Difference between revisions of "Multi Label Segmentation"
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* what enhancements would help in which situations? | * what enhancements would help in which situations? | ||
* useful resources: | * useful resources: | ||
| − | * vtkEdge paintbrush classes e.g. http://www.vtkedge.org/doc/nightly/html/classvtkKWEPaintbrushMergeSketches.html#_details | + | ** vtkEdge paintbrush classes e.g. http://www.vtkedge.org/doc/nightly/html/classvtkKWEPaintbrushMergeSketches.html#_details |
| − | * itkSnap http://www.itksnap.org/pmwiki/pmwiki.php | + | ** itkSnap http://www.itksnap.org/pmwiki/pmwiki.php |
| − | * to support multi-label images, ITK's label object classes (http://www.insight-journal.org/browse/publication/176) could be useful | + | ** to support multi-label images, ITK's label object classes (http://www.insight-journal.org/browse/publication/176) could be useful |
| − | * Segmentation module in Amira (as it used to be in v3.1)http://www.amira.com/images/stories/pdf/31/Amira31-manual.pdf (see Sec. 2.5) | + | ** Segmentation module in Amira (as it used to be in v3.1)http://www.amira.com/images/stories/pdf/31/Amira31-manual.pdf (see Sec. 2.5) |
| − | + | * how does I/O work? | |
| − | + | * do we need a new data type for MITK (derived from [[BaseData]]?) | |
| − | + | * how could these be mapped types for rendering? | |
== Implications on the implementation == | == Implications on the implementation == | ||
Revision as of 11:29, 26 January 2011
Using multiple segmentations with the Segmentation bundle
#!wiki caution This is really just a sketch. Move / change anything
Following a proposal of Sebastian Ordas to support multi-label segmentations, this page will be used to sketch future changes to the Segmentation bundle and the related framework.
Shortcomings of the current implementation
- 8-bit images are used for segmentations by default, wasting 7 of 8 byts, occupying far more memory than technically necessary
Wishlist
- what is not possible or cumbersome and should be changed?
- what enhancements would help in which situations?
- useful resources:
- vtkEdge paintbrush classes e.g. http://www.vtkedge.org/doc/nightly/html/classvtkKWEPaintbrushMergeSketches.html#_details
- itkSnap http://www.itksnap.org/pmwiki/pmwiki.php
- to support multi-label images, ITK's label object classes (http://www.insight-journal.org/browse/publication/176) could be useful
- Segmentation module in Amira (as it used to be in v3.1)http://www.amira.com/images/stories/pdf/31/Amira31-manual.pdf (see Sec. 2.5)
- how does I/O work?
- do we need a new data type for MITK (derived from BaseData?)
- how could these be mapped types for rendering?
Implications on the implementation
- what parts of MITK would need to be changed?
- what needs to be changed in the Segmentation view?