to use the source code archive from the latest MITK release (see table above) or to check out the corresponding git tag.<br />
<br />
If you need bug fixes or features which are not yet included in a MITK release, you can also clone the Git repository at:<br />
<br />
<pre>http://git.mitk.org/MITK.git</pre><br />
<br />
<br />
Before updating to a current development version, you can check the status of the [http://cdash.mitk.org/index.php?project=MITK MITK continuous integration system].<br />
<br />
For details about Git, see also [[MitkGit| Mitk & Git]].<br />
<br />
<br />
== Getting Started ==<br />
<br />
Build instructions are available in the [http://docs.mitk.org/nightly/BuildInstructionsPage.html MITK documentation]. Build requirements are listed [http://www.mitk.org/wiki/Build_requirements here]. See the [[Documentation]] page for further links.<br />
<br />
<br />
== Plugin Generator ==<br />
<br />
The MITK Plugin Generator is a command line tool which can generate CTK-style MITK plug-ins and optionally a whole CMake project to boostrap the process of setting up a MITK-based project.<br />
<br />
For more information, please see the [http://docs.mitk.org/nightly/HowToNewProject.html Documentation].<br />
<br />
Linux binaries:<br />
{| class="wikitable" width=100% style="background-color:#ffffff;"<br />
| '''Version''' <br />
| '''Release date''' <br />
| '''Dependencies''' <br />
| '''Download''' <br />
| '''Notes''' <br />
| '''MITK Release''' <br />
|-<br />
| 1.4.0 <br />
| 24-Feb-2012 <br />
| Qt 4.6.2 <br />
| [[Media:Download$MITKPluginGenerator-1.4.0-Linux.tar.gz|MITKPluginGenerator-1.4.0-Linux.tar.gz]] <br />
| Build on Ubuntu 11.04 x64 <br />
| For 2012.06 <br />
|-<br />
| 1.3.0 <br />
| 26-Jan-2012 <br />
| Qt 4.6.2 <br />
| [[Media:Download$MITKPluginGenerator-1.3.0-Linux.tar.gz|MITKPluginGenerator-1.3.0-Linux.tar.gz]] <br />
| Build on Ubuntu 11.04 x64 <br />
| For 2012.02 <br />
|}<br />
<br />
Windows binaries:<br />
{| class="wikitable" width=100% style="background-color:#ffffff;"<br />
| '''Version''' <br />
| '''Release date''' <br />
| '''Dependencies''' <br />
| '''Download''' <br />
| '''Notes''' <br />
| '''MITK Release''' <br />
|-<br />
| 1.4.0 <br />
| 24-Feb-2012 <br />
| - <br />
| [[Media:Download$MITKPluginGenerator-1.4.0-win32.zip|MITKPluginGenerator-1.4.0-win32.zip]] <br />
| x32 binary <br />
| For 2012.06 <br />
|-<br />
| 1.3.0 <br />
| 26-Jan-2012 <br />
| - <br />
| [[Media:Download$MITKPluginGenerator-1.3.0-win32.zip|MITKPluginGenerator-1.3.0-win32.zip]] <br />
| x32 binary <br />
| For 2012.02 <br />
|}<br />
<br />
<br />
Sources:<br />
<br />
If the above binary downloads are not compatible with your system, you can download the Plugin Generator sources and build it yourself (basic CMake knowledge required).<br />
<br />
* [[Media:Download$MITKPluginGenerator-1.4.0-src-unix.tar.gz|MITKPluginGenerator-1.4.0-src-unix.tar.gz]] (UNIX style line endings)<br />
<br />
*[[Media:Download$MITKPluginGenerator-1.4.0-src-win32.zip|MITKPluginGenerator-1.4.0-src-win32.zip]] (Windows style line endings)</div>AndreasFetzerhttp://mitk.org/w/index.php?title=MITK_Release_Cycle&diff=2614MITK Release Cycle2015-06-03T13:01:05Z<p>AndreasFetzer: </p>
<hr />
<div>__NOTOC__<br />
The MITK toolkit is released in snapshots every 3-4 months. The focus of the snapshots is the toolkit. They contain the source code and binary packages of an application for image viewing, measurement and segmentation.<br />
<br />
Apart from the snapshots several projects release specific application versions and configurations like [[DiffusionImaging|Diffusion Imaging]].<br />
<br />
<br />
== Release schedule ==<br />
{|class="wikitable" width=100% style="background-color:#ffffff;"<br />
! Name<br />
! Status<br />
! Release date<br />
! Feature freeze<br />
! Comments<br />
|-<br />
|bgcolor="#FFFF66" | [[MITK_ReleaseNotes_2015.05 | MITK 2015.05]] <br />
|bgcolor="#FFFF66" |Scheduled<br />
|bgcolor="#FFFF66" |''03.06.2015'' <br />
|bgcolor="#FFFF66" |''04.03.2015'' <br />
|bgcolor="#FFFF66" | CMake minimum version 3.2.1, Qt 5 support<br />
|-<br />
|bgcolor="#00cc00" | [[MITK_ReleaseNotes_2014.10 | MITK 2014.10]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |''27.11.2014'' <br />
|bgcolor="#00cc00" |''12.09.2014'' <br />
|bgcolor="#00cc00" | New Plugins for e.g. Remeshing, Movie/Screenshotmaker, ...<br />
|-<br />
|bgcolor="#00cc00" | [[MITK-ReleaseNotes-2014-03 | MITK 2014.03]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |''15.04.2014'' <br />
|bgcolor="#00cc00" |''12.03.2014'' <br />
|bgcolor="#00cc00" | Includes VTK 6 compatibility <br />
|-<br />
|bgcolor="#00cc00" | [[MITK-ReleaseNotes-2013-12| MITK 2013.12]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |''09.12.2013'' <br />
|bgcolor="#00cc00" |''12.11.2013'' <br />
|bgcolor="#00cc00" |Geometry redesign, mitk::ScalarType moved from float to double <br />
|-<br />
|bgcolor="#00cc00" |[[MITK-ReleaseNotes-2013-09 | MITK 2013.09]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |''07.10.2013'' <br />
|bgcolor="#00cc00" |''10.09.2013'' <br />
|bgcolor="#00cc00" | <br />
|-<br />
|bgcolor="#00cc00" |[[MITK-ReleaseNotes-2013-06 | MITK 2013.06]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |''28.06.2013'' <br />
|bgcolor="#00cc00" |''12.06.2013'' <br />
|bgcolor="#00cc00" | Moved to ITK4<br />
|-<br />
|bgcolor="#00cc00" |[[MITK-ReleaseNotes-2013-03 | MITK 2013.03]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |''31.03.2013'' <br />
|bgcolor="#00cc00" |''13.03.2013'' <br />
|bgcolor="#00cc00" | Redesigned interaction framwork<br />
|-<br />
|bgcolor="#00cc00" |[[MITK-ReleaseNotes-2012-12 | MITK 2012.12]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |''20.12.2012'' <br />
|bgcolor="#00cc00" |''28.11.2012'' <br />
|bgcolor="#00cc00" | Image-access via dedicated ImageAccessors<br />
|-<br />
|bgcolor="#00cc00" |[[MITK-ReleaseNotes-2012-09 | MITK 2012.09]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |''25.09.2012'' <br />
|bgcolor="#00cc00" |''04.09.2012'' <br />
|bgcolor="#00cc00" | Includes '''experimental''' DICOM Query/Retrieve <br />
|-<br />
|bgcolor="#00cc00" |[[MITK-ReleaseNotes-2012-06 | MITK 2012.06]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |15.06.2012 <br />
|bgcolor="#00cc00" |30.05.2012 <br />
|bgcolor="#00cc00" | <br />
|-<br />
|bgcolor="#8FFF6F" |MITK 2012.02 <br />
|bgcolor="#8FFF6F" |Released<br />
|bgcolor="#8FFF6F" |07.02.2012 <br />
|bgcolor="#8FFF6F" |01.02.2012 <br />
|bgcolor="#8FFF6F" |Test release, no binary packages, only [http://mitk.org/git/?p=MITK.git;a=shortlog;h=refs/heads/releases/2012-02 source] <br />
|}<br />
<br />
== Version scheme ==<br />
Toolkit versions of MITK consist of three components, defined in CMake/mitkSetupVariables.cmake and accessible through <code><nowiki>MITKConfig.cmake</nowiki></code> and <code><nowiki>mitkConfig.h</nowiki></code><br />
<br />
* '''MITK_VERSION_MAJOR''': Year of the release<br />
* '''MITK_VERSION_MINOR''': Month of the release (two digits)<br />
* '''MITK_VERSION_PATCH''': Numbering of releases in this month:<br />
** <code><nowiki>.0</nowiki></code> is the first one,<br />
** <code><nowiki>.2</nowiki></code> the second one (based on <code><nowiki>.0</nowiki></code>, not HEAD)<br />
** odd numbers specifying development versions<br />
<br />
<code><nowiki>2012.02.0</nowiki></code> is the first snapshot release in February 2012. Bugfix releases for this will be called <code><nowiki>2012.02.2</nowiki></code>, <code><nowiki>2012.02.4</nowiki></code> ... .<br />
<br />
<br />
=== Why is there no MITK 1.0? ===<br />
MITK as a toolkit is mature and usable for some time now. Somehow we "missed" releasing a specific version as 1.0 . Since 1.0 mostly has a political and cultural meaning (see [http://en.wikipedia.org/wiki/Versioning#Version_1.0_as_a_milestone Wikipedia] on this) we decided to skip 1.0 and move to a date-based versioning scheme for the toolkit.<br />
<br />
Still there will be 1.0 releases of applications based on MITK.<br />
<br />
<br />
=== Old versions ===<br />
The old versioning scheme created some confusion, so we will give a short overview on the existing versions so far:<br />
{| border="1" width=100% cellpadding="2" cellspacing="0"<br />
| 0.10, 0.12, 0.12.2, 0.14 <br />
| Official releases <br />
|-<br />
| 0.99.x <br />
| Snapshot releases that were intended as previews of MITK 1.0 . These are completely outdated, see above <br />
|-<br />
| 0.15.1 <br />
| This is the current master/trunk/HEAD release, following our old versioning scheme. As soon as we have completely moved to the new scheme this number will not appear anywhere anymore. <br />
|}<br />
<br />
<br />
=== Other versions ===<br />
Tags named "releases/snapshot-YYYYMMDD" are usually created for projects using MITK which need to permanently mark a specific version of MITK. Please be aware that these releases are not always fully tested since most projects only use parts of MITK.<br />
<br />
<br />
== Version control ==<br />
New versions will be put in branches named releases/2012-02 during development and tagged after the release. More detailed information will be put here and on the download page.</div>AndreasFetzerhttp://mitk.org/w/index.php?title=MITK_ReleaseNotes_2015.05&diff=2544MITK ReleaseNotes 2015.052015-04-17T13:09:45Z<p>AndreasFetzer: </p>
<hr />
<div><pre>This page is only a draft!</pre><br />
<br />
[[File:Release2015-03.png|thumb|300px|MITK ReleaseNotes 2015.03]]<br />
<br />
This is the 2015.03 release of the [[MITK_Release_Cycle|MITK release cycle]]. The complete list of new features, bug fixes and known issues is down on this page.<br />
<br />
__TOC__<br />
<br />
<br />
== What's included? ==<br />
Binary installers for Windows, Mac OS X and Linux are provided, which contain the ''MITK Workbench'' application. In addition to image loading/saving and level windowing, the following plugins are included:<br />
<br />
* Volume Visualization<br />
* Measurement<br />
* Interactive Segmentation<br />
* Logging View<br />
* Remeshing<br />
* Pointset Interaction<br />
* Image Cropper<br />
* View Navigator<br />
* Screenshot Maker<br />
* Movie Maker<br />
* '''experimental''' Point-based, rigid and manual registration<br />
* '''experimental''' DICOM Query/Retrieve (based on components from the Common Toolkit [http://commontk.org CTK])<br />
<br />
Please note that the installers do not contain the source code or header files for the precompiled libraries. To develop applications or plugins with MITK please get the [[Downloads#Source_code| source code]].<br />
<br />
<br />
== How to get it? ==<br />
Please have a look at the [[Downloads|download page]].<br />
<br />
<br />
== Highlights of 2015.03 release ==<br />
<br />
<br />
=== Build system ===<br />
* C++ 11 support<br />
* Directory layout has changed (third party lib in ep/ directory)<br />
* CMake 3.2 is now minimum required version<br />
* Qt 5 is default for windows and linux, Qt 4 for Mac OS X<br />
* Separation of src and include in modules<br />
<br />
=== Core modules ===<br />
* Further cleanup of the geometry classes:<br />
** GeometryTransformHolder is a new helper class which manages the transform related variables. Its job is to keep all information about the transform (as e.g.: spacing, offset, transformation matrices) in consistent states. It provides getters and setters to all transformation related information. To make sure, that the geometries are in a proper state, you should always use the set methods to change them.<br />
** BackTransform() function is removed. Please use WorldToIndex() instead.<br />
** The scaling factor in the PlaneGeometry class is removed. It can be calculated directly by GetExtent()/GetExtentInMM().<br />
** Pre- and Post-functions are removed and not necessary any more (except PreSetSpacing). New functions are CheckBounds() and CheckIndexToWorldTransform. Assertions can be implemented in these functions (e.g. see PlaneGeometry.cpp). If you implement these functions in a subclass, make sure, that all classes where your class inherits from have an implementation of this function (e.g. inheritance BaseGeometry <- A <- B. Implementation of CheckBounds in class B needs implementation in A as well!).<br />
<br />
=== Blueberry ===<br />
* Command Framework<br />
* TODO<br />
<br />
=== Modules ===<br />
The following modules were newly added or factored out from existing modules:<br />
<br />
* AlgorithmsExt: Added the anisotropic iterative closest point registration algorithm (AICP) for surfaces<br />
* Multilabel Module: Contains data structures and mappers for displaying multilabel data<br />
* RDF: Containing basic support for dealing with RDF data<br />
<br />
==== Python ====<br />
* Fixed MITK-Python installers for all supported platforms with Qt4<br />
* Added documentation and build instructions for the MITK-Python module<br />
* Added build instructions for MITK-Python with Qt5 <br />
* Experimental Qt5 support<br />
* Upgraded to Numpy 1.9.2<br />
<br />
==== Segmentation ====<br />
* The 3D-interpolation has been extended to work on 4D-images as well.<br />
* Segmentation Utilities View was extended for a ContourModelToImage tab, which allows to convert contour data into an binary image<br />
* Morphologic operators can now be apply in 2D<br />
<br />
==== MITK Workbench ====<br />
<br />
==== IGT ====<br />
* TODO<br />
<br />
==== MITK-ToF ====<br />
* New documentation of camera support level which can be found here: http://mitk.org/wiki/Mitk-ToF-Camera_Support_Levels<br />
* Tested Kinect for Xbox 360 with Visual Studio 2012 and Ubuntu 14.04 including Qt5 and c++11.<br />
<br />
==== Diffusion ====<br />
* To ease maintenance the DiffusionImage class has been removed, instead all functionality previously provided by the DiffusionImage can be achieved using the Image. For an example of how to change your code see the [[DiffusionImageMigrationGuide]]<br />
* The new reader/writer concept, introduced in the last release, has enabled us to recognize and load .nrrd and .nii/.nii.gz images as diffusion weighted images if diffusion information is present. You no longer need to rename them to .dwi or .fsl/fslgz. You can still read the old files however.<br />
<br />
==== Third-Party Toolkits ====<br />
The following toolkits were updated:<br />
<br />
* OpenCV was updated to 2.4.11<br />
* VTK was updated to 6.2<br />
<br />
The following third-party toolkits were added to the MITK superbuild:<br />
<br />
* HF5<br />
* Redland, Raptor, Rascal for RDF support<br />
<br />
== Deprecated Functionality ==<br />
The documentation contains a detailed list of [http://docs.mitk.org/2015.03/group__MITKDeprecatedAPI.html#deprecatedSince2015_03 deprecated functionality]. Please find a summary below:<br />
<br />
* <br />
<br />
<br />
== Breaking Changes ==<br />
<br />
<br />
<br />
== Bugfixes ==<br />
In the 5 months since the last release more than [http://bugs.mitk.org/buglist.cgi?list_id=81595&bug_severity=blocker&bug_severity=critical&bug_severity=major&bug_severity=medium&bug_severity=minor&bug_severity=trivial&bug_severity=unspecified&resolution=FIXED&chfieldto=2015-04-01&chfield=resolution&chfield=bug_status&query_format=advanced&chfieldfrom=2014-11-27&chfieldvalue=FIXED&bug_status=RESOLVED&component=Biophotonics&component=BlueBerry&component=Build%20system&component=Core&component=CoreApp%20Plugins&component=CoreUI&component=Diffusion%20Imaging&component=Documentation&component=IGT&component=Measurement%20%26%20Statistics&component=Modules&component=Other&component=Python%20Wrapping&component=QtWidgetModules&component=Rendering&component=Segmentation&component=ToF&component=Workbench%20Plugins&product=MITK NUMBER] bugs were fixed.<br />
<br />
Not everything could be fixed in time, so here are the most important [http://bugs.mitk.org/buglist.cgi?priority=high&list_id=81597&bug_severity=blocker&bug_severity=critical&bug_severity=major&chfieldto=2016-03-11&chfield=%5BBug%20creation%5D&query_format=advanced&bug_status=UNCONFIRMED&bug_status=CONFIRMED&bug_status=IN_PROGRESS&product=MITK known issues]<br />
<br />
<br />
== New feature list ==<br />
Complete list of new features since MITK 2015.03:<br />
<br />
{| class="wikitable" width=100% style="background-color:#ffffff;"<br />
!ID<br />
!Comp<br />
!Summary<br />
|}</div>AndreasFetzerhttp://mitk.org/w/index.php?title=MITK_Users_Meeting_2015_Agenda&diff=2489MITK Users Meeting 2015 Agenda2015-04-09T06:24:32Z<p>AndreasFetzer: </p>
<hr />
<div><br />
The MITK Users Meeting 2015 takes place on April 27-28 at the DKFZ Communication Center. You can find directions to the German Cancer Research Center (DKFZ) [http://www.dkfz.de/en/dkfz/anfahrt.html here].<br />
<br />
__TOC__<br />
<br />
<br />
== Preliminary Agenda ==<br />
<br />
<br />
=== Monday, April 27, 2015 ===<br />
:{|width=70% cellpadding=5 style="background-color:#ffffff; border:1px solid #BBB"<br />
|width=30% bgcolor="#ebeff5" align="center" |09.00 <br />
|Registration and welcome coffee<br />
|- <br />
|bgcolor="#ebeff5" align="center" |10.00 - 10.15<br />
|'''Welcome session'''<br />
|- <br />
|bgcolor="#ebeff5" align="center" |10.15 - 12.00<br />
|'''User experiences I''' <br />
|-<br />
|bgcolor="#ebeff5" align="center" |12.00<br />
|Lunch<br />
|-<br />
|bgcolor="#ebeff5" align="center" |13.00 - 14.30<br />
|'''User experiences II'''<br />
|-<br />
|bgcolor="#ebeff5" align="center" |14.30 - 16.30 <br />
|'''Demo/Poster session I'''<br />
& coffe break <br />
|-<br />
|bgcolor="#ebeff5" align="center" |18.00 <br />
|'''Special Tour of the Old Town''' <br/>Guided by Prof. Meinzer<br />
|-<br />
|bgcolor="#ebeff5" align="center" |~19.00 <br />
|'''Get-together''' at [http://carltheodor-restaurant.de/ Carl Theodor Restaurant]<br />
|}<br />
<br />
=== Tuesday, April 28, 2015 ===<br />
:{| width=70% cellpadding=5 style="background-color:#ffffff; border:1px solid #BBB"<br />
|width=30% bgcolor="#ebeff5" align="center" |9.00 - 10.30<br />
|'''User experiences III''' <br />
|-<br />
|bgcolor="#ebeff5" align="center" |10.30 - 11.15<br />
|'''MITK status & future I'''<br />
Development process + user contribution (talk & open dicussion)<br />
|-<br />
|bgcolor="#ebeff5" align="center" |11.15 - 11.30<br />
|Coffee break<br />
|-<br />
|bgcolor="#ebeff5" align="center" |11.30 - 11.45<br />
|'''MITK status & future II'''<br />
Presenting the new release<br />
|-<br />
|bgcolor="#ebeff5" align="center" |11.45 - 12.30<br />
|'''MITK status & future III'''<br />
Future of MITK (talk & open dicussion)<br />
|-<br />
|bgcolor="#ebeff5" align="center" |12.30<br />
|Lunch<br />
|-<br />
|bgcolor="#ebeff5" align="center" |13.30 - 14.15<br />
|'''Discussion forum I'''<br />
|-<br />
|bgcolor="#ebeff5" align="center" |14.15 - 15.00 <br />
|'''Discussion forum II'''<br />
|-<br />
|bgcolor="#ebeff5" align="center" |15.00 - 15.15<br />
|Coffee break<br />
|-<br />
|bgcolor="#ebeff5" align="center" |15.15 - 16.30 <br />
|'''Demo/Poster session II'''<br />
& '''Meet the Developer'''<br />
|-<br />
|bgcolor="#ebeff5" align="center" |16.30 - 17.00 <br />
| '''Closing session'''<br />
|}<br />
<br />
== Confirmed talks ==<br />
; '''SurgeryPad - A mobile augmented reality application using MITK'''<br />
: M. Müller<br />
: mbits Steinbeis Transferzentrum, Heidelberg, Germany <br />
<br />
; '''Optical Navigation for Cranio-Maxillofacial (CMF) Surgery'''<br />
: L. Sanz&sup1; &sup2;, E. Marinetto&sup1; &sup2;, J. Pascau&sup1; &sup2; &sup3;<br />
:&sup1; Departamento de Bioingeniería e Ingeniería Aeroespacial, Universidad Carlos III de Madrid, Madrid, Spain<br />
:&sup2; Instituto de Investigación Sanitaria Gregorio Marañón, Madrid, Spain<br />
:&sup3; Centro de Investigación Biomédica en Red de Salud Mental (CIBERSAM), Madrid, Spain<br />
<br />
; '''The ImageExplorer'''<br />
: I. Wegner<br />
: Stryker Leibinger GmbH & Co. KG, Freiburg, Germany<br />
<br />
; '''Supporting the finite element modelling workflow with MITK Workbench'''<br />
: T. Fitze&sup1;, B. Helgason&sup2;, Y. Pauchard&sup1;<br />
: &sup1; Visual Computing Lab, Institute of Applied Information Technology, Zurich University of Applied Sciences ZHAW, Winterthur, Switzerland<br />
: &sup2; Institute for Biomechanics, ETH Zurich, Zurich, Switzerland<br />
<br />
; '''<nowiki>Mint Lesion: Example for an approved medical product based on MITK</nowiki>'''<br />
: M. Baumhauer<br />
: Mint Medical GmbH, Dossenheim, Germany<br />
<br />
; '''<nowiki>Model fitting of dynamic data: Implementation of perfusion models for radiotherapy analysis</nowiki>'''<br />
: C. Debus&sup1;, S. Diatschuk&sup2;, A. Fetzer&sup3;, A. Abdollahi&sup1;, R. Floca&sup2;<br />
: &sup1; Department of Translational Radiation Oncology, DKFZ, Heidelberg, Germany<br />
: &sup2; Division of Software development for Integrated Diagnostics and Therapy, DKFZ, Heidelberg, Germany<br />
: &sup3; Division of Medical and Biological Informatics, DKFZ, Heidelberg, Germany<br />
<br />
; '''<nowiki>Ultrasound Guided Navigation: Application Example in MITK</nowiki>'''<br />
: K. März&sup1;, A.M. Franz&sup1;, A. Seitel&sup1;, A. Winterstein&sup1;, R. Bendl&sup2;, S. Zelzer&sup3;, M. Nolden&sup3;, H.-P. Meinzer&sup3;, L.Maier-Hein&sup1;<br />
: &sup1; Junior Group Computer-assisted Interventions , DKFZ, Heidelberg, Germany<br />
: &sup2; Medical Informatics, Heilbronn University, Heilbronn, Germany<br />
: &sup3; Division of Medical and Biological Informatics, DKFZ, Heidelberg, Germany<br />
<br />
; '''MITK Diffusion'''<br />
: C. Goch<br />
: Junior Group Medical Image Computing, DKFZ, Heidelberg, Germany<br />
<br />
; '''OpenIGTLink integration in MITK''' (working title)<br />
: Martin Klemm<br />
: Offenburg University of Applied Sciences, Offenburg, Germany<br />
<br />
; '''NiftyView / MITK@UCL''' (working title)<br />
: M. Espak <br />
: Translational Imaging Group (TIG), University College London, London, UK<br />
<br />
== Confirmed demos & posters ==<br />
; '''<nowiki>CRIMSON: Towards a software environment for blood flow simulation for patient treatment and diagnosis</nowiki>'''<br />
: R. Khlebnikov<br />
: King's College London, London, UK<br />
<br />
; '''<nowiki>Brain-PILOT: MITK Plugin for Deep Brain Stimulation Planning</nowiki>'''<br />
: N. Hamzé, Caroline Essert<br />
: ICube laboratory, Université de Strasbourg, Strasbourg, France<br />
<br />
; '''<nowiki>GraphMIC: Easy Prototyping for Medical Image Computing Applications</nowiki>'''<br />
: A.E. Szalo, A. Zehner, C. Palm<br />
: Regensburg Medical Image Computing (ReMIC), Ostbayerische Technische Hochschule Regensburg, Regensburg, Germany<br />
<br />
; '''Cognition-guided mitral valve surgery using MITK'''<br />
: S. Engelhardt&sup1;, R. De Simone&sup2;, S. Al-Maisary&sup2;, I. Wolf&sup3;<br />
: &sup1; Division of Medical and Biological Informatics, DKFZ, Heidelberg, Germany<br />
: &sup2; Department of Cardiac Surgery, University of Heidelberg, Heidelberg, Germany<br />
: &sup3; Institute for Medical Informatics, Mannheim University of Applied Sciences, Mannheim, Germany <br />
<br />
; '''Regional Lung Ventilation Analysis using Temporally Resolved MRI'''<br />
: C. Kolb&sup1;, A. Wetscherek&sup2;, C. Rank&sup3;, T. Buzan&#8308;, J. Dinkel&#8309;, K. Maier-Hein&sup1;<br />
: &sup1; Junior Group Medical Image Computing, DKFZ, Heidelberg, Germany<br />
: &sup2; Division of Medical Physics in Radiology, DKFZ, Heidelberg, Germany<br />
: &sup3; Division of Medical Physics in Radiation Oncology, DKFZ, Heidelberg, Germany<br />
: &#8308; Thoraxklinik Heidelberg, Heidelberg, Germany<br />
: &#8309; Institute of Clinical Radiology, Munich, Germany<br />
<br />
; '''Datamanagement with MITK - MITK embedded in clinical and scientific workflows'''<br />
: A. Fetzer, S. Zelzer, M. Nolden<br />
: Division of Medical and Biological Informatics, DKFZ, Heidelberg, Germany<br />
<br />
; '''MITK Simulation'''<br />
: S. Kislinskiy<br />
: Division of Medical and Biological Informatics, DKFZ, Heidelberg, Germany<br />
<br />
<!--<br />
; <br />
: R. Floca<br />
: Division of Software development for Integrated Diagnostics and Therapy, DKFZ, Heidelberg, Germany<br />
--><br />
<br />
== Disussion topics ==<br />
; '''MITK and Scripting'''<br />
: R. Floca<br />
: Division of Software development for Integrated Diagnostics and Therapy, DKFZ, Heidelberg, Germany<br />
<br />
; '''MITK Modularization'''<br />
: S. Zelzer<br />
: Division of Medical and Biological Informatics, DKFZ, Heidelberg, Germany</div>AndreasFetzerhttp://mitk.org/w/index.php?title=MITK_Release_Cycle&diff=2448MITK Release Cycle2015-03-17T16:20:49Z<p>AndreasFetzer: </p>
<hr />
<div>__NOTOC__<br />
The MITK toolkit is released in snapshots every 3-4 months. The focus of the snapshots is the toolkit. They contain the source code and binary packages of an application for image viewing, measurement and segmentation.<br />
<br />
Apart from the snapshots several projects release specific application versions and configurations like [[DiffusionImaging|Diffusion Imaging]].<br />
<br />
<br />
== Release schedule ==<br />
{|class="wikitable" width=100% style="background-color:#ffffff;"<br />
! Name<br />
! Status<br />
! Release date<br />
! Feature freeze<br />
! Comments<br />
|-<br />
|bgcolor="#FFFF66" | [[MITK_ReleaseNotes_2015.05 | MITK 2015.03]] <br />
|bgcolor="#FFFF66" |Scheduled<br />
|bgcolor="#FFFF66" |''31.03.2015'' <br />
|bgcolor="#FFFF66" |''04.03.2015'' <br />
|bgcolor="#FFFF66" | CMake minimum version 3.2.1, Qt 5 support<br />
|-<br />
|bgcolor="#00cc00" | [[MITK_ReleaseNotes_2014.10 | MITK 2014.10]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |''27.11.2014'' <br />
|bgcolor="#00cc00" |''12.09.2014'' <br />
|bgcolor="#00cc00" | New Plugins for e.g. Remeshing, Movie/Screenshotmaker, ...<br />
|-<br />
|bgcolor="#00cc00" | [[MITK-ReleaseNotes-2014-03 | MITK 2014.03]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |''15.04.2014'' <br />
|bgcolor="#00cc00" |''12.03.2014'' <br />
|bgcolor="#00cc00" | Includes VTK 6 compatibility <br />
|-<br />
|bgcolor="#00cc00" | [[MITK-ReleaseNotes-2013-12| MITK 2013.12]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |''09.12.2013'' <br />
|bgcolor="#00cc00" |''12.11.2013'' <br />
|bgcolor="#00cc00" |Geometry redesign, mitk::ScalarType moved from float to double <br />
|-<br />
|bgcolor="#00cc00" |[[MITK-ReleaseNotes-2013-09 | MITK 2013.09]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |''07.10.2013'' <br />
|bgcolor="#00cc00" |''10.09.2013'' <br />
|bgcolor="#00cc00" | <br />
|-<br />
|bgcolor="#00cc00" |[[MITK-ReleaseNotes-2013-06 | MITK 2013.06]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |''28.06.2013'' <br />
|bgcolor="#00cc00" |''12.06.2013'' <br />
|bgcolor="#00cc00" | Moved to ITK4<br />
|-<br />
|bgcolor="#00cc00" |[[MITK-ReleaseNotes-2013-03 | MITK 2013.03]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |''31.03.2013'' <br />
|bgcolor="#00cc00" |''13.03.2013'' <br />
|bgcolor="#00cc00" | Redesigned interaction framwork<br />
|-<br />
|bgcolor="#00cc00" |[[MITK-ReleaseNotes-2012-12 | MITK 2012.12]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |''20.12.2012'' <br />
|bgcolor="#00cc00" |''28.11.2012'' <br />
|bgcolor="#00cc00" | Image-access via dedicated ImageAccessors<br />
|-<br />
|bgcolor="#00cc00" |[[MITK-ReleaseNotes-2012-09 | MITK 2012.09]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |''25.09.2012'' <br />
|bgcolor="#00cc00" |''04.09.2012'' <br />
|bgcolor="#00cc00" | Includes '''experimental''' DICOM Query/Retrieve <br />
|-<br />
|bgcolor="#00cc00" |[[MITK-ReleaseNotes-2012-06 | MITK 2012.06]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |15.06.2012 <br />
|bgcolor="#00cc00" |30.05.2012 <br />
|bgcolor="#00cc00" | <br />
|-<br />
|bgcolor="#8FFF6F" |MITK 2012.02 <br />
|bgcolor="#8FFF6F" |Released<br />
|bgcolor="#8FFF6F" |07.02.2012 <br />
|bgcolor="#8FFF6F" |01.02.2012 <br />
|bgcolor="#8FFF6F" |Test release, no binary packages, only [http://mitk.org/git/?p=MITK.git;a=shortlog;h=refs/heads/releases/2012-02 source] <br />
|}<br />
<br />
== Version scheme ==<br />
Toolkit versions of MITK consist of three components, defined in CMake/mitkSetupVariables.cmake and accessible through <code><nowiki>MITKConfig.cmake</nowiki></code> and <code><nowiki>mitkConfig.h</nowiki></code><br />
<br />
* '''MITK_VERSION_MAJOR''': Year of the release<br />
* '''MITK_VERSION_MINOR''': Month of the release (two digits)<br />
* '''MITK_VERSION_PATCH''': Numbering of releases in this month:<br />
** <code><nowiki>.0</nowiki></code> is the first one,<br />
** <code><nowiki>.2</nowiki></code> the second one (based on <code><nowiki>.0</nowiki></code>, not HEAD)<br />
** odd numbers specifying development versions<br />
<br />
<code><nowiki>2012.02.0</nowiki></code> is the first snapshot release in February 2012. Bugfix releases for this will be called <code><nowiki>2012.02.2</nowiki></code>, <code><nowiki>2012.02.4</nowiki></code> ... .<br />
<br />
<br />
=== Why is there no MITK 1.0? ===<br />
MITK as a toolkit is mature and usable for some time now. Somehow we "missed" releasing a specific version as 1.0 . Since 1.0 mostly has a political and cultural meaning (see [http://en.wikipedia.org/wiki/Versioning#Version_1.0_as_a_milestone Wikipedia] on this) we decided to skip 1.0 and move to a date-based versioning scheme for the toolkit.<br />
<br />
Still there will be 1.0 releases of applications based on MITK.<br />
<br />
<br />
=== Old versions ===<br />
The old versioning scheme created some confusion, so we will give a short overview on the existing versions so far:<br />
{| border="1" width=100% cellpadding="2" cellspacing="0"<br />
| 0.10, 0.12, 0.12.2, 0.14 <br />
| Official releases <br />
|-<br />
| 0.99.x <br />
| Snapshot releases that were intended as previews of MITK 1.0 . These are completely outdated, see above <br />
|-<br />
| 0.15.1 <br />
| This is the current master/trunk/HEAD release, following our old versioning scheme. As soon as we have completely moved to the new scheme this number will not appear anywhere anymore. <br />
|}<br />
<br />
<br />
=== Other versions ===<br />
Tags named "releases/snapshot-YYYYMMDD" are usually created for projects using MITK which need to permanently mark a specific version of MITK. Please be aware that these releases are not always fully tested since most projects only use parts of MITK.<br />
<br />
<br />
== Version control ==<br />
New versions will be put in branches named releases/2012-02 during development and tagged after the release. More detailed information will be put here and on the download page.</div>AndreasFetzerhttp://mitk.org/w/index.php?title=MITK_Release_Cycle&diff=2447MITK Release Cycle2015-03-17T15:23:45Z<p>AndreasFetzer: /* Release schedule */</p>
<hr />
<div>__NOTOC__<br />
The MITK toolkit is released in snapshots every 3-4 months. The focus of the snapshots is the toolkit. They contain the source code and binary packages of an application for image viewing, measurement and segmentation.<br />
<br />
Apart from the snapshots several projects release specific application versions and configurations like [[DiffusionImaging|Diffusion Imaging]].<br />
<br />
<br />
== Release schedule ==<br />
{|class="wikitable" width=100% style="background-color:#ffffff;"<br />
! Name<br />
! Status<br />
! Release date<br />
! Feature freeze<br />
! Comments<br />
|-<br />
|bgcolor="#FFFF66" | [[MITK-ReleaseNotes-2014-10 | MITK 2014.10]] <br />
|bgcolor="#FFFF66" |Released<br />
|bgcolor="#FFFF66" |''27.11.2014'' <br />
|bgcolor="#FFFF66" |''12.09.2014'' <br />
|bgcolor="#FFFF66" | <br />
|-<br />
|bgcolor="#00cc00" | [[MITK-ReleaseNotes-2014-03 | MITK 2014.03]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |''15.04.2014'' <br />
|bgcolor="#00cc00" |''12.03.2014'' <br />
|bgcolor="#00cc00" | Includes VTK 6 compatibility <br />
|-<br />
|bgcolor="#00cc00" | [[MITK-ReleaseNotes-2013-12| MITK 2013.12]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |''09.12.2013'' <br />
|bgcolor="#00cc00" |''12.11.2013'' <br />
|bgcolor="#00cc00" |Geometry redesign, mitk::ScalarType moved from float to double <br />
|-<br />
|bgcolor="#00cc00" |[[MITK-ReleaseNotes-2013-09 | MITK 2013.09]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |''07.10.2013'' <br />
|bgcolor="#00cc00" |''10.09.2013'' <br />
|bgcolor="#00cc00" | <br />
|-<br />
|bgcolor="#00cc00" |[[MITK-ReleaseNotes-2013-06 | MITK 2013.06]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |''28.06.2013'' <br />
|bgcolor="#00cc00" |''12.06.2013'' <br />
|bgcolor="#00cc00" | Moved to ITK4<br />
|-<br />
|bgcolor="#00cc00" |[[MITK-ReleaseNotes-2013-03 | MITK 2013.03]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |''31.03.2013'' <br />
|bgcolor="#00cc00" |''13.03.2013'' <br />
|bgcolor="#00cc00" | Redesigned interaction framwork<br />
|-<br />
|bgcolor="#00cc00" |[[MITK-ReleaseNotes-2012-12 | MITK 2012.12]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |''20.12.2012'' <br />
|bgcolor="#00cc00" |''28.11.2012'' <br />
|bgcolor="#00cc00" | Image-access via dedicated ImageAccessors<br />
|-<br />
|bgcolor="#00cc00" |[[MITK-ReleaseNotes-2012-09 | MITK 2012.09]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |''25.09.2012'' <br />
|bgcolor="#00cc00" |''04.09.2012'' <br />
|bgcolor="#00cc00" | Includes '''experimental''' DICOM Query/Retrieve <br />
|-<br />
|bgcolor="#00cc00" |[[MITK-ReleaseNotes-2012-06 | MITK 2012.06]] <br />
|bgcolor="#00cc00" |Released<br />
|bgcolor="#00cc00" |15.06.2012 <br />
|bgcolor="#00cc00" |30.05.2012 <br />
|bgcolor="#00cc00" | <br />
|-<br />
|bgcolor="#8FFF6F" |MITK 2012.02 <br />
|bgcolor="#8FFF6F" |Released<br />
|bgcolor="#8FFF6F" |07.02.2012 <br />
|bgcolor="#8FFF6F" |01.02.2012 <br />
|bgcolor="#8FFF6F" |Test release, no binary packages, only [http://mitk.org/git/?p=MITK.git;a=shortlog;h=refs/heads/releases/2012-02 source] <br />
|}<br />
<br />
== Version scheme ==<br />
Toolkit versions of MITK consist of three components, defined in CMake/mitkSetupVariables.cmake and accessible through <code><nowiki>MITKConfig.cmake</nowiki></code> and <code><nowiki>mitkConfig.h</nowiki></code><br />
<br />
* '''MITK_VERSION_MAJOR''': Year of the release<br />
* '''MITK_VERSION_MINOR''': Month of the release (two digits)<br />
* '''MITK_VERSION_PATCH''': Numbering of releases in this month:<br />
** <code><nowiki>.0</nowiki></code> is the first one,<br />
** <code><nowiki>.2</nowiki></code> the second one (based on <code><nowiki>.0</nowiki></code>, not HEAD)<br />
** odd numbers specifying development versions<br />
<br />
<code><nowiki>2012.02.0</nowiki></code> is the first snapshot release in February 2012. Bugfix releases for this will be called <code><nowiki>2012.02.2</nowiki></code>, <code><nowiki>2012.02.4</nowiki></code> ... .<br />
<br />
<br />
=== Why is there no MITK 1.0? ===<br />
MITK as a toolkit is mature and usable for some time now. Somehow we "missed" releasing a specific version as 1.0 . Since 1.0 mostly has a political and cultural meaning (see [http://en.wikipedia.org/wiki/Versioning#Version_1.0_as_a_milestone Wikipedia] on this) we decided to skip 1.0 and move to a date-based versioning scheme for the toolkit.<br />
<br />
Still there will be 1.0 releases of applications based on MITK.<br />
<br />
<br />
=== Old versions ===<br />
The old versioning scheme created some confusion, so we will give a short overview on the existing versions so far:<br />
{| border="1" width=100% cellpadding="2" cellspacing="0"<br />
| 0.10, 0.12, 0.12.2, 0.14 <br />
| Official releases <br />
|-<br />
| 0.99.x <br />
| Snapshot releases that were intended as previews of MITK 1.0 . These are completely outdated, see above <br />
|-<br />
| 0.15.1 <br />
| This is the current master/trunk/HEAD release, following our old versioning scheme. As soon as we have completely moved to the new scheme this number will not appear anywhere anymore. <br />
|}<br />
<br />
<br />
=== Other versions ===<br />
Tags named "releases/snapshot-YYYYMMDD" are usually created for projects using MITK which need to permanently mark a specific version of MITK. Please be aware that these releases are not always fully tested since most projects only use parts of MITK.<br />
<br />
<br />
== Version control ==<br />
New versions will be put in branches named releases/2012-02 during development and tagged after the release. More detailed information will be put here and on the download page.</div>AndreasFetzerhttp://mitk.org/w/index.php?title=MITK_Users_Meeting_2015&diff=2368MITK Users Meeting 20152015-01-12T14:24:43Z<p>AndreasFetzer: </p>
<hr />
<div>__NOTOC__<br />
=== April 27-28, 2015 in Heidelberg, Germany ===<br />
<br />
'''''Please note this is a draft, but the meeting will happen on that day!'''''<br />
<br />
[[File:heidelberg.jpg|right|frameless|250px]]<br />
We are happy to announce the first MITK Users' Meeting in Heidelberg!<br />
<br />
Take the opportunity to communicate directly with other users of the MITK community and the developers of MITK.<br />
<br />
We kindly invite you to attend this workshop-style event and encourage you contribute a talk or demonstration. Take the chance to spread the word about your MITK-based projects and get valuable feedback from the community.<br />
<br />
Besides a workshop agenda, plenty of time will be reserved for open discussions and individual meetings.<br />
<br />
<br />
== Why should I attend? ==<br />
[[File:MITKUsersMeeting.png|right|frameless|240px]]<br />
* Help shape the future of MITK<br />
** Discuss possible new features and help us determine priorities <br />
** Give input in regards to new capabilities<br />
** Learn more about how to contribute to MITK <br />
* Get information about current developments and our roadmap<br />
* Attend the workshops and tutorials and get input on how to maximize your profit from using MITK<br />
* Present your MITK-based projects and reach other users in the field who might be interested.<br />
* Meet other users and the developers of MITK and get the chance of new cooperation opportunities.<br />
<br />
<br />
== How can I get involved? ==<br />
There are several ways to get involved in the meeting:<br />
* Present your MITK-based work and projects: submit a short abstract and indicate whether you would like to present with a '''talk''', a '''poster''' or a '''software demonstration'''. If you need special hardware for your demonstration, e.g. a tracking device, please let us know.<br />
* Help us shape the discussions: let us know about topics you would like to discuss, e.g. future directions, contribution process, or specific technical aspects. These could be both '''plenary discussions''' or '''breakout sessions'''.<br />
* Other contributions that complement the meeting.<br />
<br />
Or you can '''just attend''' and be part of it!<br />
<br />
<br />
== Registration for Participation ==<br />
The attendance at the Users' Meeting is free. Please write us a mail with your contact details to [mailto:mitk@dkfz-heidelberg.de mitk@dkfz-heidelberg.de].<br />
<br />
<br />
== Contribution Submission ==<br />
<br />
Please send your short abstract (~150 words) to [mailto:mitk@dkfz-heidelberg.de mitk@dkfz-heidelberg.de] and provide following information:<br />
<br />
* Title of the contribution<br />
* Names and affiliations (name of institute, city, country) of the demonstrators<br />
* Presentation type (talk, poster or demonstration)<br />
* Short description of the contribution<br />
<br />
<!--<br />
<br />
== Proposed Contributions ==<br />
--><br />
<br />
== Important Dates ==<br />
* Deadline for submissions: '''February 20th, 2015'''<br />
* Notification of acceptance and publication of final meeting schedule: '''March 16th, 2015'''<br />
* Deadline for registration (free): '''March 31th'''<br />
* Meeting: '''April 27-28, 2015'''<br />
<br />
<br />
[[File:dkfz.jpg|right|frameless|260px]]<br />
== Location ==<br />
German Cancer Research Center (DKFZ)<br />
Communication Center<br />
Im Neuenheimer Feld 280<br />
69120 Heidelberg, Germany<br />
<br />
Directions can be found [http://dkfz.de/en/dkfz/anfahrt.html here].<br />
<br />
<br />
== Contact ==<br />
For further questions please contact ''Mailadresse'' or [mailto:jasmin.metzger@dkfz-heidelberg.de Jasmin Metzger] from the Division of Medical and Biological Informatics.</div>AndreasFetzerhttp://mitk.org/w/index.php?title=MITK_Users_Meeting_2015&diff=2367MITK Users Meeting 20152015-01-12T14:15:01Z<p>AndreasFetzer: /* Why should I attend? */</p>
<hr />
<div>__NOTOC__<br />
=== April 27-28, 2015 in Heidelberg, Germany ===<br />
<br />
'''''Please note this is a draft, but the meeting will happen on that day!'''''<br />
<br />
[[File:heidelberg.jpg|right|frameless|250px]]<br />
We are happy to announce the first MITK Users' Meeting in Heidelberg!<br />
<br />
Take the opportunity to communicate directly with other users of the MITK community and the developers of MITK.<br />
<br />
We kindly invite you to attend this workshop-style event and encourage you contribute a talk or demonstration. Take the chance to spread the word about your MITK-based projects and get valuable feedback from the community.<br />
<br />
Besides a workshop agenda, plenty of time will be reserved for open discussions and individual meetings.<br />
<br />
<br />
== Why should I attend? ==<br />
[[File:MITKUsersMeeting.png|right|frameless|240px]]<br />
* Help shape the future of MITK<br />
** Discuss possible new features and help us determine priorities <br />
** Give input in regards to new capabilities<br />
** Learn more about how to contribute to MITK <br />
* Get information about current developments and our roadmap<br />
* Attend the workshops and tutorials and get input on how to maximize your profit from using MITK<br />
* Present your MITK-based projects and reach other users in the field who might be interested.<br />
* Meet other users and the developers of MITK and get the chance of new cooperation opportunities.<br />
<br />
== How can I get involved? ==<br />
There are several ways to get involved in the meeting:<br />
* Present your MITK-based work and projects: submit a short abstract and indicate whether you would like to present with a '''talk''', a '''poster''' or a '''software demonstration'''. If you need special hardware for your demonstration, e.g. a tracking device, please let us know.<br />
* Help us shape the discussions: let us know about topics you would like to discuss, e.g. future directions, contribution process, or specific technical aspects. These could be both '''plenary discussions''' or '''breakout sessions'''.<br />
* Other contributions that complement the meeting.<br />
* '''Just attend''' and be part of it!<br />
<br />
<br />
== Registration for Participation ==<br />
The attendance at the Users' Meeting is free. Please write us a mail with your contact details to [mailto:mitk@dkfz-heidelberg.de mitk@dkfz-heidelberg.de].<br />
<br />
<br />
== Contribution Submission ==<br />
<br />
Please send your short abstract (~150 words) to [mailto:mitk@dkfz-heidelberg.de mitk@dkfz-heidelberg.de] and provide following information:<br />
<br />
* Title of the contribution<br />
* Names and affiliations (name of institute, city, country) of the demonstrators<br />
* Presentation type (talk, poster or demonstration)<br />
* Short description of the contribution<br />
<br />
<!--<br />
<br />
== Proposed Contributions ==<br />
--><br />
<br />
== Important Dates ==<br />
* Deadline for submissions: '''February 20th, 2015'''<br />
* Notification of acceptance and publication of final meeting schedule: '''March 16th, 2015'''<br />
* Deadline for registration (free): '''March 31th'''<br />
* Meeting: '''April 27-28, 2015'''<br />
<br />
<br />
[[File:dkfz.jpg|right|frameless|260px]]<br />
== Location ==<br />
German Cancer Research Center (DKFZ)<br />
Communication Center<br />
Im Neuenheimer Feld 280<br />
69120 Heidelberg, Germany<br />
<br />
Directions can be found [http://dkfz.de/en/dkfz/anfahrt.html here].<br />
<br />
<br />
== Contact ==<br />
For further questions please contact ''Mailadresse'' or [mailto:jasmin.metzger@dkfz-heidelberg.de Jasmin Metzger] from the Division of Medical and Biological Informatics.</div>AndreasFetzerhttp://mitk.org/w/index.php?title=MITK_Users_Meeting_2015&diff=2366MITK Users Meeting 20152015-01-12T14:13:04Z<p>AndreasFetzer: /* Why should I attend? */</p>
<hr />
<div>__NOTOC__<br />
=== April 27-28, 2015 in Heidelberg, Germany ===<br />
<br />
'''''Please note this is a draft, but the meeting will happen on that day!'''''<br />
<br />
[[File:heidelberg.jpg|right|frameless|250px]]<br />
We are happy to announce the first MITK Users' Meeting in Heidelberg!<br />
<br />
Take the opportunity to communicate directly with other users of the MITK community and the developers of MITK.<br />
<br />
We kindly invite you to attend this workshop-style event and encourage you contribute a talk or demonstration. Take the chance to spread the word about your MITK-based projects and get valuable feedback from the community.<br />
<br />
Besides a workshop agenda, plenty of time will be reserved for open discussions and individual meetings.<br />
<br />
<br />
== Why should I attend? ==<br />
[[File:MITKUsersMeeting.png|right|frameless|240px]]<br />
* Help shape the future of MITK<br />
** Discuss possible new features and help us determine priorities <br />
** Give input in regards to new capabilities<br />
** Learn more about how to contribute to MITK <br />
* Get information about current developments and our roadmap<br />
* Attend the workshops and tutorials and get input on how to maximize your profit from using MITK<br />
* Present your MITK-based projects and reach other users in the field who might be interested.<br />
* Meet other users and the developer of MITK and get the chance of new cooperation opportunities.<br />
<br />
== How can I get involved? ==<br />
There are several ways to get involved in the meeting:<br />
* Present your MITK-based work and projects: submit a short abstract and indicate whether you would like to present with a '''talk''', a '''poster''' or a '''software demonstration'''. If you need special hardware for your demonstration, e.g. a tracking device, please let us know.<br />
* Help us shape the discussions: let us know about topics you would like to discuss, e.g. future directions, contribution process, or specific technical aspects. These could be both '''plenary discussions''' or '''breakout sessions'''.<br />
* Other contributions that complement the meeting.<br />
* '''Just attend''' and be part of it!<br />
<br />
<br />
== Registration for Participation ==<br />
The attendance at the Users' Meeting is free. Please write us a mail with your contact details to [mailto:mitk@dkfz-heidelberg.de mitk@dkfz-heidelberg.de].<br />
<br />
<br />
== Contribution Submission ==<br />
<br />
Please send your short abstract (~150 words) to [mailto:mitk@dkfz-heidelberg.de mitk@dkfz-heidelberg.de] and provide following information:<br />
<br />
* Title of the contribution<br />
* Names and affiliations (name of institute, city, country) of the demonstrators<br />
* Presentation type (talk, poster or demonstration)<br />
* Short description of the contribution<br />
<br />
<!--<br />
<br />
== Proposed Contributions ==<br />
--><br />
<br />
== Important Dates ==<br />
* Deadline for submissions: '''February 20th, 2015'''<br />
* Notification of acceptance and publication of final meeting schedule: '''March 16th, 2015'''<br />
* Deadline for registration (free): '''March 31th'''<br />
* Meeting: '''April 27-28, 2015'''<br />
<br />
<br />
[[File:dkfz.jpg|right|frameless|260px]]<br />
== Location ==<br />
German Cancer Research Center (DKFZ)<br />
Communication Center<br />
Im Neuenheimer Feld 280<br />
69120 Heidelberg, Germany<br />
<br />
Directions can be found [http://dkfz.de/en/dkfz/anfahrt.html here].<br />
<br />
<br />
== Contact ==<br />
For further questions please contact ''Mailadresse'' or [mailto:jasmin.metzger@dkfz-heidelberg.de Jasmin Metzger] from the Division of Medical and Biological Informatics.</div>AndreasFetzerhttp://mitk.org/w/index.php?title=Bug_Squashing_Seminars&diff=2364Bug Squashing Seminars2015-01-12T07:43:50Z<p>AndreasFetzer: /* 2014 seminars */</p>
<hr />
<div>__NOTOC__<br />
<br />
The Division of Medical and Biological Informatics at the German Cancer Research Center holds a bug squashing party once a week. We start this group event with short seminars on a current developments or concepts of general interest to MITK developers.<br />
<br />
This page is to collect the seminar slides for people who could not attend or who want to lookup anything.<br />
<br />
<br />
<pre><nowiki><br />
All slides should be added here as PDF files!<br />
<br />
No PowerPoint slides!!<br />
</nowiki></pre><br />
<br />
<br />
== 2015 seminars ==<br />
{|class="wikitable" width=100% style="background-color:#ffffff;" <br />
! Date<br />
! PDF link<br />
! Presenter <br />
|-<br />
| 2015-01-07<br />
| [[Media:BugSquashingSeminars$Overlays_in_MITK.pdf|Overlays in MITK]] <br />
| Christoph Kolb<br />
|}<br />
<br />
== 2014 seminars ==<br />
{|class="wikitable" width=100% style="background-color:#ffffff;" <br />
! Date<br />
! PDF link<br />
! Presenter <br />
|-<br />
| 2014-12-04<br />
| [[Media:ImageMapper.pdf|ImageVtkMapper2D]] <br />
| Thomas Kilgus<br />
|-<br />
| 2014-11-19<br />
| [[Media:DoubleDispatch.pdf|DoubleDispatch]] <br />
| Sandy Engelhardt<br />
|-<br />
| 2014-10-29<br />
| [[Media:BugSquashingSeminars$BS Constant.pdf|Constant]] <br />
| Esther Wild <br />
|-<br />
| 2014-10-08 <br />
| [[Media:BugSquashingSeminars$Sorting_Algorithms.pdf|Sorting_Algorithms]] <br />
| Nils Lichtenberg <br />
|-<br />
| 2014-10-01 <br />
| [[Media:BugSquashingSeminars$ViewNavigator.pdf|View Navigator]] <br />
| Caspar Goch <br />
|-<br />
| 2014-09-17 <br />
| [[Media:BugSquashingSeminars$MitkPython.pdf|MITK Python]] <br />
| Eric Heim <br />
|-<br />
| 2014-09-10 <br />
| [[Media:BugSquashingSeminars$2014-09-10-Strategy-Pattern.pdf|Strategy Pattern]] <br />
| Matthias Eisenmann <br />
|-<br />
| 2014-09-03 <br />
| [[Media:BugSquashingSeminars$2014-09-03-Qt-threading-in-MITK.pdf|Qt-threading-in-MITK]] <br />
| Andreas Fetzer <br />
|-<br />
| 2014-09-03 <br />
| [[Media:BugSquashingSeminars$bugsquashing_DesignPatternState.pdf|Design Pattern: State]] <br />
| Jasmin Metzger <br />
|-<br />
| 2014-07-02 <br />
| [[Media:BugSquashingSeminars$2014-07-02-The_mystery_of_typename.pdf|The mystery of Typename]] <br />
| Michael Goetz <br />
|-<br />
| 2014-06-25 <br />
| [[Media:BugSquashingSeminars$ProperUseOfMitkPointSet.pdf|Proper use of mitk::PointSet]] <br />
| Tobias Norajitra <br />
|-<br />
| 2014-06-18 <br />
| [[Media:BugSquashingSeminars$MITK-basictypes.pdf|MITK basic type restructuring]] <br />
| Sebastian Wirkert <br />
|-<br />
| 2014-06-04 <br />
| [[Media:BugSquashingSeminars$MITK-Persistence.pdf|MITK Persistence]] <br />
| Alfred Franz <br />
|-<br />
| 2014-05-28 <br />
| [[Media:BugSquashingSeminars$2014-05-28-bugsquashing-NewGeometryConcept.pdf|New Geometry Concept]] <br />
| Esther Wild <br />
|-<br />
| 2014-05-20 <br />
| [[Media:BugSquashingSeminars$BS-2014-05-20.pdf|Usage of CTK Commandline Functionality in MITK]] <br />
| Christian Weber <br />
|-<br />
| 2014-05-14 <br />
| [[Media:BugSquashingSeminars$2014-05-14-bugsquashing-functorsAndFor_each.pdf|Functors and for_each]] <br />
| Christoph Kolb <br />
|-<br />
| 2014-04-30 <br />
| [[Media:BugSquashingSeminars$14-04-30-bugsquashing-Qt-Size-Policy.pdf|Qt Size Policy]] <br />
| Michael Brehler <br />
|-<br />
| 2014-04-02 <br />
| [[Media:BugSquashingSeminars$2014-04-02-Bugsquashing-STLremove.pdf|STL erase-remove idiom]] <br />
| Joseph Görres <br />
|-<br />
| 2014-03-26 <br />
| [[Media:BugSquashingSeminars$RemeshingPlugin.pdf|Remeshing Plugin]] <br />
| Stefan Kislinskiy <br />
|-<br />
| 2014-03-05 <br />
| [[Media:BugSquashingSeminars$InteractionTestingFramework.pdf|Interaction testing framework]] <br />
| Tobias Schröder <br />
|-<br />
| 2014-02-19 <br />
| [[Media:BugSquashingSeminars$CppUnitFrameworkSeminar.pdf|Cpp Unit Testing Framework in MITK]] <br />
| Thomas Kilgus <br />
|-<br />
| 2014-02-05 <br />
| [[Media:BugSquashingSeminars$cpp-inline-functions-seminar.pdf|C++ inline functions]] <br />
| Tamara Wiebe <br />
|-<br />
| 2014-01-29 <br />
| [[Media:BugSquashingSeminars$Pointers_vs_References.pdf|Pointers vs. References]] <br />
| Moritz Petry <br />
|-<br />
| 2014-01-15 <br />
| ITK Registration Framework <br />
| Arthur Teimourian <br />
|}<br />
<br />
== 2013 seminars ==<br />
{|class="wikitable" width=100% style="background-color:#ffffff;" <br />
! Date<br />
! PDF link<br />
! Presenter<br />
|-<br />
| 2013-12-04 <br />
| [[Media:BugSquashingSeminars$Bugsquashing_OpenCV.pdf|OpenCV basics and some comments on classification]] <br />
| Josiah Blöcher <br />
|-<br />
| 2013-12-27 <br />
| [[Media:BugSquashingSeminars$2013-11-27-bugsquashing-BlueBerrySelectionService.pdf|BlueBerry Selection Service]] <br />
| Daniel Knorr <br />
|-<br />
| 2013-11-20 <br />
| [[Media:BugSquashingSeminars$RSA.pdf|RSA - Asymmetric Cryptography]] <br />
| Lars Woitzik <br />
|-<br />
| 2013-11-13 <br />
| [[Media:BugSquashingSeminars$13-11-13-bugsquashing-contourmodel.pdf|ContourModel & ContourModelSet]] <br />
| Nico Riecker <br />
|-<br />
| 2013-11-06 <br />
| [[Media:BugSquashingSeminars$13-11-06-bugsquashing-StringComparison.pdf|(Case Insensitive) String Comparison in C++]] <br />
| Adrian Winterstein <br />
|-<br />
| 2013-10-16 <br />
| [[Media:BugSquashingSeminars$2013-10-16-Bugssquashing-TimeGeometry.pdf|Time Geometries]] <br />
| Michael Goetz <br />
|-<br />
| 2013-10-02 <br />
| [[Media:BugSquashingSeminars$2013-10-02-bugsquashing-smartpointer.pdf|ITK vs. VTK Smartpointers]] <br />
| Andreas Fetzer <br />
|-<br />
| 2013-09-25 <br />
| [[Media:BugSquashingSeminars$2013-09-24-bugsquashing-openGL.pdf|OpenGL in MITK]] <br />
| Sandy Engelhardt <br />
|-<br />
| 2013-09-11 <br />
| [[Media:BugSquashingSeminars$APIDocumentation.pdf|API Documentation]] <br />
| Alfred Franz <br />
|-<br />
| 2013-09-04 <br />
| [[Media:BugSquashingSeminars$2013-09-04-bugsquashing-static.pdf|The C++ Keyword static]] <br />
| Stefan Kislinskiy <br />
|-<br />
| 2013-08-21 <br />
| [[Media:BugSquashingSeminars$Code_coverage.pdf|Test Coverage]] <br />
| Eric Heim <br />
|-<br />
| 2013-08-07 <br />
| [[Media:BugSquashingSeminars$vtk6-bs.pdf|VTK 6 Introduction]] <br />
| Christoph Kolb <br />
|-<br />
| 2013-07-31 <br />
| [[Media:BugSquashingSeminars$2013-07-31-buildsystem.pdf|Buildsystem and CMake]] <br />
| Caspar Goch <br />
|-<br />
| 2013-07-17 <br />
| [[Media:BugSquashingSeminars$2013-07-17-Doxygen.pdf|MITK and Doxygen]] and [[Media:BugSquashingSeminars$2013-07-17-DoxyReference.pdf|Doxygen Reference]] <br />
| Keno März <br />
|-<br />
| 2013-07-10 <br />
| [[Media:BugSquashingSeminars$2013-07-10-git-rerere.pdf|git rerere]] <br />
| Andreas Fetzer <br />
|-<br />
| 2013-07-03 <br />
| [[Media:BugSquashingSeminars$2013-07-03-Bugsquashing_FloatingPoint.pdf|Problems with Floating Point Operations]] <br />
| Michael Goetz <br />
|-<br />
| 2013-06-26 <br />
| [[Media:BugSquashingSeminars$ITK_Functors.pdf|Functors in ITK]] <br />
| Tobias Norajitra <br />
|-<br />
| 2013-06-12 <br />
| [[Media:BugSquashingSeminars$13-06-12-bugsquashing-ITKImages.pdf|Using ITK images in MITK]] <br />
| Joseph Görres <br />
|-<br />
| 2013-06-05 <br />
| [[Media:BugSquashingSeminars$13-06-05-bugsquashing-opencl.pdf|ITKv4 GPU acceleration: OpenCL]] <br />
| Michael Brehler <br />
|-<br />
| 2013-05-08 <br />
| [[Media:BugSquashingSeminars$bugsquashing_TypeCasting.pdf|Type casting]] <br />
| Jasmin Metzger <br />
|-<br />
| 2013-05-15 <br />
| [[Media:BugSquashingSeminars$2013-05-15-VariadicTemplates.pdf|C++ 11 VariadicTemplates]] <br />
| Markus Fangerau <br />
|-<br />
| 2013-04-24 <br />
| [[Media:BugSquashingSeminars$13-04-24-bugsquashing-TemporaryObjects.pdf|Temporary objects]] <br />
| Diana Wald <br />
|-<br />
| 2013-04-03 <br />
| [[Media:BugSquashingSeminars$ITK4_Overview.pdf|ITK 4 Overview]] <br />
| Sven Mersmann <br />
|-<br />
| 2013-03-13 <br />
| [[Media:BugSquashingSeminars$CTest.pdf| CTest]] <br />
| Thomas Kilgus <br />
|-<br />
| 2013-02-13 <br />
| [[Media:BugSquashingSeminars$PlatformProjectInteraction.pdf| Platform project: Interaction]] <br />
| Christian Weber <br />
|-<br />
| 2013-02-06 <br />
| [[Media:BugSquashingSeminars$Git_reflog.pdf|Git reflog]] <br />
| Sandy Engelhardt <br />
|-<br />
| 2013-01-30 <br />
| [[Media:BugSquashingSeminars$STLAlgorithms_Functors.pdf|STL Algorithms Functors]] <br />
| Jan Hering <br />
|-<br />
| 2013-01-16 <br />
| [[Media:BugSquashingSeminars$GeometryClasses.pdf|Geometry Classes]] <br />
| Bastian Graser <br />
|}<br />
<br />
<br />
== 2012 seminars ==<br />
{|class="wikitable" width=100% style="background-color:#ffffff;" <br />
! Date<br />
! PDF link<br />
! Presenter<br />
|-<br />
| 2012-12-12 <br />
| [[Media:BugSquashingSeminars$Constructors.pdf|Constructors]] <br />
| Frederik Drosdzol <br />
|-<br />
| 2012-12-05 <br />
| [[Media:BugSquashingSeminars$QtWebBridge.pdf|Qt Web Bridge]] <br />
| Moritz Petry <br />
|-<br />
| 2012-11-28 <br />
| [[Media:BugSquashingSeminars$Design-Patter-MVVM.pdf| Design Pattern MVVM]] <br />
| Lars Woitzik <br />
|-<br />
| 2012-11-21 <br />
| [[Media:BugSquashingSeminars$QtDPointer.pdf|D Pointer und Qt]] <br />
| Jonas Cordes <br />
|-<br />
| 2012-11-15 <br />
| [[Media:BugSquashingSeminars$GitDetachedHEAD.pdf|Git Detached HEAD]] <br />
| Andreas Fetzer <br />
|-<br />
| 2012-10-30 <br />
| [[Media:BugSquashingSeminars$Pimpl.pdf|PIMPL Idiom]] <br />
| Alexander Seitel <br />
|-<br />
| 2012-10-24 <br />
| [[Media:BugSquashingSeminars$Valgrind.pdf|Valgrind]] <br />
| Eric Heim <br />
|-<br />
| 2012-10-17 <br />
| [[Media:BugSquashingSeminars$bug-squashing_image-accessors.pdf|Image accessors in MITK]] <br />
| Joseph Görres <br />
|-<br />
| 2012-10-03 <br />
| [[Media:BugSquashingSeminars$CustomViewerApplicationExample.pptx|CustomViewer Application Example]] <br />
| Tobias Norajitra <br />
|-<br />
| 2012-09-26 <br />
| [[Media:BugSquashingSeminars$BlueBerryExamples.pdf|BlueBerry Examples]] <br />
| Michael Brehler <br />
|-<br />
| 2012-09-05 <br />
| [[Media:BugSquashingSeminars$ExceptionHandlingInMITK.pdf|Exception handling in MITK]] <br />
| Alfred Franz <br />
|-<br />
| 2012-08-29 <br />
| [[Media:BugSquashingSeminars$LoggingInMITK.pdf|Logging in MITK]] <br />
| Alfred Franz <br />
|-<br />
| 2012-08-22 <br />
| [[Media:BugSquashingSeminars$Microservices1.pdf|Microservices I: Declearing Services]] <br />
| Keno März <br />
|-<br />
| 2012-08-22 <br />
| [[Media:BugSquashingSeminars$Microservices2.pdf|Microservices II: QmitkServiceListWidget]] <br />
| Keno März <br />
|-<br />
| 2012-06-27 <br />
| [[Media:BugSquashingSeminars$BugSquashingSeminar_Applications.pdf|Customizing your own MITK application]] <br />
| Caspar Goch <br />
|-<br />
| 2012-06-06 <br />
| [[Media:BugSquashingSeminars$PointerArithmetic.pdf|Pointer Arithmetic]] <br />
| Diana Wald <br />
|-<br />
| 2012-05-02 <br />
| [[Media:BugSquashingSeminars$ITKBarriers.pdf|Threading with ITK Barriers]] <br />
| Sven Mersmann <br />
|-<br />
| 2012-04-18 <br />
| [[Media:BugSquashingSeminars$avoid_long_functions.pdf|Avoid long functions]] <br />
| Stefan Kislinskiy <br />
|-<br />
| 2012-04-11 <br />
| [[Media:BugSquashingSeminars$tbb.pdf|Intel Threading Building Blocks]] <br />
| Michael Mueller <br />
|-<br />
| 2012-04-04 <br />
| [[Media:BugSquashingSeminars$openmp.pdf|OpenMP]] <br />
| Eric Heim <br />
|-<br />
| 2012-03-08 <br />
| [[Media:BugSquashingSeminars$visual-studio-plugins.pdf|Visual Studio Plugins]] <br />
| Franciszek E. Binczyk <br />
|-<br />
| 2012-03-08 <br />
| [[Media:BugSquashingSeminars$CreateYourOwnMITKDatatype.pdf|Create your own MITK Datatype]] <br />
| Bastian Graser <br />
|-<br />
| 2012-02-22 <br />
| [[Media:BugSquashingSeminars$BSQ_git_bisect_export.pdf|Git Bisect]] <br />
| Jan Hering <br />
|-<br />
| 2012-02-15 <br />
| [[Media:BugSquashingSeminars$Bugsquashing_git_stash.pdf|Git Stash]] <br />
| Andreas Fetzer <br />
|-<br />
| 2012-02-08 <br />
| [[Media:BugSquashingSeminars$gitk.pdf|gitk]] <br />
| Jonas Cordes <br />
|-<br />
| 2012-01-25 <br />
| [[Media:BugSquashingSeminars$GitRebaseInteractive.pdf|Git Rebase Interactive]] <br />
| Tobias Schroeder <br />
|-<br />
| 2012-01-11 <br />
| [[Media:BugSquashingSeminars$UIWidgetsInMITK_external.pdf|UI Widgets in MITK]] <br />
| Alfred Franz <br />
|}<br />
<br />
<br />
== 2011 seminars ==<br />
{|class="wikitable" width=100% style="background-color:#ffffff;" <br />
! Date <br />
! PDF link<br />
! Presenter<br />
|-<br />
| 2011-12-14 <br />
| [[Media:BugSquashingSeminars$11-12-14-bugsquashing-mergingbundles.pdf|Merging multiple bundles into one]] <br />
| Caspar Goch <br />
|-<br />
| 2011-11-30 <br />
| [[Media:BugSquashingSeminars$11-11-30-bugsquashing-GitGUI.pdf|Git GUI]] <br />
| Alexander Seitel <br />
|-<br />
| 2011-11-23 <br />
| [[Media:BugSquashingSeminars$BugsqGIT.pdf|Git Workflows: #1 Bug integration]] <br />
| Thomas Kilgus <br />
|-<br />
| 2011-11-16 <br />
| [[Media:BugSquashingSeminars$CPack.pdf|CPack]] <br />
| Peter Neher <br />
|-<br />
| 2011-11-09 <br />
| [[Media:BugSquashingSeminars$Bug-squashing_Evaluation.pdf|Bug Squashing Evaluation]] <br />
| Lena Maier-Hein <br />
|-<br />
| 2011-10-19 <br />
| [[Media:BugSquashingSeminars$Design_Pattern_Observer_Whiteboard.pdf|Design Patterns: Observer Whiteboard]] <br />
| Jasmin Metzger <br />
|-<br />
| 2011-09-28 <br />
| [[Media:BugSquashingSeminars$BuqSquashing-UnusualBugs.pdf|Unusual bugs]] <br />
| Bastian Graser <br />
|-<br />
| 2011-08-24 <br />
| [[Media:BugSquashingSeminars$BugSquashing_ResourceProbe_ITK.pdf|ITK ResourceProbe]] <br />
| Jan Hering <br />
|-<br />
| 2011-08-17 <br />
| [[Media:BugSquashingSeminars$BoostCompressedPair.pdf|Boost Compressed Pair]] <br />
| Raluca Pahontu <br />
|-<br />
| 2011-08-10 <br />
| [[Media:BugSquashingSeminars$bugsquashingseminar_const_20110810.pdf|Const correctness]] <br />
| Clarence Bartenhagen <br />
|-<br />
| 2011-08-03 <br />
| [[Media:BugSquashingSeminars$SignalSlots.pdf|Signals and Slots in Qt]] <br />
| Diana Wald <br />
|-<br />
| 2011-07-13 <br />
| [[Media:BugSquashingSeminars$code-complexity.pdf|Code Complexity]] <br />
| Stefan Kislinskiy <br />
|-<br />
| 2011-07-06 <br />
| [[Media:BugSquashingSeminars$11-07-06-bugsquashing-copying.pdf|Copy constructors and assignment operators]] <br />
| Thomas van Bruggen <br />
|-<br />
| 2011-06-29 <br />
| [[Media:BugSquashingSeminars$goodCPUbasedITKfilter.pdf|HowTo write a good CPU-based ITK-ThreadedGenerateData]] <br />
| Ignaz Reicht <br />
|-<br />
| 2011-06-22 <br />
| [[Media:BugSquashingSeminars$BugSquashingWhatIsTheMoc.pdf|MetaObjectCompiler]] <br />
| Ingmar Gergel <br />
|-<br />
| 2011-06-08 <br />
| [[Media:BugSquashingSeminars$this-pointer.pdf|The this pointer in C++]] <br />
| David Guerrero <br />
|-<br />
| 2011-06-01 <br />
| [[Media:BugSquashingSeminars$BugSquashingInitialization.pdf|Initialization]] <br />
| Caspar Goch <br />
|-<br />
| 2011-05-25 <br />
| [[Media:BugSquashingSeminars$11-05-24-bugsquashing-uml.pdf|UML - Creating an activity diagram]] <br />
| Michael Müller <br />
|-<br />
| 2011-05-18 <br />
| [[Media:BugSquashingSeminars$TemplateSpecialization.pdf|Template Specialization]] <br />
| Klaus Fritzsche <br />
|-<br />
| 2011-05-11 <br />
| [[Media:BugSquashingSeminars$Cpp-Inheritance.pdf|C++ Inheritance]] <br />
| Sascha Zelzer <br />
|-<br />
| 2011-04-06 <br />
| [[Media:BugSquashingSeminars$MITK_Undo.pdf|Undo in MITK]] <br />
| Ingmar Wegner <br />
|-<br />
| 2011-03-30 <br />
| [[Media:BugSquashingSeminars$Command-Pattern.pdf|The Command Pattern]] <br />
| Andreas Fetzer <br />
|-<br />
| 2011-03-23 <br />
| [[Media:BugSquashingSeminars$DigitalNumericalRepresentations.pdf|Digital Numerical Representations]] <br />
| Markus Fangerau <br />
|-<br />
| 2011-03-09 <br />
| [[Media:BugSquashingSeminars$Using_QThread.pdf|QThread in MITK]] <br />
| Peter Neher <br />
|-<br />
| 2011-03-02 <br />
| [[Media:BugSquashingSeminars$FilterInMITK.pdf|Filter in MITK]] <br />
| Thomas Kilgus <br />
|-<br />
| 2011-02-23 <br />
| [[attachment:BuqSquashing - XML.pdf|XML in MITK]] <br />
| Bastian Graser <br />
|-<br />
| 2011-02-16 <br />
| [[attachment:Computer-aided Design.pdf|Computer-aided Design]] <br />
| Johannes Gaa <br />
|-<br />
| 2011-01-19 <br />
| [[Media:BugSquashingSeminars$Boost.pdf|Boost]] <br />
| Alexander Seitel <br />
|-<br />
| 2011-01-12 <br />
| [[Media:BugSquashingSeminars$OpenCV.pdf|OpenCV]] <br />
| Anja Groch <br />
|}<br />
<br />
<br />
== 2010 seminars ==<br />
{|class="wikitable" width=100% style="background-color:#ffffff;" <br />
! Date<br />
! PDF link <br />
! Presenter<br />
|-<br />
| 2010-12-22 <br />
| [[Media:BugSquashingSeminars$voidPointer.pdf|Void Pointer]] <br />
| Ignaz Reicht <br />
|-<br />
| 2010-12-15 <br />
| [[Media:BugSquashingSeminars$Defining_MITK_Datatypes.pdf|Defining your own MITK Datatypes]] <br />
| Klaus Fritzsche <br />
|-<br />
| 2010-12-01 <br />
| [[Media:BugSquashingSeminars$BugSquashingOperatorOverloading.pdf|Operator Overloading]] <br />
| Sascha Zelzer <br />
|-<br />
| 2010-11-17 <br />
| [[Media:BugSquashingSeminars$designPatternFactoryMethod.pdf|Desing Pattern Factory Method]] <br />
| De Long Iu <br />
|-<br />
| 2010-11-10 <br />
| [[Media:BugSquashingSeminars$vnl.pdf|The VNL library]] <br />
| Tobias Heimann <br />
|-<br />
| 2010-11-03 <br />
| [[Media:BugSquashingSeminars$itk-events.pdf|ITK Events]] <br />
| Michael Müller <br />
|-<br />
| 2010-10-20 <br />
| [[Media:BugSquashingSeminars$BugSquashingSeminar_MITKRoundtrip.pdf|MITK-Core Roundtrip]] <br />
| Sven Mersmann <br />
|-<br />
| 2010-09-29 <br />
| [[Media:BugSquashingSeminars$MitkChannel.pdf|Mitk-Channel]] <br />
| Kwong Yung <br />
|-<br />
| 2010-09-15 <br />
| [[Media:BugSquashingSeminars$Virtual_Methods.pdf|Virtual Methods]] <br />
| Thomas van Bruggen <br />
|-<br />
| 2010-08-08 <br />
| [[Media:BugSquashingSeminars$BugSquashingSeminar_Internationalisierung.pdf|Internationalization]] <br />
| Markus Engel <br />
|-<br />
| 2010-09-01 <br />
| [[Media:BugSquashingSeminars$Friend_Classes.pdf|Friend Classes]] <br />
| Bastian Graser <br />
|-<br />
| 2010-08-25 <br />
| [[Media:BugSquashingSeminars$BugSquashingSeminar_VTKDebugLeaks.pdf|vtkDebugLeaks $ vtk Memory Management]] <br />
| Diana Wald <br />
|-<br />
| 2010-08-18 <br />
| [[Media:BugSquashingSeminars$Exception_Save_Code.pdf|Exception-safe Code]] <br />
| Paul Mercea <br />
|-<br />
| 2010-08-11 <br />
| [[Media:BugSquashingSeminars$MultipleInheritance.pdf|Multiple Inheritance]] <br />
| Alexander Seitel <br />
|-<br />
| 2010-08-04 <br />
| [[Media:BugSquashingSeminars$Traits.pdf|Traits]] <br />
| Caspar Goch <br />
|-<br />
| 2010-04-28 <br />
| [[Media:BugSquashingSeminars$BugSquashingSeminar_SharedLibraries.pdf|Shared Libraries]] <br />
| Markus Fangerau <br />
|-<br />
| 2010-04-07 <br />
| [[Media:BugSquashingSeminars$BugSquashingSeminar_HDF5-Lib.pdf|HDF5-Lib]] <br />
| Sven Mersmann <br />
|-<br />
| 2010-03-17 <br />
| [[Media:BugSquashingSeminars$design-patterns-introduction.pdf|Design Patterns and the proxy pattern]] <br />
| Michael Müller <br />
|-<br />
| 2010-03-10 <br />
| [[Media:BugSquashingSeminars$QmitkFunctionality.pdf|Things to know about the QmitkFunctionality class]] <br />
| Michael Müller <br />
|-<br />
| 2010-03-03 <br />
| [[Media:BugSquashingSeminars$BugSquashingSeminar_Doxygen.pdf|Doxygen]] <br />
| Caspar Goch <br />
|-<br />
| 2010-02-24 <br />
| [[Media:BugSquashingSeminars$MITK_StyleGuide.pdf|MITK Style Guide]] <br />
| Diana Wald <br />
|-<br />
| 2010-02-03 <br />
| [[Media:BugSquashingSeminars$exceptions-in-cpp.pdf|Exceptions in C++]] <br />
| Michael Müller <br />
|-<br />
| 2010-01-11 <br />
| [[Media:BugSquashingSeminars$iostreams.pdf|C++ STL I$O-Streams]] <br />
| Daniel Maleike <br />
|-<br />
| 2010-01-11 <br />
| [[Media:BugSquashingSeminars$MITK_InstallersPDF.pdf|MITK Application Deployment]] <br />
| Matthias Baumhauer <br />
|}<br />
<br />
<br />
== 2009 seminars ==<br />
{|class="wikitable" width=100% style="background-color:#ffffff;" <br />
! Date<br />
! PDF link <br />
! Presenter <br />
|-<br />
| unscheduled <br />
| IGT-Showcase <br />
| Jochen Neuhaus <br />
|-<br />
| 2009-11-04 <br />
| [[Media:BugSquashingSeminars$MITK_Coordinate_Systems.pdf|MITK Coordinate Systems]] <br />
| Tobias Schwarz <br />
|-<br />
| 2009-10-21 <br />
| [[Article: Using Perspectives in the Workbench]] <br />
| Sascha Zelzer <br />
|-<br />
| 2009-10-07 <br />
| [[Article:_Save_and_Restore_your_View_State]] <br />
| Sascha Zelzer <br />
|-<br />
| 2009-09-30 <br />
| [[Media:BugSquashingSeminars$SelectionService.pdf|The BlueBerry Selection Service]] <br />
| Klaus Fritzsche <br />
|-<br />
| 2009-07-08 <br />
| How rendering is done in MITK and how it should be done <br />
| Mathias Seitel, Markus Fangerau <br />
|-<br />
| 2009-07-01 <br />
| [[Media:BugSquashingSeminars$Pipelining.pdf|The MITK$ITK Pipeline]] <br />
| Phillip Hartmann <br />
|-<br />
| 2009-06-24 <br />
| What are modules in the new build system <br />
| Marco Nolden <br />
|-<br />
| 2009-06-17 <br />
| [[Media:BugSquashingSeminars$play_button.pdf|How source code becomes executable (the "play" button)]] <br />
| Daniel Maleike <br />
|-<br />
| 2009-06-03 <br />
| [[Media:BugSquashingSeminars$logging.pdf|New logging macros for MITK]] <br />
| Markus Fangerau <br />
|-<br />
| 2009-05-27 <br />
| [[Media:BugSquashingSeminars$eclipse_ui_guidelines.pdf|Eclipse UI Guidelines]] <br />
| Michael Müller <br />
|-<br />
| 2009-05-20 <br />
| [[Media:BugSquashingSeminars$how_to_use_the_datastorage.pdf|DataStorage finally replaces DataTree]] <br />
| Jochen Neuhaus <br />
|-<br />
| 2009-05-13 <br />
| [[Media:BugSquashingSeminars$schwarzwald_dashboards.pdf|Post-Schwarzwald dashboards and Dart clients]] <br />
| Tobias Schwarz <br />
|-<br />
| 2009-05-07 <br />
| [[Media:BugSquashingSeminars$PreferencesService.pdf|The Preferences Service]] <br />
| Michael Müller</div>AndreasFetzerhttp://mitk.org/w/index.php?title=MITK_ReleaseNotes_2014.10&diff=2340MITK ReleaseNotes 2014.102015-01-08T09:54:21Z<p>AndreasFetzer: /* Build system */</p>
<hr />
<div>[[File:Release2014-10.png|thumb|300px|MITK ReleaseNotes 2014.10]]<br />
<br />
This is the 2014.10 release of the [[MITK_Release_Cycle|MITK release cycle]]. The complete list of new features, bug fixes and known issues is down on this page.<br />
<br />
__TOC__<br />
<br />
<br />
== What's included? ==<br />
Binary installers for Windows, Mac OS X and Linux are provided, which contain the ''MITK Workbench'' application. In addition to image loading/saving and level windowing, the following plugins are included:<br />
<br />
* Volume Visualization<br />
* Measurement<br />
* Interactive Segmentation<br />
* Logging View<br />
* '''experimental''' DICOM Query/Retrieve (based on components from the Common Toolkit [http://commontk.org CTK])<br />
<br />
<br />
The following plugins have been newly added in this version:<br />
<br />
* Remeshing:<br />
:: Optimize and resample your surface meshes<br />
* Pointset Interaction:<br />
:: Place seedpoints, correspondences, or landmarks<br />
* Image Cropper:<br />
:: VOI selection based on various shapes<br />
* View Navigator:<br />
:: Easily access views and perspectives & create new perspectives<br />
* Screenshot Maker:<br />
:: Create high resolution screenshots of your data<br />
* '''experimental''' Movie Maker:<br />
:: Create videos of your data using timeline based animations<br />
* '''experimental''' Point-based, rigid and manual registration<br />
<br />
Please note that the installers do not contain the source code or header files for the precompiled libraries. To develop applications or plugins with MITK please get the [[Downloads#Source_code| source code]].<br />
<br />
<br />
== How to get it? ==<br />
Please have a look at the [[Downloads|download page]].<br />
<br />
<br />
== Highlights of 2014.10 release ==<br />
<br />
<br />
=== Build system ===<br />
* Support for CMake 3.0<br />
* Recommended Doxygen version is now 1.8.7<br />
* Mac OS X<br />
** MITK Workbench Installers for Mac OS X 10.7+<br />
** Full support for MITK development on Mac OS X 10.9<br />
** Full support for clang 6.0 compiler<br />
** Dropped support for gcc compiler<br />
<br />
=== Core modules ===<br />
The MitkCore module gained the following new features:<br />
<br />
* New I/O concept based on new new [http://docs.mitk.org/2014.10/structmitk_1_1IFileReader.html IFileReader] and [http://docs.mitk.org/2014.10/structmitk_1_1IFileWriter.html IFileWriter] interfaces<br />
* Vector image support has been added to mitk::Image and the ITK access macros<br />
* Image read and write accessors together with ITK macros now handle const and non-const mitk::Image instances correctly<br />
* Ongoing refactoring of the geometry classes:<br />
** New abstract BaseGeometry class<br />
** New inheritance of geometry classes<br />
** Geometry2D replaced by existing PlaneGeometry<br />
** All variables are private now<br />
** More information [http://docs.mitk.org/2014.10/GeometryMigration.html here]<br />
<br />
The [http://docs.mitk.org/2014.10/MicroServices_Overview.html CppMicroServices] library now features:<br />
<br />
* Usage of arbitray classes as service interfaces without the need to decorate the class with a [http://docs.mitk.org/2014.10/group__MicroServices.html#gad5c1340dcd99d403c8da0c52b8db30bb US_DECLARE_SERVICE_INTERFACE] macro.<br />
* Improved [http://docs.mitk.org/2014.10/MicroServices_StaticModules.html static library] handling.<br />
* Improved [http://docs.mitk.org/2014.10/MicroServices_Resources.html resources system] based on embedded zip files.<br />
<br />
<br />
=== Modules ===<br />
The following modules were newly added or factored out from existing modules:<br />
<br />
* DICOMReader and DICOMTesting for advanced reading of DICOM files<br />
* DicomRT for handling Radio-Therapy dose images and RT structure sets<br />
* LegacyIO containing the deprecated I/O system (this module will be removed again in the future)<br />
* QtOverlays containing Qt-based overlays (factored out from the Overlays module)<br />
* XNAT (experimental) for accessing XNAT session objects as service objects<br />
<br />
==== Python ====<br />
* Reworked Python-Wrapping: More information [http://docs.mitk.org/2014.10/org_mitk_gui_qt_python.html here].<br />
<br />
==== Segmentation ====<br />
The 3D interpolation has been improved in many areas:<br />
<br />
* Speed-up of interpolation time<br />
* Undo/Redo working<br />
* Live Wire tool is now also working in combination with the 3D interpolation<br />
* Save 3D interpolation as a MITK scene file and reinit interpolation across application restart<br />
<br />
==== MITK Workbench ====<br />
* New icon theme<br />
<br />
==== IGT ====<br />
* New persistence framework to store GUI parameters until next start of the application<br />
* New design of the navigation data player<br />
<br />
==== Third-Party Toolkits ====<br />
The following toolkits were updated:<br />
<br />
* Boost (1.56)<br />
* CTK (65420ed0)<br />
* Qxt (3e7424f842d4)<br />
* VTK (6.1.0+74f4888)<br />
<br />
The following third-party toolkits were added to the MITK superbuild:<br />
<br />
* Numpy<br />
* Eigen<br />
* PCRE<br />
* Python<br />
* SimpleITK<br />
* Swig<br />
* ZLIB<br />
<br />
<br />
== Deprecated Functionality ==<br />
The documentation contains a detailed list of [http://docs.mitk.org/2014.10/group__MITKDeprecatedAPI.html#deprecatedSince2014_10 deprecated functionality]. Please find a summary below:<br />
<br />
* The previous I/O system has been deprecated and will be removed in the future.<br />
* Some MITK macros for C++ unit testing have been deprecated.<br />
* The Qxt library will not be included anymore starting with the next release<br />
* Early announcement: The next release will be based on Qt5. Qt4 support might be declared deprecated in the next release and dropped in the release after next.<br />
<br />
<br />
== Breaking Changes ==<br />
Breaking changes related to CTK:<br />
<br />
* The syntax for specifying library versions when pre-loading them using berry::Platform::ARG_PRELOAD_LIBRARY changed from *libMyLibrary:1.0* to *libMyLibrary$1.0* (fixing a bug when using absolute library paths on Windows).<br />
<br />
Breaking changes related to CppMicroServices:<br />
<br />
* The signature of the [http://docs.mitk.org/2014.10/group__MicroServicesCMake.html#ga40f3441d51b7de932405454bb3b25ac2 usFunctionEmbedResources] CMake macro changed.<br />
* If a service interface was used in qobject_cast calls (e.g. in the CTK Plugin Framework context) and that service interface does not inherit from QObject and does not provide its own Q_DECLARE_INTERFACE macro, the newly introduced [http://docs.mitk.org/2014.10/mitkServiceInterface_8h.html#ab88ec0455763a7f14ed654151d20c109 MITK_DECLARE_SERVICE_INTERFACE] macro must be used (instead of the US_DECLARE_SERVICE_INTERFACE macro). See [http://mitk.org/git/?p=MITK.git;a=blobdiff;f=Core/Code/Controllers/mitkPlanePositionManager.h;h=9c71be65fbbe77fdcaa9ea06c583ed49dae2e930;hp=cddb1e9f95c10f105a0bd6cd93caab6a2466f636;hb=8c23715eaa2a0037382bfa385b88e5d23ce88eef;hpb=6edf5ce33e859aceec12555419e9ee9924cd2feb this code] for an example.<br />
<br />
<br />
== Bugfixes ==<br />
In the 8 months since the last release more than [http://bugs.mitk.org/buglist.cgi?bug_severity=blocker&bug_severity=critical&bug_severity=major&bug_severity=medium&bug_severity=minor&bug_severity=trivial&bug_severity=unspecified&bug_status=RESOLVED&chfield=resolution&chfield=bug_status&chfieldfrom=2014-04-08&chfieldto=2014-11-27&chfieldvalue=FIXED&component=BlueBerry&component=Build%20system&component=Core&component=CoreApp%20Plugins&component=CoreUI&component=Diffusion%20Imaging&component=Documentation&component=IGT&component=Measurement%20Bundle&component=Modules&component=Other&component=Python%20Wrapping&component=Qt%20GUI%20Modules&component=Rendering&component=Segmentation&component=ToF&component=Workbench%20Plugins&list_id=77737&product=MITK&query_format=advanced&resolution=FIXED&order=changeddate,bug_severity,priority,bug_id%20DESC&query_based_on= 400] bugs were fixed.<br />
<br />
Not everything could be fixed in time, so here are the most important [http://bugs.mitk.org/buglist.cgi?priority=high&bug_severity=blocker&bug_severity=critical&bug_severity=major&chfieldto=2014-27-11&chfield=%5bBug%20creation%5d&query_format=advanced&bug_status=UNCONFIRMED&bug_status=CONFIRMED&bug_status=IN_PROGRESS&product=MITK known issues]<br />
<br />
<br />
== New feature list ==<br />
Complete list of new features since MITK 2014.10:<br />
<br />
{| class="wikitable" width=100% style="background-color:#ffffff;"<br />
![http://bugs.mitk.org/buglist.cgi?bug_severity=feature%20request&bug_status=RESOLVED&chfieldfrom=2014-04-08&chfieldto=2014-11-20&columnlist=bug_id,component,short_desc&list_id=79967&product=MITK&query_format=advanced&resolution=FIXED&order=bug_id&query_based_on= ID]<br />
![http://bugs.mitk.org/buglist.cgi?bug_severity=feature%20request&bug_status=RESOLVED&chfieldfrom=2014-04-08&chfieldto=2014-11-20&columnlist=bug_id,component,short_desc&list_id=79967&product=MITK&query_format=advanced&resolution=FIXED&order=component%20DESC,changeddate,bug_severity,priority,bug_id%20DESC&query_based_on= Comp] <br />
![http://bugs.mitk.org/buglist.cgi?bug_severity=feature%20request&bug_status=RESOLVED&chfieldfrom=2014-04-08&chfieldto=2014-11-20&columnlist=bug_id,component,short_desc&list_id=79967&product=MITK&query_format=advanced&resolution=FIXED&order=short_desc,component,changeddate,bug_severity,priority,bug_id%20DESC&query_based_on= Summary]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16117 16117]<br />
|BlueBerry<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16117 Add print(er) support]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16272 16272]<br />
|Build system<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16272 Build system support for Qt5 + QML demo application] <br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16865 16865]<br />
|Build system <br />
|[http://bugs.mitk.org/show_bug.cgi?id=16865 Provide a package version file for MITK]|<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18035 18035]<br />
|Build system <br />
|[http://bugs.mitk.org/show_bug.cgi?id=18035 CDash clients should display pretty distribution names in their build name]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18160 18160]<br />
|Build system<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18160 Implement possibility to switch between different icon sets]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18323 18323]<br />
|Build system<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18323 Define MITK Diffusion specific MITK_BUILD_CONFIGURATION]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17832 17832]<br />
|Build system<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17832 Update CTK for improved XNAT support]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15749 15749]<br />
|Core<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15749 Compression should be configurable in mitkImageWriter]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17738 17738]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17738 Alternative projections for thick slice mode]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17196 17196]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17196 DisplayInteractor should support more configuration]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15852 15852]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=15852 platformproject: enable easy conversion of datatypes Point/Vector/Matrix from and to MITK]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17934 17934]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17934 ImageWriteAccessor should ignore ReadAccessors with IgnoreLock option]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17931 17931]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17931 ImageToItk should lock input image for reading if output image is const]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17986 17986]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17986 Enable mitk::Image to contain itk::VectorImage]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15821 15821]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=15821 Add possibility to accessByItk using ReadAccessor]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17960 17960]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17960 Image loaded from DICOM should have property containing the modality]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16862 16862]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=16862 Disable repositioning region on window resize]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17727 17727]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17727 Add support for renderer specific property predicate]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17035 17035]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17035 Introduce new Geometry concept: BaseGeometry class, less inheritance, etc (Platform project)]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16744 16744]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=16744 Refactoring of DicomSeriesReader]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17918 17918]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17918 Introduce hidden objects in the data storage]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17441 17441]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17441 Setup NonLocalMeansDenoisingTest]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17592 17592]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17592 Fiberfox: image input to determine non-fiber volume fractions] <br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15770 15770]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15770 Multishell Signal Processing]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17757 17757]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17757 DICOM export from CL (MiniApp)]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17760 17760] <br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17760 Include Resampling to fixed spacing into BatchedRegistration]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17626 17626]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17626 refactor PreprocessingView Layout] <br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17820 17820]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17820 Enhance BatchedFolderRegistration]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17961 17961]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17961 Resampling MiniApp for regular Images and DW Images]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17811 17811]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17811 Improve Connectomics mini apps functionality]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17968 17968]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17968 Implement mit diffusion navigator view]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17994 17994]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17994 Create random parcellation view]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=8870 8870]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=8870 Highlight selected ROI if Fiber Bundle Operations View is active]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17973 17973] <br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17973 XML support for diffusion miniapps]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18234 18234]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18234 segmentation view should be included in fiber processing perspective] <br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15630 15630]<br />
|Documentation <br />
|[http://bugs.mitk.org/show_bug.cgi?id=15630 Refer to image documentation in doxygen class description]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=14420 14420]<br />
|Documentation<br />
|[http://bugs.mitk.org/show_bug.cgi?id=14420 Fix up documentation to be pdf ready]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18146 18146]<br />
|Documentation<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18146 Improve Viewnavigator documentation]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17718 17718]<br />
|IGT <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17718 Workerthreads for tracking plugins]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17735 17735]<br />
|IGT<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17735 Make tool landmarks editable in the navigation tool manager]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17922 17922]<br />
|IGT <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17922 Change tool color if navigation tool is invalid]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17771 17771]<br />
|IGT <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17771 Add method to get raw displacement navigation data from mitk::NodeDisplacementFilter]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17690 17690]<br />
|Measurement<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17690 Refactor intensity profile computation]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18094 18094]<br />
|Measurement<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18094 Implement intensity profile computation]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17824 17824]<br />
|Modules<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17824 QmitkUSNewVideoDeviceWidget does not offer a file open dialog for video files]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17840 17840]<br />
|Modules<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17840 USDevice should notify about property changes.]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17859 17859]<br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17859 Method for getting if at least one calibration for a Combined Modality was loaded.]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17861 17861]<br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17861 Documentation of the ultrasound module should be updated to reflect the current status of the module]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16625 16625]<br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=16625 PlanarCircle should be editable with each point on the circle]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16623 16623]<br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=16623 Make OpenCV GrabCut algorithm available in MITK]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18116 18116]<br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=18116 Integrate personal simulation branch]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15104 15104] <br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=15104 Create Overlay framework for managing different types of graphic items in the renderwindows]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17911 17911]<br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17911 US Telemed devices: get image geometry from device]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17846 17846]<br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17846 RT structureset reader refactoring]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17847 17847]<br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17847 RT dose-image reader refactoring]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16643 16643]<br />
|Modules<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16643 Persistence framework for MITK]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17987 17987]<br />
|Other <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17987 Enable / disable mbilog output]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15803 15803]<br />
|Other <br />
|[http://bugs.mitk.org/show_bug.cgi?id=15803 Eliminate compiler warnings]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17689 17689]<br />
|QtWidget <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17689 Implement plot widget based on gnuplot]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17536 17536]<br />
|QtWidget <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17536 Clean up QtWidgetsExt]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15912 15912]<br />
|QtWidget <br />
|[http://bugs.mitk.org/show_bug.cgi?id=15912 QmitkTransferFunctionWidget lacks renderer-specific transfer function ability]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=14386 14386]<br />
|Rendering<br />
|[http://bugs.mitk.org/show_bug.cgi?id=14386 Colormaps and look-up tables]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18136 18136]<br />
|Rendering<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18136 Use existing scalar lookup table from vtkPolyData in SurfaceGLMapper2D]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17567 17567]<br />
|Segmentation<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17567 Otsu 3D Tool: selection of multiple classes]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16095 16095]<br />
|Segmentation<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16095 When creating a polygon the resulting data nodes should clear naming]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15851 15851]<br />
|Segmentation<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15851 Create user manual for clipping plane view]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=12304 12304]<br />
|Segmentation<br />
|[http://bugs.mitk.org/show_bug.cgi?id=12304 Intersection contour detection should cover more cases]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18007 18007]<br />
|Segmentation<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18007 Re-initialization of the 3D interpolation after application restart]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17803 17803]<br />
|Segmentation<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17803 Implement ImageToContourModelFilter]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17124 17124]<br />
|ToF <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17124 Kinect V2 texture mapping]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=12047 12047]<br />
|Workbench<br />
|[http://bugs.mitk.org/show_bug.cgi?id=12047 Segmentation perspective missing in ext app installer]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17525 17525]<br />
|Workbench<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17525 Number of bins of the histogram in the statistics view is fix defined]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17866 17866]<br />
|Workbench<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17866 Ultrasound plugin should automatically select first entry on the device lists]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16294 16294]<br />
|Workbench<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16294 XNAT Browsing Editor for MITK]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18157 18157]<br />
|Workbench<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18157 Set default focus of view navigator to search bar]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17923 17923]<br />
|Workbench<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17923 Persistence for Ultrasound plugin]<br />
|}</div>AndreasFetzerhttp://mitk.org/w/index.php?title=MITK_ReleaseNotes_2014.10&diff=2158MITK ReleaseNotes 2014.102014-11-28T12:57:58Z<p>AndreasFetzer: /* New feature list */</p>
<hr />
<div>[[File:Release2014-10.png|thumb|300px|MITK ReleaseNotes 2014.10]]<br />
<br />
This is the 2014.10 release of the [[MITK_Release_Cycle|MITK release cycle]]. The complete list of new features, bug fixes and known issues is down on this page.<br />
<br />
<br />
<br />
__TOC__<br />
<br />
<br />
== What's included? ==<br />
Binary installers for Windows, Mac OS X and Linux are provided, which contain the ''MITK Workbench'' application. In addition to image loading/saving and level windowing, the following plugins are included:<br />
<br />
* Volume Visualization<br />
* Measurement<br />
* Interactive Segmentation<br />
* Logging View<br />
* '''experimental''' DICOM Query/Retrieve (based on components from the Common Toolkit [http://commontk.org CTK])<br />
<br />
<br />
The following plugins have been newly added in this version:<br />
<br />
* Remeshing:<br />
:: Optimize and resample your surface meshes<br />
* Pointset Interaction:<br />
:: Place seedpoints, correspondences, or landmarks<br />
* Image Cropper:<br />
:: VOI selection based on various shapes<br />
* View Navigator:<br />
:: Easily access views and perspectives & create new perspectives<br />
* Screenshot Maker:<br />
:: Create high resolution screenshots of your data<br />
* '''experimental''' Movie Maker:<br />
:: Create videos of your data using timeline based animations<br />
* '''experimental''' Point-based, rigid and manual registration<br />
<br />
Please note that the installers do not contain the source code or header files for the precompiled libraries. To develop applications or plugins with MITK please get the [[Downloads#Source_code| source code]].<br />
<br />
== How to get it? ==<br />
Please have a look at the [[Downloads|download page]].<br />
<br />
<br />
== Highlights of 2014.10 release ==<br />
<br />
<br />
=== Build system ===<br />
* Support for CMake 3.0<br />
* Recommended Doxygen version is now 1.8.7<br />
* Mac OS X<br />
** Full support for 10.9<br />
** Full support for clang 6.0 compiler<br />
** Dropped support for gcc compiler<br />
<br />
=== Core modules ===<br />
The MitkCore module gained the following new features:<br />
<br />
* New I/O concept based on new new [http://docs.mitk.org/2014.10/structmitk_1_1IFileReader.html IFileReader] and [http://docs.mitk.org/2014.10/structmitk_1_1IFileWriter.html IFileWriter] interfaces<br />
* Vector image support has been added to mitk::Image and the ITK access macros<br />
* Image read and write accessors together with ITK macros now handle const and non-const mitk::Image instances correctly<br />
* Ongoing refactoring of the geometry classes:<br />
** New abstract BaseGeometry class<br />
** New inheritance of geometry classes<br />
** Geometry2D replaced by existing PlaneGeometry<br />
** All variables are private now<br />
** More information [http://docs.mitk.org/2014.10/GeometryMigration.html here]<br />
<br />
The [http://docs.mitk.org/2014.10/MicroServices_Overview.html CppMicroServices] library now features:<br />
<br />
* Usage of arbitray classes as service interfaces without the need to decorate the class with a [http://docs.mitk.org/2014.10/group__MicroServices.html#gad5c1340dcd99d403c8da0c52b8db30bb US_DECLARE_SERVICE_INTERFACE] macro.<br />
* Improved [http://docs.mitk.org/2014.10/MicroServices_StaticModules.html static library] handling.<br />
* Improved [http://docs.mitk.org/2014.10/MicroServices_Resources.html resources system] based on embedded zip files.<br />
<br />
=== Modules ===<br />
The following modules were newly added or factored out from existing modules:<br />
<br />
* DICOMReader and DICOMTesting for advanced reading of DICOM files<br />
* DicomRT for handling Radio-Therapy dose images and RT structure sets<br />
* LegacyIO containing the deprecated I/O system (this module will be removed again in the future)<br />
* QtOverlays containing Qt-based overlays (factored out from the Overlays module)<br />
* XNAT (experimental) for accessing XNAT session objects as service objects<br />
<br />
==== Python ====<br />
* Reworked Python-Wrapping: More information [http://docs.mitk.org/2014.10/org_mitk_gui_qt_python.html here].<br />
<br />
==== Segmentation ====<br />
The 3D interpolation has been improved in many areas:<br />
<br />
* Speed-up of interpolation time<br />
* Undo/Redo working<br />
* Live Wire tool is now also working in combination with the 3D interpolation<br />
* Save 3D interpolation as a MITK scene file and reinit interpolation across application restart<br />
<br />
==== MITK Workbench ====<br />
* New icon theme<br />
<br />
==== Third-Party Toolkits ====<br />
The following toolkits were updated:<br />
<br />
* Boost (1.56)<br />
* CTK (65420ed0)<br />
* Qxt (3e7424f842d4)<br />
* VTK (6.1.0+74f4888)<br />
<br />
The following third-party toolkits were added to the MITK superbuild:<br />
<br />
* Numpy<br />
* Eigen<br />
* PCRE<br />
* Python<br />
* SimpleITK<br />
* Swig<br />
* ZLIB<br />
<br />
== Deprecated Functionality ==<br />
The documentation contains a detailed list of [http://docs.mitk.org/2014.10/group__MITKDeprecatedAPI.html#deprecatedSince2014_10 deprecated functionality]. Please find a summary below:<br />
<br />
* The previous I/O system has been deprecated and will be removed in the future.<br />
* Some MITK macros for C++ unit testing have been deprecated.<br />
* The Qxt library will not be included anymore starting with the next release<br />
* Early announcement: The next release will be based on Qt5. Qt4 support might be declared deprecated in the next release and dropped in the release after next.<br />
<br />
<br />
== Breaking Changes ==<br />
Breaking changes related to CTK:<br />
<br />
* The syntax for specifying library versions when pre-loading them using berry::Platform::ARG_PRELOAD_LIBRARY changed from *libMyLibrary:1.0* to *libMyLibrary$1.0* (fixing a bug when using absolute library paths on Windows).<br />
<br />
Breaking changes related to CppMicroServices:<br />
<br />
* The signature of the [http://docs.mitk.org/2014.10/group__MicroServicesCMake.html#ga40f3441d51b7de932405454bb3b25ac2 usFunctionEmbedResources] CMake macro changed.<br />
<br />
<br />
== Bugfixes ==<br />
In the 8 months since the last release more than [http://bugs.mitk.org/buglist.cgi?bug_severity=blocker&bug_severity=critical&bug_severity=major&bug_severity=medium&bug_severity=minor&bug_severity=trivial&bug_severity=unspecified&bug_status=RESOLVED&chfield=resolution&chfield=bug_status&chfieldfrom=2014-04-08&chfieldto=2014-11-27&chfieldvalue=FIXED&component=BlueBerry&component=Build%20system&component=Core&component=CoreApp%20Plugins&component=CoreUI&component=Diffusion%20Imaging&component=Documentation&component=IGT&component=Measurement%20Bundle&component=Modules&component=Other&component=Python%20Wrapping&component=Qt%20GUI%20Modules&component=Rendering&component=Segmentation&component=ToF&component=Workbench%20Plugins&list_id=77737&product=MITK&query_format=advanced&resolution=FIXED&order=changeddate,bug_severity,priority,bug_id%20DESC&query_based_on= 400] bugs were fixed.<br />
<br />
Not everything could be fixed in time, so here are the most important [http://bugs.mitk.org/buglist.cgi?priority=high&bug_severity=blocker&bug_severity=critical&bug_severity=major&chfieldto=2014-27-11&chfield=%5bBug%20creation%5d&query_format=advanced&bug_status=UNCONFIRMED&bug_status=CONFIRMED&bug_status=IN_PROGRESS&product=MITK known issues]<br />
<br />
== New feature list ==<br />
Complete list of new features since MITK 2014.10:<br />
<br />
{| class="wikitable" style="background-color:#ffffff;"<br />
![http://bugs.mitk.org/buglist.cgi?bug_severity=feature%20request&bug_status=RESOLVED&chfieldfrom=2014-04-08&chfieldto=2014-11-20&columnlist=bug_id,component,short_desc&list_id=79967&product=MITK&query_format=advanced&resolution=FIXED&order=bug_id&query_based_on= ID]<br />
![http://bugs.mitk.org/buglist.cgi?bug_severity=feature%20request&bug_status=RESOLVED&chfieldfrom=2014-04-08&chfieldto=2014-11-20&columnlist=bug_id,component,short_desc&list_id=79967&product=MITK&query_format=advanced&resolution=FIXED&order=component%20DESC,changeddate,bug_severity,priority,bug_id%20DESC&query_based_on= Comp] <br />
![http://bugs.mitk.org/buglist.cgi?bug_severity=feature%20request&bug_status=RESOLVED&chfieldfrom=2014-04-08&chfieldto=2014-11-20&columnlist=bug_id,component,short_desc&list_id=79967&product=MITK&query_format=advanced&resolution=FIXED&order=short_desc,component,changeddate,bug_severity,priority,bug_id%20DESC&query_based_on= Summary]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16117 16117]<br />
|BlueBerry<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16117 Add print(er) support]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16272 16272]<br />
|Build system<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16272 Build system support for Qt5 + QML demo application] <br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16865 16865]<br />
|Build system <br />
|[http://bugs.mitk.org/show_bug.cgi?id=16865 Provide a package version file for MITK]|<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18035 18035]<br />
|Build system <br />
|[http://bugs.mitk.org/show_bug.cgi?id=18035 CDash clients should display pretty distribution names in their build name]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18160 18160]<br />
|Build system<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18160 Implement possibility to switch between different icon sets]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18323 18323]<br />
|Build system<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18323 Define MITK Diffusion specific MITK_BUILD_CONFIGURATION]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17832 17832]<br />
|Build system<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17832 Update CTK for improved XNAT support]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15749 15749]<br />
|Core<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15749 Compression should be configurable in mitkImageWriter]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17738 17738]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17738 Alternative projections for thick slice mode]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17196 17196]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17196 DisplayInteractor should support more configuration]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15852 15852]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=15852 platformproject: enable easy conversion of datatypes Point/Vector/Matrix from and to MITK]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17934 17934]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17934 ImageWriteAccessor should ignore ReadAccessors with IgnoreLock option]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17931 17931]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17931 ImageToItk should lock input image for reading if output image is const]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17986 17986]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17986 Enable mitk::Image to contain itk::VectorImage]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15821 15821]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=15821 Add possibility to accessByItk using ReadAccessor]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17960 17960]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17960 Image loaded from DICOM should have property containing the modality]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16862 16862]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=16862 Disable repositioning region on window resize]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17727 17727]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17727 Add support for renderer specific property predicate]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17035 17035]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17035 Introduce new Geometry concept: BaseGeometry class, less inheritance, etc (Platform project)]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16744 16744]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=16744 Refactoring of DicomSeriesReader]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17918 17918]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17918 Introduce hidden objects in the data storage]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17441 17441]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17441 Setup NonLocalMeansDenoisingTest]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17592 17592]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17592 Fiberfox: image input to determine non-fiber volume fractions] <br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15770 15770]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15770 Multishell Signal Processing]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17757 17757]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17757 DICOM export from CL (MiniApp)]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17760 17760] <br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17760 Include Resampling to fixed spacing into BatchedRegistration]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17626 17626]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17626 refactor PreprocessingView Layout] <br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17820 17820]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17820 Enhance BatchedFolderRegistration]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17961 17961]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17961 Resampling MiniApp for regular Images and DW Images]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17811 17811]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17811 Improve Connectomics mini apps functionality]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17968 17968]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17968 Implement mit diffusion navigator view]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17994 17994]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17994 Create random parcellation view]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=8870 8870]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=8870 Highlight selected ROI if Fiber Bundle Operations View is active]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17973 17973] <br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17973 XML support for diffusion miniapps]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18234 18234]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18234 segmentation view should be included in fiber processing perspective] <br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15630 15630]<br />
|Documentation <br />
|[http://bugs.mitk.org/show_bug.cgi?id=15630 Refer to image documentation in doxygen class description]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=14420 14420]<br />
|Documentation<br />
|[http://bugs.mitk.org/show_bug.cgi?id=14420 Fix up documentation to be pdf ready]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18146 18146]<br />
|Documentation<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18146 Improve Viewnavigator documentation]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17718 17718]<br />
|IGT <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17718 Workerthreads for tracking plugins]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17735 17735]<br />
|IGT<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17735 Make tool landmarks editable in the navigation tool manager]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17922 17922]<br />
|IGT <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17922 Change tool color if navigation tool is invalid]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17771 17771]<br />
|IGT <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17771 Add method to get raw displacement navigation data from mitk::NodeDisplacementFilter]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17690 17690]<br />
|Measurement<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17690 Refactor intensity profile computation]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18094 18094]<br />
|Measurement<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18094 Implement intensity profile computation]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17824 17824]<br />
|Modules<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17824 QmitkUSNewVideoDeviceWidget does not offer a file open dialog for video files]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17840 17840]<br />
|Modules<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17840 USDevice should notify about property changes.]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17859 17859]<br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17859 Method for getting if at least one calibration for a Combined Modality was loaded.]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17861 17861]<br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17861 Documentation of the ultrasound module should be updated to reflect the current status of the module]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16625 16625]<br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=16625 PlanarCircle should be editable with each point on the circle]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16623 16623]<br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=16623 Make OpenCV GrabCut algorithm available in MITK]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18116 18116]<br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=18116 Integrate personal simulation branch]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15104 15104] <br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=15104 Create Overlay framework for managing different types of graphic items in the renderwindows]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17911 17911]<br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17911 US Telemed devices: get image geometry from device]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17846 17846]<br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17846 RT structureset reader refactoring]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17847 17847]<br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17847 RT dose-image reader refactoring]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16643 16643]<br />
|Modules<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16643 Persistence framework for MITK]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17987 17987]<br />
|Other <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17987 Enable / disable mbilog output]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15803 15803]<br />
|Other <br />
|[http://bugs.mitk.org/show_bug.cgi?id=15803 Eliminate compiler warnings]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17689 17689]<br />
|QtWidget <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17689 Implement plot widget based on gnuplot]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17536 17536]<br />
|QtWidget <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17536 Clean up QtWidgetsExt]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15912 15912]<br />
|QtWidget <br />
|[http://bugs.mitk.org/show_bug.cgi?id=15912 QmitkTransferFunctionWidget lacks renderer-specific transfer function ability]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=14386 14386]<br />
|Rendering<br />
|[http://bugs.mitk.org/show_bug.cgi?id=14386 Colormaps and look-up tables]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18136 18136]<br />
|Rendering<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18136 Use existing scalar lookup table from vtkPolyData in SurfaceGLMapper2D]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17567 17567]<br />
|Segmentation<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17567 Otsu 3D Tool: selection of multiple classes]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16095 16095]<br />
|Segmentation<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16095 When creating a polygon the resulting data nodes should clear naming]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15851 15851]<br />
|Segmentation<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15851 Create user manual for clipping plane view]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=12304 12304]<br />
|Segmentation<br />
|[http://bugs.mitk.org/show_bug.cgi?id=12304 Intersection contour detection should cover more cases]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18007 18007]<br />
|Segmentation<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18007 Re-initialization of the 3D interpolation after application restart]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17803 17803]<br />
|Segmentation<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17803 Implement ImageToContourModelFilter]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17124 17124]<br />
|ToF <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17124 Kinect V2 texture mapping]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=12047 12047]<br />
|Workbench<br />
|[http://bugs.mitk.org/show_bug.cgi?id=12047 Segmentation perspective missing in ext app installer]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17525 17525]<br />
|Workbench<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17525 Number of bins of the histogram in the statistics view is fix defined]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17866 17866]<br />
|Workbench<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17866 Ultrasound plugin should automatically select first entry on the device lists]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16294 16294]<br />
|Workbench<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16294 XNAT Browsing Editor for MITK]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18157 18157]<br />
|Workbench<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18157 Set default focus of view navigator to search bar]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17923 17923]<br />
|Workbench<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17923 Persistence for Ultrasound plugin]<br />
|}</div>AndreasFetzerhttp://mitk.org/w/index.php?title=MITK_ReleaseNotes_2014.10&diff=2157MITK ReleaseNotes 2014.102014-11-28T12:57:39Z<p>AndreasFetzer: /* Highlights of 2014.03 release */</p>
<hr />
<div>[[File:Release2014-10.png|thumb|300px|MITK ReleaseNotes 2014.10]]<br />
<br />
This is the 2014.10 release of the [[MITK_Release_Cycle|MITK release cycle]]. The complete list of new features, bug fixes and known issues is down on this page.<br />
<br />
<br />
<br />
__TOC__<br />
<br />
<br />
== What's included? ==<br />
Binary installers for Windows, Mac OS X and Linux are provided, which contain the ''MITK Workbench'' application. In addition to image loading/saving and level windowing, the following plugins are included:<br />
<br />
* Volume Visualization<br />
* Measurement<br />
* Interactive Segmentation<br />
* Logging View<br />
* '''experimental''' DICOM Query/Retrieve (based on components from the Common Toolkit [http://commontk.org CTK])<br />
<br />
<br />
The following plugins have been newly added in this version:<br />
<br />
* Remeshing:<br />
:: Optimize and resample your surface meshes<br />
* Pointset Interaction:<br />
:: Place seedpoints, correspondences, or landmarks<br />
* Image Cropper:<br />
:: VOI selection based on various shapes<br />
* View Navigator:<br />
:: Easily access views and perspectives & create new perspectives<br />
* Screenshot Maker:<br />
:: Create high resolution screenshots of your data<br />
* '''experimental''' Movie Maker:<br />
:: Create videos of your data using timeline based animations<br />
* '''experimental''' Point-based, rigid and manual registration<br />
<br />
Please note that the installers do not contain the source code or header files for the precompiled libraries. To develop applications or plugins with MITK please get the [[Downloads#Source_code| source code]].<br />
<br />
== How to get it? ==<br />
Please have a look at the [[Downloads|download page]].<br />
<br />
<br />
== Highlights of 2014.10 release ==<br />
<br />
<br />
=== Build system ===<br />
* Support for CMake 3.0<br />
* Recommended Doxygen version is now 1.8.7<br />
* Mac OS X<br />
** Full support for 10.9<br />
** Full support for clang 6.0 compiler<br />
** Dropped support for gcc compiler<br />
<br />
=== Core modules ===<br />
The MitkCore module gained the following new features:<br />
<br />
* New I/O concept based on new new [http://docs.mitk.org/2014.10/structmitk_1_1IFileReader.html IFileReader] and [http://docs.mitk.org/2014.10/structmitk_1_1IFileWriter.html IFileWriter] interfaces<br />
* Vector image support has been added to mitk::Image and the ITK access macros<br />
* Image read and write accessors together with ITK macros now handle const and non-const mitk::Image instances correctly<br />
* Ongoing refactoring of the geometry classes:<br />
** New abstract BaseGeometry class<br />
** New inheritance of geometry classes<br />
** Geometry2D replaced by existing PlaneGeometry<br />
** All variables are private now<br />
** More information [http://docs.mitk.org/2014.10/GeometryMigration.html here]<br />
<br />
The [http://docs.mitk.org/2014.10/MicroServices_Overview.html CppMicroServices] library now features:<br />
<br />
* Usage of arbitray classes as service interfaces without the need to decorate the class with a [http://docs.mitk.org/2014.10/group__MicroServices.html#gad5c1340dcd99d403c8da0c52b8db30bb US_DECLARE_SERVICE_INTERFACE] macro.<br />
* Improved [http://docs.mitk.org/2014.10/MicroServices_StaticModules.html static library] handling.<br />
* Improved [http://docs.mitk.org/2014.10/MicroServices_Resources.html resources system] based on embedded zip files.<br />
<br />
=== Modules ===<br />
The following modules were newly added or factored out from existing modules:<br />
<br />
* DICOMReader and DICOMTesting for advanced reading of DICOM files<br />
* DicomRT for handling Radio-Therapy dose images and RT structure sets<br />
* LegacyIO containing the deprecated I/O system (this module will be removed again in the future)<br />
* QtOverlays containing Qt-based overlays (factored out from the Overlays module)<br />
* XNAT (experimental) for accessing XNAT session objects as service objects<br />
<br />
==== Python ====<br />
* Reworked Python-Wrapping: More information [http://docs.mitk.org/2014.10/org_mitk_gui_qt_python.html here].<br />
<br />
==== Segmentation ====<br />
The 3D interpolation has been improved in many areas:<br />
<br />
* Speed-up of interpolation time<br />
* Undo/Redo working<br />
* Live Wire tool is now also working in combination with the 3D interpolation<br />
* Save 3D interpolation as a MITK scene file and reinit interpolation across application restart<br />
<br />
==== MITK Workbench ====<br />
* New icon theme<br />
<br />
==== Third-Party Toolkits ====<br />
The following toolkits were updated:<br />
<br />
* Boost (1.56)<br />
* CTK (65420ed0)<br />
* Qxt (3e7424f842d4)<br />
* VTK (6.1.0+74f4888)<br />
<br />
The following third-party toolkits were added to the MITK superbuild:<br />
<br />
* Numpy<br />
* Eigen<br />
* PCRE<br />
* Python<br />
* SimpleITK<br />
* Swig<br />
* ZLIB<br />
<br />
== Deprecated Functionality ==<br />
The documentation contains a detailed list of [http://docs.mitk.org/2014.10/group__MITKDeprecatedAPI.html#deprecatedSince2014_10 deprecated functionality]. Please find a summary below:<br />
<br />
* The previous I/O system has been deprecated and will be removed in the future.<br />
* Some MITK macros for C++ unit testing have been deprecated.<br />
* The Qxt library will not be included anymore starting with the next release<br />
* Early announcement: The next release will be based on Qt5. Qt4 support might be declared deprecated in the next release and dropped in the release after next.<br />
<br />
<br />
== Breaking Changes ==<br />
Breaking changes related to CTK:<br />
<br />
* The syntax for specifying library versions when pre-loading them using berry::Platform::ARG_PRELOAD_LIBRARY changed from *libMyLibrary:1.0* to *libMyLibrary$1.0* (fixing a bug when using absolute library paths on Windows).<br />
<br />
Breaking changes related to CppMicroServices:<br />
<br />
* The signature of the [http://docs.mitk.org/2014.10/group__MicroServicesCMake.html#ga40f3441d51b7de932405454bb3b25ac2 usFunctionEmbedResources] CMake macro changed.<br />
<br />
<br />
== Bugfixes ==<br />
In the 8 months since the last release more than [http://bugs.mitk.org/buglist.cgi?bug_severity=blocker&bug_severity=critical&bug_severity=major&bug_severity=medium&bug_severity=minor&bug_severity=trivial&bug_severity=unspecified&bug_status=RESOLVED&chfield=resolution&chfield=bug_status&chfieldfrom=2014-04-08&chfieldto=2014-11-27&chfieldvalue=FIXED&component=BlueBerry&component=Build%20system&component=Core&component=CoreApp%20Plugins&component=CoreUI&component=Diffusion%20Imaging&component=Documentation&component=IGT&component=Measurement%20Bundle&component=Modules&component=Other&component=Python%20Wrapping&component=Qt%20GUI%20Modules&component=Rendering&component=Segmentation&component=ToF&component=Workbench%20Plugins&list_id=77737&product=MITK&query_format=advanced&resolution=FIXED&order=changeddate,bug_severity,priority,bug_id%20DESC&query_based_on= 400] bugs were fixed.<br />
<br />
Not everything could be fixed in time, so here are the most important [http://bugs.mitk.org/buglist.cgi?priority=high&bug_severity=blocker&bug_severity=critical&bug_severity=major&chfieldto=2014-27-11&chfield=%5bBug%20creation%5d&query_format=advanced&bug_status=UNCONFIRMED&bug_status=CONFIRMED&bug_status=IN_PROGRESS&product=MITK known issues]<br />
<br />
== New feature list ==<br />
Complete list of new features since MITK 2014.03:<br />
<br />
{| class="wikitable" style="background-color:#ffffff;"<br />
![http://bugs.mitk.org/buglist.cgi?bug_severity=feature%20request&bug_status=RESOLVED&chfieldfrom=2014-04-08&chfieldto=2014-11-20&columnlist=bug_id,component,short_desc&list_id=79967&product=MITK&query_format=advanced&resolution=FIXED&order=bug_id&query_based_on= ID]<br />
![http://bugs.mitk.org/buglist.cgi?bug_severity=feature%20request&bug_status=RESOLVED&chfieldfrom=2014-04-08&chfieldto=2014-11-20&columnlist=bug_id,component,short_desc&list_id=79967&product=MITK&query_format=advanced&resolution=FIXED&order=component%20DESC,changeddate,bug_severity,priority,bug_id%20DESC&query_based_on= Comp] <br />
![http://bugs.mitk.org/buglist.cgi?bug_severity=feature%20request&bug_status=RESOLVED&chfieldfrom=2014-04-08&chfieldto=2014-11-20&columnlist=bug_id,component,short_desc&list_id=79967&product=MITK&query_format=advanced&resolution=FIXED&order=short_desc,component,changeddate,bug_severity,priority,bug_id%20DESC&query_based_on= Summary]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16117 16117]<br />
|BlueBerry<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16117 Add print(er) support]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16272 16272]<br />
|Build system<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16272 Build system support for Qt5 + QML demo application] <br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16865 16865]<br />
|Build system <br />
|[http://bugs.mitk.org/show_bug.cgi?id=16865 Provide a package version file for MITK]|<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18035 18035]<br />
|Build system <br />
|[http://bugs.mitk.org/show_bug.cgi?id=18035 CDash clients should display pretty distribution names in their build name]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18160 18160]<br />
|Build system<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18160 Implement possibility to switch between different icon sets]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18323 18323]<br />
|Build system<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18323 Define MITK Diffusion specific MITK_BUILD_CONFIGURATION]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17832 17832]<br />
|Build system<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17832 Update CTK for improved XNAT support]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15749 15749]<br />
|Core<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15749 Compression should be configurable in mitkImageWriter]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17738 17738]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17738 Alternative projections for thick slice mode]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17196 17196]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17196 DisplayInteractor should support more configuration]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15852 15852]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=15852 platformproject: enable easy conversion of datatypes Point/Vector/Matrix from and to MITK]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17934 17934]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17934 ImageWriteAccessor should ignore ReadAccessors with IgnoreLock option]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17931 17931]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17931 ImageToItk should lock input image for reading if output image is const]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17986 17986]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17986 Enable mitk::Image to contain itk::VectorImage]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15821 15821]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=15821 Add possibility to accessByItk using ReadAccessor]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17960 17960]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17960 Image loaded from DICOM should have property containing the modality]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16862 16862]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=16862 Disable repositioning region on window resize]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17727 17727]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17727 Add support for renderer specific property predicate]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17035 17035]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17035 Introduce new Geometry concept: BaseGeometry class, less inheritance, etc (Platform project)]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16744 16744]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=16744 Refactoring of DicomSeriesReader]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17918 17918]<br />
|Core <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17918 Introduce hidden objects in the data storage]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17441 17441]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17441 Setup NonLocalMeansDenoisingTest]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17592 17592]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17592 Fiberfox: image input to determine non-fiber volume fractions] <br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15770 15770]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15770 Multishell Signal Processing]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17757 17757]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17757 DICOM export from CL (MiniApp)]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17760 17760] <br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17760 Include Resampling to fixed spacing into BatchedRegistration]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17626 17626]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17626 refactor PreprocessingView Layout] <br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17820 17820]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17820 Enhance BatchedFolderRegistration]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17961 17961]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17961 Resampling MiniApp for regular Images and DW Images]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17811 17811]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17811 Improve Connectomics mini apps functionality]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17968 17968]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17968 Implement mit diffusion navigator view]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17994 17994]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17994 Create random parcellation view]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=8870 8870]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=8870 Highlight selected ROI if Fiber Bundle Operations View is active]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17973 17973] <br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17973 XML support for diffusion miniapps]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18234 18234]<br />
|Diffusion<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18234 segmentation view should be included in fiber processing perspective] <br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15630 15630]<br />
|Documentation <br />
|[http://bugs.mitk.org/show_bug.cgi?id=15630 Refer to image documentation in doxygen class description]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=14420 14420]<br />
|Documentation<br />
|[http://bugs.mitk.org/show_bug.cgi?id=14420 Fix up documentation to be pdf ready]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18146 18146]<br />
|Documentation<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18146 Improve Viewnavigator documentation]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17718 17718]<br />
|IGT <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17718 Workerthreads for tracking plugins]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17735 17735]<br />
|IGT<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17735 Make tool landmarks editable in the navigation tool manager]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17922 17922]<br />
|IGT <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17922 Change tool color if navigation tool is invalid]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17771 17771]<br />
|IGT <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17771 Add method to get raw displacement navigation data from mitk::NodeDisplacementFilter]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17690 17690]<br />
|Measurement<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17690 Refactor intensity profile computation]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18094 18094]<br />
|Measurement<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18094 Implement intensity profile computation]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17824 17824]<br />
|Modules<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17824 QmitkUSNewVideoDeviceWidget does not offer a file open dialog for video files]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17840 17840]<br />
|Modules<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17840 USDevice should notify about property changes.]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17859 17859]<br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17859 Method for getting if at least one calibration for a Combined Modality was loaded.]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17861 17861]<br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17861 Documentation of the ultrasound module should be updated to reflect the current status of the module]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16625 16625]<br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=16625 PlanarCircle should be editable with each point on the circle]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16623 16623]<br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=16623 Make OpenCV GrabCut algorithm available in MITK]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18116 18116]<br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=18116 Integrate personal simulation branch]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15104 15104] <br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=15104 Create Overlay framework for managing different types of graphic items in the renderwindows]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17911 17911]<br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17911 US Telemed devices: get image geometry from device]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17846 17846]<br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17846 RT structureset reader refactoring]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17847 17847]<br />
|Modules <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17847 RT dose-image reader refactoring]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16643 16643]<br />
|Modules<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16643 Persistence framework for MITK]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17987 17987]<br />
|Other <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17987 Enable / disable mbilog output]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15803 15803]<br />
|Other <br />
|[http://bugs.mitk.org/show_bug.cgi?id=15803 Eliminate compiler warnings]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17689 17689]<br />
|QtWidget <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17689 Implement plot widget based on gnuplot]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17536 17536]<br />
|QtWidget <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17536 Clean up QtWidgetsExt]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15912 15912]<br />
|QtWidget <br />
|[http://bugs.mitk.org/show_bug.cgi?id=15912 QmitkTransferFunctionWidget lacks renderer-specific transfer function ability]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=14386 14386]<br />
|Rendering<br />
|[http://bugs.mitk.org/show_bug.cgi?id=14386 Colormaps and look-up tables]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18136 18136]<br />
|Rendering<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18136 Use existing scalar lookup table from vtkPolyData in SurfaceGLMapper2D]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17567 17567]<br />
|Segmentation<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17567 Otsu 3D Tool: selection of multiple classes]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16095 16095]<br />
|Segmentation<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16095 When creating a polygon the resulting data nodes should clear naming]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15851 15851]<br />
|Segmentation<br />
|[http://bugs.mitk.org/show_bug.cgi?id=15851 Create user manual for clipping plane view]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=12304 12304]<br />
|Segmentation<br />
|[http://bugs.mitk.org/show_bug.cgi?id=12304 Intersection contour detection should cover more cases]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18007 18007]<br />
|Segmentation<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18007 Re-initialization of the 3D interpolation after application restart]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17803 17803]<br />
|Segmentation<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17803 Implement ImageToContourModelFilter]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17124 17124]<br />
|ToF <br />
|[http://bugs.mitk.org/show_bug.cgi?id=17124 Kinect V2 texture mapping]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=12047 12047]<br />
|Workbench<br />
|[http://bugs.mitk.org/show_bug.cgi?id=12047 Segmentation perspective missing in ext app installer]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17525 17525]<br />
|Workbench<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17525 Number of bins of the histogram in the statistics view is fix defined]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17866 17866]<br />
|Workbench<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17866 Ultrasound plugin should automatically select first entry on the device lists]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16294 16294]<br />
|Workbench<br />
|[http://bugs.mitk.org/show_bug.cgi?id=16294 XNAT Browsing Editor for MITK]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18157 18157]<br />
|Workbench<br />
|[http://bugs.mitk.org/show_bug.cgi?id=18157 Set default focus of view navigator to search bar]<br />
|-<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17923 17923]<br />
|Workbench<br />
|[http://bugs.mitk.org/show_bug.cgi?id=17923 Persistence for Ultrasound plugin]<br />
|}</div>AndreasFetzer